FFCP PHASE1:Hg19::chr1:94375144..94375159,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2730 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4312 | |||
|TSSclassifier=strong | |||
|UniProt=P48507 | |||
|association_with_transcript=-132bp_to_NM_002061,uc001dqg.1_5end | |||
|cluster_id=chr1:94375144..94375159,- | |||
|description=CAGE_peak_3_at_GCLM_5end | |||
|id=chr1:94375144..94375159,- | |||
|ontology_enrichment_celltype=CL:0000542!3.82e-17!53;CL:0000051!3.82e-17!53;CL:0000838!4.78e-17!52;CL:0000791!4.04e-09!18;CL:0000789!4.04e-09!18;CL:0002420!4.04e-09!18;CL:0002419!4.04e-09!18;CL:0000790!4.04e-09!18;CL:0000084!5.21e-09!25;CL:0000827!5.21e-09!25;CL:0000945!6.20e-08!24;CL:0000826!6.20e-08!24;CL:0000625!4.68e-07!11 | |||
|ontology_enrichment_celltype_v019=CL:0000542;9.65e-12;53!CL:0000084;9.61e-11;25!CL:0000791;2.14e-10;18!CL:0000789;2.14e-10;18!CL:0002419;2.14e-10;18!CL:0000945;1.18e-08;24!CL:0000625;1.37e-08;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,1.29e-20,53;CL:0000051,1.29e-20,53;CL:0000838,1.76e-20,52;CL:0000791,2.19e-11,18;CL:0000789,2.19e-11,18;CL:0002420,2.19e-11,18;CL:0002419,2.19e-11,18;CL:0000790,2.19e-11,18;CL:0000084,3.33e-11,25;CL:0000827,3.33e-11,25;CL:0000945,9.07e-09,24;CL:0000826,9.07e-09,24;CL:0000625,1.04e-08,11 | |||
|ontology_enrichment_development_v019=CL:0000051;9.65e-12;53!CL:0000790;2.14e-10;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.70e-19!115;UBERON:0001049!1.94e-11!57;UBERON:0005068!1.94e-11!57;UBERON:0006241!1.94e-11!57;UBERON:0007135!1.94e-11!57;UBERON:0000955!1.03e-09!69;UBERON:0006238!1.03e-09!69;UBERON:0005743!2.68e-09!86;UBERON:0001017!5.11e-09!82;UBERON:0002616!5.41e-09!59;UBERON:0000073!9.61e-09!94;UBERON:0001016!9.61e-09!94;UBERON:0003080!2.27e-08!42;UBERON:0001869!2.46e-08!32;UBERON:0001893!2.60e-08!34;UBERON:0002020!3.31e-08!34;UBERON:0003528!3.31e-08!34;UBERON:0002780!3.48e-08!41;UBERON:0001890!3.48e-08!41;UBERON:0006240!3.48e-08!41;UBERON:0002346!3.77e-08!90;UBERON:0003075!5.78e-08!86;UBERON:0007284!5.78e-08!86;UBERON:0002791!5.92e-08!33;UBERON:0000956!2.93e-07!25;UBERON:0000203!2.93e-07!25;UBERON:0002619!4.49e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;3.97e-08;32!UBERON:0001893;1.06e-07;34!UBERON:0002791;2.51e-07;32!UBERON:0003528;3.16e-07;34!UBERON:0002020;3.16e-07;34!UBERON:0002619;3.48e-07;22!UBERON:0000956;4.74e-07;25!UBERON:0000203;4.74e-07;25!UBERON:0001950;9.26e-07;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,9.05e-19,114;UBERON:0001049,2.54e-11,56;UBERON:0005068,2.54e-11,56;UBERON:0006241,2.54e-11,56;UBERON:0007135,2.54e-11,56;UBERON:0000073,6.18e-11,53;UBERON:0002616,6.18e-11,53;UBERON:0000955,2.67e-09,68;UBERON:0006238,2.67e-09,68;UBERON:0001869,4.50e-09,32;UBERON:0001893,1.30e-08,34;UBERON:0003528,1.72e-08,34;UBERON:0002020,1.72e-08,34;UBERON:0002791,4.27e-08,32;UBERON:0002780,6.13e-08,41;UBERON:0001890,6.13e-08,41;UBERON:0003080,6.13e-08,41;UBERON:0006240,6.13e-08,41;UBERON:0003075,7.78e-08,82;UBERON:0007284,7.78e-08,82;UBERON:0001017,1.32e-07,81;UBERON:0002346,1.37e-07,86;UBERON:0002619,1.81e-07,22;UBERON:0000956,2.82e-07,25;UBERON:0000203,2.82e-07,25;UBERON:0001950,5.47e-07,20;UBERON:0001016,8.21e-07,89 | |||
