FFCP PHASE1:Hg19::chr6:138189307..138189329,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=40bp_to_uc003qhq.1_5end | |||
|cluster_id=chr6:138189307..138189329,- | |||
|coexpression_cluster_id=C1213 | |||
|description=CAGE_peak_3_at_uc003qhq.1_5end | |||
|id=chr6:138189307..138189329,- | |||
|ontology_enrichment_celltype=CL:0000738!1.82e-32!140;CL:0000037!7.38e-27!172;CL:0000566!7.38e-27!172;CL:0002087!4.26e-26!119;CL:0000988!9.99e-26!182;CL:0000542!5.48e-24!53;CL:0000051!5.48e-24!53;CL:0002031!6.35e-24!124;CL:0000838!1.35e-23!52;CL:0002032!1.61e-22!165;CL:0000837!1.61e-22!165;CL:0000084!4.60e-15!25;CL:0000827!4.60e-15!25;CL:0000791!9.80e-14!18;CL:0000789!9.80e-14!18;CL:0002420!9.80e-14!18;CL:0002419!9.80e-14!18;CL:0000790!9.80e-14!18;CL:0000625!5.00e-10!11;CL:0000945!4.98e-08!24;CL:0000826!4.98e-08!24;CL:0000451!1.23e-07!10 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.21e-34;18!CL:0000789;1.21e-34;18!CL:0002419;1.21e-34;18!CL:0000084;2.36e-30;25!CL:0000625;3.44e-22;11!CL:0000624;1.62e-16;6!CL:0000542;3.50e-15;53!CL:0000784;7.56e-10;3!CL:0000898;2.89e-09;3!CL:0000226;4.24e-09;3!CL:0000842;4.24e-09;3!CL:0000623;1.02e-08;3!CL:0000815;6.56e-07;2!CL:0000792;6.56e-07;2!CL:0002677;6.56e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,5.46e-35,18;CL:0000789,5.46e-35,18;CL:0002420,5.46e-35,18;CL:0002419,5.46e-35,18;CL:0000790,5.46e-35,18;CL:0000084,1.67e-30,25;CL:0000827,1.67e-30,25;CL:0000838,8.74e-28,52;CL:0000542,4.03e-27,53;CL:0000051,4.03e-27,53;CL:0000625,1.74e-22,11;CL:0000738,1.04e-20,136;CL:0000037,9.03e-17,168;CL:0000624,1.41e-16,6;CL:0002087,3.74e-16,115;CL:0000988,2.24e-15,177;CL:0002031,1.02e-12,120;CL:0002032,1.01e-10,161;CL:0000837,1.01e-10,161;CL:0000784,8.03e-10,3;CL:0000898,2.40e-09,3;CL:0000226,3.93e-09,3;CL:0000842,3.93e-09,3;CL:0000623,7.11e-09,3;CL:0000825,7.11e-09,3;CL:0000815,6.49e-07,2;CL:0000792,6.49e-07,2;CL:0002677,6.49e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000790;1.21e-34;18!CL:0000051;3.50e-15;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!2.17e-11!112;UBERON:0002390!5.38e-11!102;UBERON:0003061!5.38e-11!102;UBERON:0002405!1.02e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0002390;3.08e-10;32!UBERON:0004177;2.79e-09;5!UBERON:0005057;2.79e-09;5!UBERON:0000178;1.22e-07;15!UBERON:0000179;1.22e-07;15!UBERON:0000463;1.22e-07;15!UBERON:0002193;1.66e-07;42!UBERON:0002370;3.16e-07;2!UBERON:0005058;3.16e-07;2!UBERON:0009113;3.16e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004177,7.87e-10,7;UBERON:0005057,7.87e-10,7;UBERON:0000178,1.16e-07,15;UBERON:0000179,1.16e-07,15;UBERON:0000463,1.16e-07,15;UBERON:0002370,2.62e-07,4;UBERON:0005058,2.62e-07,4;UBERON:0009113,2.62e-07,4;UBERON:0003295,2.62e-07,4;UBERON:0005562,2.62e-07,4;UBERON:0000974,9.38e-07,10 