FFCP PHASE1:Hg19::chr11:22850950..22850976,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000499625,ENST00000528701,uc001mqq.1_5end | |||
|cluster_id=chr11:22850950..22850976,+ | |||
|description=CAGE_peak_1_at_ENST00000499625_5end,CAGE_peak_1_at_ENST00000528701_5end,CAGE_peak_1_at_uc001mqq.1_5end | |||
|id=chr11:22850950..22850976,+ | |||
|ontology_enrichment_celltype=CL:0000838!4.90e-18!52;CL:0000542!3.59e-17!53;CL:0000051!3.59e-17!53;CL:0000084!6.98e-13!25;CL:0000827!6.98e-13!25;CL:0000791!5.20e-12!18;CL:0000789!5.20e-12!18;CL:0002420!5.20e-12!18;CL:0002419!5.20e-12!18;CL:0000790!5.20e-12!18;CL:0000037!2.97e-08!172;CL:0000566!2.97e-08!172;CL:0000625!3.77e-08!11;CL:0000988!1.08e-07!182;CL:0002032!5.11e-07!165;CL:0000837!5.11e-07!165 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.01e-16;18!CL:0000789;1.01e-16;18!CL:0002419;1.01e-16;18!CL:0000084;1.13e-15;25!CL:0000542;4.86e-12;53!CL:0000625;7.47e-12;11!CL:0000624;6.96e-08;6!CL:0000236;1.26e-07;13!CL:0000451;4.48e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,9.88e-21,52;CL:0000542,4.55e-20,53;CL:0000051,4.55e-20,53;CL:0000791,6.94e-17,18;CL:0000789,6.94e-17,18;CL:0002420,6.94e-17,18;CL:0002419,6.94e-17,18;CL:0000790,6.94e-17,18;CL:0000084,1.14e-15,25;CL:0000827,1.14e-15,25;CL:0000625,5.30e-12,11;CL:0000037,3.53e-11,168;CL:0000988,2.08e-10,177;CL:0000738,1.08e-09,136;CL:0002032,4.07e-09,161;CL:0000837,4.07e-09,161;CL:0002031,5.68e-09,120;CL:0000624,6.57e-08,6;CL:0000451,4.52e-07,10;CL:0002087,5.16e-07,115 | |||
|ontology_enrichment_development_v019=CL:0000790;1.01e-16;18!CL:0000051;4.86e-12;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!5.38e-23!115;UBERON:0001049!2.64e-15!57;UBERON:0005068!2.64e-15!57;UBERON:0006241!2.64e-15!57;UBERON:0007135!2.64e-15!57;UBERON:0002616!2.69e-14!59;UBERON:0000955!3.55e-13!69;UBERON:0006238!3.55e-13!69;UBERON:0003080!3.65e-12!42;UBERON:0001017!3.84e-12!82;UBERON:0002780!4.54e-12!41;UBERON:0001890!4.54e-12!41;UBERON:0006240!4.54e-12!41;UBERON:0005743!7.80e-12!86;UBERON:0003075!1.73e-11!86;UBERON:0007284!1.73e-11!86;UBERON:0002346!1.88e-11!90;UBERON:0000073!5.09e-11!94;UBERON:0001016!5.09e-11!94;UBERON:0001893!3.84e-09!34;UBERON:0002020!3.90e-09!34;UBERON:0003528!3.90e-09!34;UBERON:0002791!6.78e-09!33;UBERON:0001869!1.91e-08!32;UBERON:0003056!4.56e-08!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0000073;3.42e-10;53!UBERON:0002616;3.42e-10;53!UBERON:0002780;3.92e-10;41!UBERON:0001890;3.92e-10;41!UBERON:0001893;1.04e-08;34!UBERON:0003528;1.15e-08;34!UBERON:0002020;1.15e-08;34!UBERON:0007023;4.92e-08;114!UBERON:0002791;6.47e-08;32!UBERON:0001869;8.35e-08;32!UBERON:0000125;1.33e-07;9!UBERON:0002308;1.33e-07;9!UBERON:0000955;9.92e-07;68 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,4.60e-25,114;UBERON:0001049,5.24e-19,56;UBERON:0005068,5.24e-19,56;UBERON:0006241,5.24e-19,56;UBERON:0007135,5.24e-19,56;UBERON:0000073,1.28e-18,53;UBERON:0002616,1.28e-18,53;UBERON:0002780,6.39e-15,41;UBERON:0001890,6.39e-15,41;UBERON:0003080,6.39e-15,41;UBERON:0006240,6.39e-15,41;UBERON:0000955,9.43e-15,68;UBERON:0006238,9.43e-15,68;UBERON:0001017,3.35e-13,81;UBERON:0001016,2.02e-12,89;UBERON:0003075,2.57e-12,82;UBERON:0007284,2.57e-12,82;UBERON:0002346,9.36e-12,86;UBERON:0001893,1.45e-10,34;UBERON:0003528,1.48e-10,34;UBERON:0002020,1.48e-10,34;UBERON:0002791,1.48e-09,32;UBERON:0001869,1.56e-09,32;UBERON:0003056,7.08e-09,61;UBERON:0010371,6.28e-08,104;UBERON:0000125,1.01e-07,9;UBERON:0002308,1.01e-07,9;UBERON:0002619,7.61e-07,22 | |||
