FFCP PHASE1:Hg19::chr6:30525064..30525098,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=80742 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21149 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000481741,ENST00000498336_5end | |||
|cluster_id=chr6:30525064..30525098,+ | |||
|coexpression_cluster_id=C4588 | |||
|description=CAGE_peak_1_at_PRR3_5end | |||
|id=chr6:30525064..30525098,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!2.31e-28!235;DOID:14566!6.24e-28!239;DOID:2531!6.40e-14!51;DOID:0060083!6.40e-14!51;DOID:0050687!7.33e-14!143;DOID:0050686!3.88e-12!137;DOID:1240!3.88e-12!39;DOID:8692!3.46e-09!31;DOID:305!2.93e-08!106;DOID:3095!5.10e-07!22;DOID:2994!5.10e-07!22 | |||
|ontology_enrichment_disease_v019=DOID:1240;1.01e-09;39!DOID:8692;7.10e-09;31!DOID:2531;8.73e-09;51!DOID:0060083;8.73e-09;51!DOID:3095;4.62e-07;22!DOID:2994;4.62e-07;22 | |||
|ontology_enrichment_disease_v019_2=DOID:162,2.31e-28,235;DOID:14566,6.24e-28,239;DOID:2531,6.40e-14,51;DOID:0060083,6.40e-14,51;DOID:0050687,7.33e-14,143;DOID:0050686,3.88e-12,137;DOID:1240,3.88e-12,39;DOID:8692,3.46e-09,31;DOID:305,2.93e-08,106;DOID:3095,5.10e-07,22;DOID:2994,5.10e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0000073!1.62e-14!94;UBERON:0001016!1.62e-14!94;UBERON:0005743!2.55e-12!86;UBERON:0002346!4.23e-12!90;UBERON:0001017!1.19e-11!82;UBERON:0000955!2.42e-10!69;UBERON:0006238!2.42e-10!69;UBERON:0003075!2.61e-10!86;UBERON:0007284!2.61e-10!86;UBERON:0003056!4.86e-09!61;UBERON:0000924!2.35e-08!173;UBERON:0006601!2.35e-08!173;UBERON:0001049!3.52e-08!57;UBERON:0005068!3.52e-08!57;UBERON:0006241!3.52e-08!57;UBERON:0007135!3.52e-08!57;UBERON:0002616!1.31e-07!59;UBERON:0001950!2.10e-07!20;UBERON:0002780!2.14e-07!41;UBERON:0001890!2.14e-07!41;UBERON:0006240!2.14e-07!41;UBERON:0000956!3.32e-07!25;UBERON:0000203!3.32e-07!25;UBERON:0004121!3.88e-07!169;UBERON:0002619!5.62e-07!22;UBERON:0003080!6.44e-07!42 | |||
|ontology_enrichment_uberon_v019=UBERON:0001950;2.14e-07;20!UBERON:0000956;3.48e-07;25!UBERON:0000203;3.48e-07;25!UBERON:0002619;6.04e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.62e-14,89;UBERON:0001017,4.17e-12,81;UBERON:0002346,1.57e-11,86;UBERON:0000955,8.24e-11,68;UBERON:0006238,8.24e-11,68;UBERON:0003075,9.34e-10,82;UBERON:0007284,9.34e-10,82;UBERON:0003056,1.42e-09,61;UBERON:0011216,2.25e-09,223;UBERON:0000073,1.07e-08,53;UBERON:0002616,1.07e-08,53;UBERON:0001049,1.25e-08,56;UBERON:0005068,1.25e-08,56;UBERON:0006241,1.25e-08,56;UBERON:0007135,1.25e-08,56;UBERON:0004121,8.99e-08,171;UBERON:0000924,8.99e-08,171;UBERON:0006601,8.99e-08,171;UBERON:0001950,2.10e-07,20;UBERON:0002780,2.14e-07,41;UBERON:0001890,2.14e-07,41;UBERON:0003080,2.14e-07,41;UBERON:0006240,2.14e-07,41;UBERON:0000956,3.32e-07,25;UBERON:0000203,3.32e-07,25;UBERON:0002619,5.62e-07,22 | |||
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151616 | |||
|short_description=p1@PRR3 | |||
}} |
Latest revision as of 16:53, 17 September 2015
Short description: | p1@PRR3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PRR3_5end |
Coexpression cluster: | C4588_neuroblastoma_neuroectodermal_osteosarcoma_medulloblastoma_acute_mesothelioma_small |
Association with transcript: | 0bp_to_ENST00000481741, ENST00000498336_5end |
EntrezGene: | PRR3 |
HGNC: | 21149 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nervous system | 2.62e-14 | 89 |
central nervous system | 4.17e-12 | 81 |
neurectoderm | 1.57e-11 | 86 |
brain | 8.24e-11 | 68 |
future brain | 8.24e-11 | 68 |
neural plate | 9.34e-10 | 82 |
presumptive neural plate | 9.34e-10 | 82 |
pre-chordal neural plate | 1.42e-09 | 61 |
organ system subdivision | 2.25e-09 | 223 |
regional part of nervous system | 1.07e-08 | 53 |
regional part of brain | 1.07e-08 | 53 |
neural tube | 1.25e-08 | 56 |
neural rod | 1.25e-08 | 56 |
future spinal cord | 1.25e-08 | 56 |
neural keel | 1.25e-08 | 56 |
ectoderm-derived structure | 8.99e-08 | 171 |
ectoderm | 8.99e-08 | 171 |
presumptive ectoderm | 8.99e-08 | 171 |
neocortex | 2.10e-07 | 20 |
regional part of forebrain | 2.14e-07 | 41 |
forebrain | 2.14e-07 | 41 |
anterior neural tube | 2.14e-07 | 41 |
future forebrain | 2.14e-07 | 41 |
cerebral cortex | 3.32e-07 | 25 |
pallium | 3.32e-07 | 25 |
regional part of cerebral cortex | 5.62e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
cancer | 2.31e-28 | 235 |
disease of cellular proliferation | 6.24e-28 | 239 |
hematologic cancer | 6.40e-14 | 51 |
immune system cancer | 6.40e-14 | 51 |
cell type cancer | 7.33e-14 | 143 |
organ system cancer | 3.88e-12 | 137 |
leukemia | 3.88e-12 | 39 |
myeloid leukemia | 3.46e-09 | 31 |
carcinoma | 2.93e-08 | 106 |
germ cell and embryonal cancer | 5.10e-07 | 22 |
germ cell cancer | 5.10e-07 | 22 |