FFCP PHASE1:Mm9::chr2:30837848..30837868,+: Difference between revisions
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{{FFCP|EntrezGene=74270|HGNC=|MCL_coexpression_id=60|UniProt=Q8C9A6|association_with_transcript=-14bp_to_ENSMUST00000061544_5end|description=CAGE_peak_2_at_Usp20_5end|id=chr2:30837848..30837868,+|ontology_enrichment_celltype=CL:0002319!4.09e-10!43;CL:0000221!4.72e-10!44;CL:0000133!4.72e-10!44;CL:0000540!6.56e-09!33;CL:0000047!6.56e-09!33;CL:0000031!6.56e-09!33;CL:0000404!6.56e-09!33;CL:0000055!2.36e-08!50;CL:0000117!2.60e-08!23;CL:0000337!2.60e-08!23;CL:0000393!5.34e-07!39;CL:0000211!5.34e-07!39|ontology_enrichment_celltype_v019_2=CL:0002319,3.94e-10,43;CL:0000221,4.55e-10,44;CL:0000133,4.55e-10,44;CL:0000540,6.34e-09,33;CL:0000047,6.34e-09,33;CL:0000031,6.34e-09,33;CL:0000404,6.34e-09,33;CL:0000117,2.53e-08,23;CL:0000337,2.53e-08,23;CL:0000393,5.53e-07,39;CL:0000211,5.53e-07,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.04e-25!73;UBERON:0005743!2.04e-25!73;UBERON:0000073!9.24e-25!75;UBERON:0001016!9.24e-25!75;UBERON:0004121!1.08e-24!102;UBERON:0000924!1.08e-24!102;UBERON:0006601!1.08e-24!102;UBERON:0001049!1.39e-19!52;UBERON:0005068!1.39e-19!52;UBERON:0006241!1.39e-19!52;UBERON:0007135!1.39e-19!52;UBERON:0002346!2.69e-19!71;UBERON:0003075!2.69e-19!71;UBERON:0007284!2.69e-19!71;UBERON:0000955!4.02e-19!50;UBERON:0006238!4.02e-19!50;UBERON:0002616!1.39e-18!49;UBERON:0000033!3.68e-18!63;UBERON:0002020!2.85e-14!34;UBERON:0003080!3.84e-14!40;UBERON:0002780!1.24e-13!39;UBERON:0001890!1.24e-13!39;UBERON:0006240!1.24e-13!39;UBERON:0003056!5.02e-13!49;UBERON:0002791!3.26e-12!29;UBERON:0003528!3.26e-12!29;UBERON:0001893!3.26e-12!29;UBERON:0000956!6.68e-10!21;UBERON:0001869!6.68e-10!21;UBERON:0000203!6.68e-10!21;UBERON:0002619!2.83e-09!17;UBERON:0002021!1.38e-07!10;UBERON:0000411!1.38e-07!10;UBERON:0001950!1.38e-07!10;UBERON:0004111!2.70e-07!122|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.84e-25,73;UBERON:0001016,8.32e-25,75;UBERON:0004121,1.29e-23,95;UBERON:0000924,1.29e-23,95;UBERON:0006601,1.29e-23,95;UBERON:0000073,7.13e-21,54;UBERON:0001049,1.29e-19,52;UBERON:0005068,1.29e-19,52;UBERON:0006241,1.29e-19,52;UBERON:0007135,1.29e-19,52;UBERON:0010371,6.39e-19,73;UBERON:0002346,1.50e-18,64;UBERON:0003075,1.50e-18,64;UBERON:0007284,1.50e-18,64;UBERON:0000955,2.69e-17,47;UBERON:0006238,2.69e-17,47;UBERON:0002616,9.04e-17,46;UBERON:0010314,6.02e-15,92;UBERON:0002020,2.70e-14,34;UBERON:0003080,3.62e-14,40;UBERON:0002780,1.17e-13,39;UBERON:0001890,1.17e-13,39;UBERON:0006240,1.17e-13,39;UBERON:0003056,4.76e-13,49;UBERON:0003528,3.11e-12,29;UBERON:0002791,3.11e-12,29;UBERON:0001893,3.11e-12,29;UBERON:0000956,6.43e-10,21;UBERON:0001869,6.43e-10,21;UBERON:0000203,6.43e-10,21;UBERON:0002619,2.73e-09,17;UBERON:0002021,1.35e-07,10;UBERON:0000411,1.35e-07,10;UBERON:0001950,1.35e-07,10;UBERON:0004111,3.23e-07,122|phase1_expression=3.84357233051505,1.74487703819681,1.81999695755814,3.62957053