|phase1_expression=0,0,0.281908808191942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0.313454721478088,0.572471974262113,0,0.251085279189606,1.29902789771517,1.64201178899891,0.944529375764151,0,0.767658796194425,0.77408061658038,0,0.30120591877825,0,0,0,7.63361142270603,0.553995408531877,2.00544447470142,1.51907609501096,0.223915474239924,0.32389366601898,0.77272670290256,0,0,0,0,0,0.309706370895104,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0.150176892841506,0.16072558669708,0,0,0,1.75996244461323,3.27683166757279,4.44754626931777,2.13365111283254,1.20118796110804,4.02326707968138,3.30522436392431,2.86216126360609,2.27685187643779,1.17447437874188,3.05818582500183,15.8605594294831,5.04457706683382,3.95076127162616,9.44206896546399,5.89516144123747,4.93443597598822,2.17342444007882,4.23698946623668,5.6813736688168,0,3.34231370655521,3.53527088969805,2.87994062958707,2.43723477388514,2.68991771423918,1.56071217071854,2.46656856905514,2.21080014228679,3.47763702882063,6.52460877913066,8.29376567078111,8.36284190439814,2.03956816855619,8.04763036564035,5.49803912772208,4.04831507231205,7.00843911513013,3.25541726928209,2.85135613334512,3.46322773878877,3.07167866770604,2.49861453104692,2.8413270245282,8.21127996921047,5.24177532384304,4.54648332831962,6.51709817472595,0,0.670700859703636,0,0.361439152384566,0,1.01392563272577,0,0.973269740605272,0.567208902984407,0.443458794925128,0.43917392846563,2.81605012320082,0,0.370784442784429,2.59637914923747,2.08955684759121,1.59549552622638,1.19245312152671,1.71598473234038,3.34311751196608,0.79504962946682,0,0.694281003215189,0,0,0.275118041940067,0.208994966536811,2.06733407335463,4.26919515224052,3.68192674041137,0,0,0.732186172644509,0.367663080345869,0,0.982297011124877,1.57170560838319,0.337834441449967,0,1.89853131913626,0,0,0,0,0.496971951695318,0.379891534993739,0.926864265692532,0,0.354668382198357,0,0,0,0,0.269421344139376,0,0.605429710579726,0.576175924479999,0.234321431833797,0,0,0.149448680551801,0,0.161872944368132,0,0,0.368502951935304,0.619954687054593,0,0,0,0,0,0,0,0,0.30648779579902,0.150238058906597,0.226864366320042,0,0.213557388818567,0,0,0,0,0,0.168776332241266,0,0,0.276149695926898,0.484938170456436,0.355009592516614,0,0,0.193260853163297,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0.236613600079688,0.168584690078102,0.482022059766964,0.220587945464788,0.217879444092406,0.237270619111097,0.134831308160164,0.196221465125346,0.38474715694639,0,0,0,0,0,0,0.590789906681404,0,0.368965315629341,0.171567810298526,0,0,0,0,0,0,0,0,0.469634776943287,0.433099343283221,0,0.951270761172991,1.58040879591855,0.858486162094873,0.246217006087397,0.234004265139238,0.743155811443641,0,0,0.141775097242386,0,0,0.383382679165211,6.89728533054321,5.10680917276711,4.35389042635621,3.747118788841,4.16600030307054,1.0159663086747,0,1.17217447210047,0,0.719792448923265,0,0.857479297891735,0.112131084345361,0,0.07333828582095,0.775630294546667,0,0,0.531876233169741,1.04007436911366,0,0,0,0,0.542621605391443,0,0,0,0,0.301439377059586,0,0,0,0.502257091432126,0,0.239624855491583,0,0,0.579125226670317,0.410952645100767,0.537182889719687,0.672510863961164,3.74358444383662,4.9594342217689,3.7219480521127,0,2.60279707715243,0.773288812777695,0.167516265334349,0,0,0,0.414415513436035,0.12269149171914,0,0,0.207970861530807,0,0,0,0,0,1.03473071292505,0,0,0.260650843404249,0.195801157462741,0,1.44737618286021,2.37285620900479,2.02782359826544,0,0,0,0,0,0,0,0,0.160853921143607,0,0,0,0.0821271560138091,0,0,0,0.200506470303285,0.184161977871793,0,0.546273504020151,0,0.451199612907412,0.15403067420883,1.56869953835371,0,0.211103257785751,0,0.170093705276516,0,0,0.270946437543853,0,0.254876273045038,0,0,0.219259876645935,0,0.256450125116389