|phase1_expression=1.81678379270557,2.35510576280081,1.26858963686374,0,3.12872766099101,0,0,0,0.783556884599516,0,0.697801167972428,1.31064823278103,2.11013582582763,0.866364470720326,0.662794751455832,0.672325146451775,0,0,0.487932798790507,0.61560529038394,1.22400414746552,1.25381888591235,0.85870796139317,1.23186982565596,1.50651167513763,2.90370941842215,3.11982239909794,2.2826126580967,0,1.15148819429164,0.464448369948228,0,0.30120591877825,0.369754010166788,2.55641761914995,0.995184627411951,1.17440175733939,0,0.200544447470142,0.434021741431704,1.34349284543955,2.91504299417082,1.54545340580512,0.145398238779565,0.377875943688809,0.242584061187816,0.232429036905685,0.822335776043652,0.619412741790207,0.575384784644301,0.256160706529101,0.236482229888585,0,1.29096936716765,0,0.188242339542605,0,0,0,0,0,0.329851300186716,0.398927315243264,0,0.580418477257168,0,0,0.251248665256743,0.521482918420201,0.217188844705117,0.605399502633369,0,0.316462387440884,0.211255286311942,0.212604299965044,0.628975936525128,0,0.150176892841506,0.16072558669708,0,0,0.547992461293902,3.51992488922645,2.73069305631066,1.77901850772711,2.56038133539904,1.20118796110804,2.29900975981793,3.96626923670917,1.90810750907073,1.70763890732835,1.17447437874188,0.382273228125229,1.32171328579026,0,0.790152254325231,1.37696839079683,1.96505381374582,1.64481199199607,2.34061093546949,1.95553359980154,0.473447805734733,1.94826728407911,2.33961959458865,1.47302953737419,2.21533894583621,0.812411591295047,2.30564375506215,2.21100890851793,3.61763390128087,2.76350017785848,3.47763702882063,2.07601188426885,1.87278579662799,2.09071047609954,3.73920830901968,2.68254345521345,3.4362744548263,2.02415753615602,2.86708872891687,9.11516835398986,7.60361635558699,2.86092726247768,3.07167866770604,7.49584359314075,6.15620855314444,2.46338399076314,1.41124720257313,3.20928234940209,1.44824403882799,0,0,1.53435074212236,0.361439152384566,0,0.724232594804119,0.795285947051099,1.45990461090791,0.850813354476611,1.55210578223795,0.702678285545008,2.03017567021455,1.09288586487763,0,2.59637914923747,0.522389211897802,1.19662164466979,0.238490624305342,0.571994910780128,0,0,0,0,0,0,0.825354125820202,0,0.516833518338658,0.35576626268671,0.66944122552934,0,0,0.488124115096339,0,0,0.267899184852239,0.673588117878509,0.337834441449967,0,0,0.366403487860815,0,0,0.436094052142534,2.48485975847659,0.506522046658319,0.132409180813219,1.14734648299525,0.709336764396714,0,1.06748995729705,0.49333509683432,0,0.269421344139376,0,0.756787138224657,0,0.937285727335186,0,0,0.149448680551801,0.352303495931295,0,0.140450806702248,0,0.122834317311768,0.309977343527296,1.18800285728205,3.21447008062124,0,0,0.336672227908132,0.625592599359821,0,0.438977620880838,0.30648779579902,0.600952235626387,0.453728732640084,0,1.92201649936711,0.635795703478686,0,0.824420233907511,0.257640540045629,0.37223371266318,0,0.194874010322397,0.252433774244115,0.552299391853796,0.646584227275248,0.355009592516614,0.604512589365842,0,0.386521706326594,0,0,1.34171076742555,1.45782745153634,1.04574548582567,1.55491582523056,1.26160425437814,1.82488679537915,0,0,0,0.464367928031979,0.721879481669586,0.591534000199219,0.505754070234305,0.482022059766964,0.661763836394364,0.435758888184812,0.474541238222193,0.269662616320329,0.588664395376038,0.38474715694639,0,0,0.4115740113314,0,0,0,1.18157981336281,2.6487785964879,0.737930631258681,0,0.109750285408626,0,0.201057944823262,1.01847289674383,0,0,0,0.927443239800615,0.587043471179108,0.433099343283221,0,0.380508304469197,0.790204397959275,0