568196,3.50627010962443,0.839396359559449,1.16806320297763,0.774739940649458,0.703943610758334,0.468129052643987,1.71217968225505,1.11681022593471,1.54080656938085,1.04904482902797,0,1.82227740650843,0,1.89277299214943,1.23402990245165,0.42438965179803,6.97354979238772,0.992909512008853,1.04479915655574,1.43993180514066,1.37645568640302,0.57423196411502,1.29228598847722,0.646413698057667,1.33016393619462,1.00812051903972,0.665191531965914,2.54012269383853,4.92051830067656,15.8481681015439,0,0.664938581433969,1.02084678131185,0.837063261473815,0,1.0470474879476,0,0.683045484958446,0.971020706062307,1.25896817975577,2.12891555560981,2.0190142737785,2.34717403304412,4.36050312760893,3.07560655828261,3.30530828426282,2.79972843250725,4.31257693094915,1.34226084846189,0,1.34437519656986,0.771778308107841,1.71920063963254,3.6097046459421,2.83243045203437,6.34789175126439,5.07065122804943,1.35537812827653,2.66788438833342,4.04954872776629,13.8441290759376,4.2628806896766,3.89480143673926,8.4528027170742,3.7328260431052,4.05017814995072,2.10324961351382,5.99867067247988,7.28866185140325,3.30725157880376,3.83381884072945,8.27296907949019,9.91042928994498,9.3211756802187,10.4452442614246,3.56092976871523,2.74462930807229,2.08365348222704,11.1673199600552,9.56696437053856,7.18151764551008,3.83017161115768,5.97961059356232,4.28718725398191,1.8931548333296,2.19157524309678,3.47837386442013,2.58127163094416,1.3599426674155,1.07940638327563,3.24888208723835,2.24013443548668,1.96622188184453,2.89731548382698,2.07828803682295,3.88673531961374,2.39433813620357,0,5.09610479413291,0,1.08245520505607,1.26679932737549,1.01104889002957,2.62622923353838,2.07150306917737,4.89859058913922,0.867426633830679,2.74018930480927,4.61230994512117,3.3158980921577,3.99801604261396,3.14166478324189,1.23597483867187,2.31358971071859,0.884610551949874,1.7794353494215,2.20841518460394,1.93950101254089,5.59175283654366,6.73395833126558,9.63454851341893,0.766371165625774,0.958520996047362,0.599902730993408,0.254140454146129,7.48953197024113,7.77751024791665,4.52355667606312,8.8650403298061,12.5300574091862,8.93488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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=74270 | |||
|HGNC= | |||
|MCL_coexpression_id=60 | |||
|TSSclassifier=NA | |||
|UniProt=Q8C9A6 | |||
|association_with_transcript=-14bp_to_ENSMUST00000061544_5end | |||
|cluster_id=chr2:30837848..30837868,+ | |||
|description=CAGE_peak_2_at_Usp20_5end | |||
|id=chr2:30837848..30837868,+ | |||
|ontology_enrichment_celltype=CL:0002319!4.09e-10!43;CL:0000221!4.72e-10!44;CL:0000133!4.72e-10!44;CL:0000540!6.56e-09!33;CL:0000047!6.56e-09!33;CL:0000031!6.56e-09!33;CL:0000404!6.56e-09!33;CL:0000055!2.36e-08!50;CL:0000117!2.60e-08!23;CL:0000337!2.60e-08!23;CL:0000393!5.34e-07!39;CL:0000211!5.34e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,3.94e-10,43;CL:0000221,4.55e-10,44;CL:0000133,4.55e-10,44;CL:0000540,6.34e-09,33;CL:0000047,