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0.229240217243854,0.410502947249729,0.314843125254717,0,0.767658796194425,0.309632246632152,0,0,0,0.309868802321207,0.142169232487422,1.17440175733939,1.66198622559563,0.200544447470142,0.868043482863407,0,0.647787332037959,0.257575567634187,0,0.377875943688809,0.242584061187816,0,1.23350366406548,0.309706370895104,0.28769239232215,0.256160706529101,0.47296445977717,0.344745680736619,0,0,0.564727018627814,0.545812300115692,0.674170453335254,0,0.641858054152187,0.639337125799041,0,0.199463657621632,0.852449501065388,0.580418477257168,0,0.622822248995575,0.502497330513487,0,0.434377689410233,0.605399502633369,1.47311054395026,0,0.211255286311942,0.212604299965044,0,0.22465726229299,0.150176892841506,0,0.285012743741249,0,0,0,0,0,0.853460445133014,0.400395987036012,2.29900975981793,1.98313461835459,0.954053754535364,0.569212969109448,1.76171156811282,1.52909291250092,0,0.560508562981536,0.790152254325231,4.52432471261816,2.75107533924415,2.05601498999509,0.83593247695339,5.86660079940463,4.73447805734733,3.89653456815823,1.22551502573691,4.41908861212256,4.65221178625604,5.68688113906533,0.384273959177026,0.780356085359269,0.822189523018381,0.829050053357545,0.579606171470105,7.71090128442714,9.89901063931938,6.27213142829861,0.226618685395132,2.68254345521345,2.06176467289578,4.30133476433155,3.50421955756506,2.60433381542567,0.950452044448374,2.40920190524436,1.79181255616186,1.24930726552346,2.36777252044017,4.92676798152628,2.82249440514625,2.67440195783507,1.73789284659359,0,0,0,0.361439152384566,0,0,0,0,0,0,0,0.0654895377488563,0,0,0.324547393654683,0.174129737299267,0.132957960518865,15.9788718284579,5.14795419702115,11.5151825412165,0,0,0,0,0,0,0.208994966536811,0,0,0.33472061276467,0,0,0,0,0,0,0,0,0,0,0,2.63560834872127,3.87780264148325,0,0,0,0.397227542439656,0,0,0,0,0,0,0.134710672069688,0,0.151357427644931,0.576175924479999,0,0,0,0,0,0,0,0,0,0.103325781175765,0,0,0,0,0,0,0,0,0,0.150238058906597,0,0,0,0,0.300091096084402,0,0,0,0.168776332241266,0,0,0.0920498986422993,0.161646056818812,0,0,0,0,0,0,0,0,0,0.207322110030741,0,0.36497735907583,0,0,0,0.928735856063958,0,0,0,0,0.110293972732394,0,0,0,0,0.38474715694639,0,0,0,0,0,0,0.590789906681404,2.6487785964879,0.614942192715568,0,0,0,0,0,0,0,0,0.115930404975077,0,0.577465791044295,0,0.190254152234598,0,0,0.246217006087397,0,0.297262324577456,0,0,0,0,0,0,0,0,0.414656231081544,0.432359860250884,0.12624243342638,0.126995788584338,0,0,0,0,0,0,0.224262168690721,0,0,0.129271715757778,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0.710783897485092,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0.179060963239896,0,3.94061520403854,1.94064817373566,3.20857590699371,0,0,0,0.167516265334349,0,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0,0.195801157462741,0,4.9624326269493,2.5885704098234,3.62873696531711,0.303127571446259,0,0,0,0,0,0.128139149255701,0,0.321707842287215,0,0,0,0,0.519254429183621,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,1.54227252690289,0,0,0,0,0,0,0,0,0.328014645699706,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0.0890320356467374,0,0,0,0,0.929691098594572,0.31481234683064,0,0,0,0,0.18532421910392,0,0,0,0,0,0,0.318203247925937,0,0,0,0,0.202182481573316,0,0,0,0,1.05650146756755,0,0.282810863907425,0,0,1.32687795048244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52234282769651,0,0.569647187174163,2.38231775457789,1.64544909234478,1.29694662238543,0,0.79312517629427,0,0,0,0.371606350251437,2.59684583357601,3.77051769746595,0.159426272728822,0,0.191505370132367,0.211673582723883,0,0,0.912938716132769,0,0,0,0.1605880751037,0,0,0.687010689511529,0,0,0.166849141711909,0,0,0,0,0.99