,0.984868024349589,0.234004265139238,0.743155811443641,0,0.16798212819886,0.141775097242386,0.806026704325635,0.871901815541886,0.383382679165211,1.47798971368783,1.05658120815871,0.207328115540772,0.432359860250884,0.12624243342638,1.33345578013555,0.763976851116555,2.34434894420094,0,1.33675740514321,0.901029173531752,0.857479297891735,0.560655421726804,0.87192013766656,0.22001485746285,0.258543431515556,0,0,1.59562869950922,0,0.514414748524284,0,0.799266537048298,0.857867961948885,0.542621605391443,1.64648067356154,0.325736184293735,1.42156779497018,0.791951872933429,0,0,0.499864955910285,1.2162378064119,0,0,0.239624855491583,2.29723871668228,0,0.144781306667579,0.205476322550383,0,2.80212859983818,2.1673383622212,3.23441362289276,2.82354679815446,1.01637849688985,0,0.773288812777695,0.670065061337395,0.637938751653163,0,0,0,1.47229790062968,0.500170521059677,0.813795071099207,0.207970861530807,0.178428988797162,0.946214490203608,0.819989904948992,1.20378439891088,2.27407504055985,0,0.664225598535437,0.184369168541703,0.173767228936166,0.587403472388222,1.37257369524342,1.24060815673732,0.215714200818617,1.38745825144478,0.303127571446259,0,0.907170879989041,0.992431231275107,1.38115775959256,0.841980283299221,1.02511319404561,0.511707249066704,0.321707842287215,0,0,0.177561725313127,0,0.519254429183621,0,0.725156697549733,0,0.184161977871793,0.34444334449382,0.364182336013434,0.917870904715969,0,0,2.35304930753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| |||
|short_description=p3@GCLM | |||
}} |
Latest revision as of 22:28, 19 September 2015
Short description: | p3@GCLM |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_GCLM_5end |
Coexpression cluster: | NA |
Association with transcript: | -132bp_to_NM_002061, uc001dqg.1_5end |
EntrezGene: | GCLM |
HGNC: | 4312 |
UniProt: | P48507 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 1.29e-20 | 53 |
common lymphoid progenitor | 1.29e-20 | 53 |
lymphoid lineage restricted progenitor cell | 1.76e-20 | 52 |
mature alpha-beta T cell | 2.19e-11 | 18 |
alpha-beta T cell | 2.19e-11 | 18 |
immature T cell | 2.19e-11 | 18 |
mature T cell | 2.19e-11 | 18 |
immature alpha-beta T cell | 2.19e-11 | 18 |
T cell | 3.33e-11 | 25 |
pro-T cell | 3.33e-11 | 25 |
lymphocyte of B lineage | 9.07e-09 | 24 |
pro-B cell | 9.07e-09 | 24 |
CD8-positive, alpha-beta T cell | 1.04e-08 | 11 |
Ontology term | p-value | n |
---|---|---|
adult organism | 9.05e-19 | 114 |
neural tube | 2.54e-11 | 56 |
neural rod | 2.54e-11 | 56 |
future spinal cord | 2.54e-11 | 56 |
neural keel | 2.54e-11 | 56 |
regional part of nervous system | 6.18e-11 | 53 |
regional part of brain | 6.18e-11 | 53 |
brain | 2.67e-09 | 68 |
future brain | 2.67e-09 | 68 |
cerebral hemisphere | 4.50e-09 | 32 |
telencephalon | 1.30e-08 | 34 |
brain grey matter | 1.72e-08 | 34 |
gray matter | 1.72e-08 | 34 |
regional part of telencephalon | 4.27e-08 | 32 |
regional part of forebrain | 6.13e-08 | 41 |
forebrain | 6.13e-08 | 41 |
anterior neural tube | 6.13e-08 | 41 |
future forebrain | 6.13e-08 | 41 |
neural plate | 7.78e-08 | 82 |
presumptive neural plate | 7.78e-08 | 82 |
central nervous system | 1.32e-07 | 81 |
neurectoderm | 1.37e-07 | 86 |
regional part of cerebral cortex | 1.81e-07 | 22 |
cerebral cortex | 2.82e-07 | 25 |
pallium | 2.82e-07 | 25 |
neocortex | 5.47e-07 | 20 |
nervous system | 8.21e-07 | 89 |