6.34e-09,33;CL:0000031,6.34e-09,33;CL:0000404,6.34e-09,33;CL:0000117,2.53e-08,23;CL:0000337,2.53e-08,23;CL:0000393,5.53e-07,39;CL:0000211,5.53e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.04e-25!73;UBERON:0005743!2.04e-25!73;UBERON:0000073!9.24e-25!75;UBERON:0001016!9.24e-25!75;UBERON:0004121!1.08e-24!102;UBERON:0000924!1.08e-24!102;UBERON:0006601!1.08e-24!102;UBERON:0001049!1.39e-19!52;UBERON:0005068!1.39e-19!52;UBERON:0006241!1.39e-19!52;UBERON:0007135!1.39e-19!52;UBERON:0002346!2.69e-19!71;UBERON:0003075!2.69e-19!71;UBERON:0007284!2.69e-19!71;UBERON:0000955!4.02e-19!50;UBERON:0006238!4.02e-19!50;UBERON:0002616!1.39e-18!49;UBERON:0000033!3.68e-18!63;UBERON:0002020!2.85e-14!34;UBERON:0003080!3.84e-14!40;UBERON:0002780!1.24e-13!39;UBERON:0001890!1.24e-13!39;UBERON:0006240!1.24e-13!39;UBERON:0003056!5.02e-13!49;UBERON:0002791!3.26e-12!29;UBERON:0003528!3.26e-12!29;UBERON:0001893!3.26e-12!29;UBERON:0000956!6.68e-10!21;UBERON:0001869!6.68e-10!21;UBERON:0000203!6.68e-10!21;UBERON:0002619!2.83e-09!17;UBERON:0002021!1.38e-07!10;UBERON:0000411!1.38e-07!10;UBERON:0001950!1.38e-07!10;UBERON:0004111!2.70e-07!122 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.84e-25,73;UBERON:0001016,8.32e-25,75;UBERON:0004121,1.29e-23,95;UBERON:0000924,1.29e-23,95;UBERON:0006601,1.29e-23,95;UBERON:0000073,7.13e-21,54;UBERON:0001049,1.29e-19,52;UBERON:0005068,1.29e-19,52;UBERON:0006241,1.29e-19,52;UBERON:0007135,1.29e-19,52;UBERON:0010371,6.39e-19,73;UBERON:0002346,1.50e-18,64;UBERON:0003075,1.50e-18,64;UBERON:0007284,1.50e-18,64;UBERON:0000955,2.69e-17,47;UBERON:0006238,2.69e-17,47;UBERON:0002616,9.04e-17,46;UBERON:0010314,6.02e-15,92;UBERON:0002020,2.70e-14,34;UBERON:0003080,3.62e-14,40;UBERON:0002780,1.17e-13,39;UBERON:0001890,1.17e-13,39;UBERON:0006240,1.17e-13,39;UBERON:0003056,4.76e-13,49;UBERON:0003528,3.11e-12,29;UBERON:0002791,3.11e-12,29;UBERON:0001893,3.11e-12,29;UBERON:0000956,6.43e-10,21;UBERON:0001869,6.43e-10,21;UBERON:0000203,6.43e-10,21;UBERON:0002619,2.73e-09,17;UBERON:0002021,1.35e-07,10;UBERON:0000411,1.35e-07,10;UBERON:0001950,1.35e-07,10;UBERON:0004111,3.23e-07,122 | |||
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| |||
|short_description=p2@Usp20 | |||
}} |
Latest revision as of 13:27, 26 September 2015
Short description: | p2@Usp20 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Usp20_5end |
Coexpression cluster: | MCL_coexpression_mm9:60 |
Association with transcript: | -14bp_to_ENSMUST00000061544_5end |
EntrezGene: | Usp20 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 3.94e-10 | 43 |
ectodermal cell | 4.55e-10 | 44 |
neurectodermal cell | 4.55e-10 | 44 |
neuron | 6.34e-09 | 33 |
neuronal stem cell | 6.34e-09 | 33 |
neuroblast | 6.34e-09 | 33 |
electrically signaling cell | 6.34e-09 | 33 |
CNS neuron (sensu Vertebrata) | 2.53e-08 | 23 |
neuroblast (sensu Vertebrata) | 2.53e-08 | 23 |
electrically responsive cell | 5.53e-07 | 39 |
electrically active cell | 5.53e-07 | 39 |