921590399346,0,0,0.439524537815682,0,0,0,0.23874448473769,0,0.921482106297696,0,0,0.111308705022906,0.16480387422676,0,0,1.10513566212459,0,0.102268682502155,0.246169610922139,0,0,0,0.511572370226872,0.789147245095469,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0,0.113942055847001,0.23056390438806,0.0897576444097721,0.108647371922008,0,0,0,1.02193298195737,0,0,0,0,0,0,0,0,0.163232808159148,0.565412285735763,0,0,0.796118080530053,0.611030144933625,0.296521128680622,0.123563938946503,0.313265848516366,0.067401132980677,1.60515529459758,0.234264445725339,0.182454789215666,0,0,0,2.41981432097328,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0.0870592065804026,0,0,0,0,0,0.387956065953678,0,4.29363407483012,0,0,0,0,0,0.213452994739353,0,0,0.114536596165916,0,0,0,0,0,0,0,0,0,0.273810757783986,1.27746588066972,0.429765441419957,0.262887354279314,0,0,0.717873024576814,0,0.429226048136571,0.446342914883745,0.53746777989381,0,1.16495949527454,0.157566364614447,0.164831716762333,0.13480708770837,0,0.0846733320657845,0,0.136203406111576,0,0,0,0.674921674654501,1.5476039091159,0,0,0.551639951094387,0.734364233889974,0.105600336519406,0.179287339332845,0,0,0.662091970365432,0,0,0,0,0,0.082092520749339,0,0.113312091520126,0.293104467356165,0,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| |||
|short_description=p3@uc003qhq.1 | |||
}} |
Latest revision as of 20:03, 30 July 2015
Short description: | p3@uc003qhq.1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_uc003qhq.1_5end |
Coexpression cluster: | C1213_thymus_Dendritic_CD4_non_chronic_vein_CD133 |
Association with transcript: | 40bp_to_uc003qhq.1_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 5.46e-35 | 18 |
alpha-beta T cell | 5.46e-35 | 18 |
immature T cell | 5.46e-35 | 18 |
mature T cell | 5.46e-35 | 18 |
immature alpha-beta T cell | 5.46e-35 | 18 |
T cell | 1.67e-30 | 25 |
pro-T cell | 1.67e-30 | 25 |
lymphoid lineage restricted progenitor cell | 8.74e-28 | 52 |
lymphocyte | 4.03e-27 | 53 |
common lymphoid progenitor | 4.03e-27 | 53 |
CD8-positive, alpha-beta T cell | 1.74e-22 | 11 |
leukocyte | 1.04e-20 | 136 |
hematopoietic stem cell | 9.03e-17 | 168 |
CD4-positive, alpha-beta T cell | 1.41e-16 | 6 |
nongranular leukocyte | 3.74e-16 | 115 |
hematopoietic cell | 2.24e-15 | 177 |
hematopoietic lineage restricted progenitor cell | 1.02e-12 | 120 |
hematopoietic oligopotent progenitor cell | 1.01e-10 | 161 |
hematopoietic multipotent progenitor cell | 1.01e-10 | 161 |
plasmacytoid dendritic cell | 8.03e-10 | 3 |
naive T cell | 2.40e-09 | 3 |
single nucleate cell | 3.93e-09 | 3 |
mononuclear cell | 3.93e-09 | 3 |
natural killer cell | 7.11e-09 | 3 |
pro-NK cell | 7.11e-09 | 3 |
regulatory T cell | 6.49e-07 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 6.49e-07 | 2 |
naive regulatory T cell | 6.49e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
hemopoietic organ | 7.87e-10 | 7 |
immune organ | 7.87e-10 | 7 |
blood | 1.16e-07 | 15 |
haemolymphatic fluid | 1.16e-07 | 15 |
organism substance | 1.16e-07 | 15 |
thymus | 2.62e-07 | 4 |
hemolymphoid system gland | 2.62e-07 | 4 |
thymic region | 2.62e-07 | 4 |
pharyngeal gland | 2.62e-07 | 4 |
thymus primordium | 2.62e-07 | 4 |
neck | 9.38e-07 | 10 |