,0.328014645699706,0,1.03041011647722,1.73981983154852,1.65018999841176,0,0,1.6068392984416,0.193341436584244,0.154048617114644,0.307007349452259,0.137836572484531,0.214840489736547,0.145016693914229,0.0852266274161009,0.0890320356467374,0,0,0.510450849978337,0.10115778085555,0,0.31481234683064,0.6970372701606,0.924100740528266,0,0,0.37064843820784,0.143124886741991,0.744316738719335,0.316379424718726,0.190630193923825,0.255897791311334,0.42793898803392,0.636406495851874,0,0,0.274537029736055,0,0,0,0,0,0.731140468893853,2.11300293513511,0,0.141405431953713,0,0,0,0.876901770507525,0,0,0,0.6196469961995,0.563391205064483,0.143411352204052,0,0,0,1.05553817648832,0.658589785919804,0.379473173765715,0.349934720244983,0.0962221127255121,0,0,1.12972560932135,0,0,0,0,1.52234282769651,0,0,3.09701308095126,1.64544909234478,0.648473311192717,0.540031437238115,2.37937552888281,0,0,0.245040215981032,0,0.432807638929335,0.569134746787313,2.07254154547469,0.399158742865633,3.83010740264733,1.48171507906718,0.649243880549111,3.08876895924805,2.05411211129873,0,0,3.55512733383367,0.1605880751037,0.403599414382095,0.425846237690326,1.71752672377882,1.84344458585075,0.671028323677248,0.834245708559542,0,0.27840617389524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| |||
|short_description=p1@ENST00000499625,p1@ENST00000528701,p1@uc001mqq.1 | |||
}} |
Latest revision as of 21:08, 23 July 2015
Short description: | p1@ENST00000499625, p1@ENST00000528701, p1@uc001mqq.1 |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ENST00000499625_5end, CAGE_peak_1_at_ENST00000528701_5end, CAGE_peak_1_at_uc001mqq.1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000499625, ENST00000528701, uc001mqq.1_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 9.88e-21 | 52 |
lymphocyte | 4.55e-20 | 53 |
common lymphoid progenitor | 4.55e-20 | 53 |
mature alpha-beta T cell | 6.94e-17 | 18 |
alpha-beta T cell | 6.94e-17 | 18 |
immature T cell | 6.94e-17 | 18 |
mature T cell | 6.94e-17 | 18 |
immature alpha-beta T cell | 6.94e-17 | 18 |
T cell | 1.14e-15 | 25 |
pro-T cell | 1.14e-15 | 25 |
CD8-positive, alpha-beta T cell | 5.30e-12 | 11 |
hematopoietic stem cell | 3.53e-11 | 168 |
hematopoietic cell | 2.08e-10 | 177 |
leukocyte | 1.08e-09 | 136 |
hematopoietic oligopotent progenitor cell | 4.07e-09 | 161 |
hematopoietic multipotent progenitor cell | 4.07e-09 | 161 |
hematopoietic lineage restricted progenitor cell | 5.68e-09 | 120 |
CD4-positive, alpha-beta T cell | 6.57e-08 | 6 |
dendritic cell | 4.52e-07 | 10 |
nongranular leukocyte | 5.16e-07 | 115 |
Ontology term | p-value | n |
---|---|---|
adult organism | 4.60e-25 | 114 |
neural tube | 5.24e-19 | 56 |
neural rod | 5.24e-19 | 56 |
future spinal cord | 5.24e-19 | 56 |
neural keel | 5.24e-19 | 56 |
regional part of nervous system | 1.28e-18 | 53 |
regional part of brain | 1.28e-18 | 53 |
regional part of forebrain | 6.39e-15 | 41 |
forebrain | 6.39e-15 | 41 |
anterior neural tube | 6.39e-15 | 41 |
future forebrain | 6.39e-15 | 41 |
brain | 9.43e-15 | 68 |
future brain | 9.43e-15 | 68 |
central nervous system | 3.35e-13 | 81 |
nervous system | 2.02e-12 | 89 |
neural plate | 2.57e-12 | 82 |
presumptive neural plate | 2.57e-12 | 82 |
neurectoderm | 9.36e-12 | 86 |
telencephalon | 1.45e-10 | 34 |
brain grey matter | 1.48e-10 | 34 |
gray matter | 1.48e-10 | 34 |
regional part of telencephalon | 1.48e-09 | 32 |
cerebral hemisphere | 1.56e-09 | 32 |
pre-chordal neural plate | 7.08e-09 | 61 |
ecto-epithelium | 6.28e-08 | 104 |
neural nucleus | 1.01e-07 | 9 |
nucleus of brain | 1.01e-07 | 9 |
regional part of cerebral cortex | 7.61e-07 | 22 |