FFCP PHASE1:Mm9::chr4:20705999..20706023,-: Difference between revisions
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{{FFCP|EntrezGene=269513|HGNC=|MCL_coexpression_id=13|UniProt=Q3URJ8|association_with_transcript=0bp_to_ENSMUST00000102998_5end|description=CAGE_peak_2_at_Nkain3_5end|id=chr4:20705999..20706023,-|ontology_enrichment_celltype=CL:0000117!1.19e-12!23;CL:0000337!1.19e-12!23;CL:0000393!2.03e-12!39;CL:0000211!2.03e-12!39;CL:0000540!1.11e-10!33;CL:0000047!1.11e-10!33;CL:0000031!1.11e-10!33;CL:0000404!1.11e-10!33;CL:0000055!3.08e-08!50;CL:0002319!3.81e-07!43;CL:0000221!3.91e-07!44;CL:0000133!3.91e-07!44|ontology_enrichment_celltype_v019_2=CL:0000117,1.13e-17,23;CL:0000337,1.13e-17,23;CL:0000393,1.71e-14,39;CL:0000211,1.71e-14,39;CL:0000540,2.87e-12,33;CL:0000047,2.87e-12,33;CL:0000031,2.87e-12,33;CL:0000404,2.87e-12,33;CL:0002319,1.55e-07,43;CL:0000221,3.40e-07,44;CL:0000133,3.40e-07,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!9.23e-21!73;UBERON:0005743!9.23e-21!73;UBERON:0001049!1.88e-20!52;UBERON:0005068!1.88e-20!52;UBERON:0006241!1.88e-20!52;UBERON:0007135!1.88e-20!52;UBERON:0000073!1.12e-19!75;UBERON:0001016!1.12e-19!75;UBERON:0000955!1.36e-18!50;UBERON:0006238!1.36e-18!50;UBERON:0002346!2.62e-18!71;UBERON:0003075!2.62e-18!71;UBERON:0007284!2.62e-18!71;UBERON:0002616!2.66e-18!49;UBERON:0000033!1.95e-17!63;UBERON:0003056!3.17e-17!49;UBERON:0003080!3.88e-17!40;UBERON:0002020!6.81e-17!34;UBERON:0002780!2.07e-16!39;UBERON:0001890!2.07e-16!39;UBERON:0006240!2.07e-16!39;UBERON:0004121!4.07e-16!102;UBERON:0000924!4.07e-16!102;UBERON:0006601!4.07e-16!102;UBERON:0002791!5.44e-14!29;UBERON:0003528!5.44e-14!29;UBERON:0001893!5.44e-14!29;UBERON:0000956!1.59e-09!21;UBERON:0001869!1.59e-09!21;UBERON:0000203!1.59e-09!21;UBERON:0000025!9.63e-09!114;UBERON:0007811!4.27e-08!86;UBERON:0004111!5.69e-08!122;UBERON:0000153!1.52e-07!94;UBERON:0002619!1.62e-07!17;UBERON:0000468!8.04e-07!333|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.06e-27,54;UBERON:0001049,5.33e-26,52;UBERON:0005068,5.33e-26,52;UBERON:0006241,5.33e-26,52;UBERON:0007135,5.33e-26,52;UBERON:0001017,5.00e-24,73;UBERON:0001016,6.92e-23,75;UBERON:0002020,1.15e-22,34;UBERON:0003080,1.62e-22,40;UBERON:0002346,4.13e-22,64;UBERON:0003075,4.13e-22,64;UBERON:0007284,4.13e-22,64;UBERON:0002780,1.76e-21,39;UBERON:0001890,1.76e-21,39;UBERON:0006240,1.76e-21,39;UBERON:0000955,2.75e-21,47;UBERON:0006238,2.75e-21,47;UBERON:0002616,7.19e-21,46;UBERON:0003056,3.40e-20,49;UBERON:0003528,1.77e-18,29;UBERON:0002791,1.77e-18,29;UBERON:0001893,1.77e-18,29;UBERON:0010371,2.46e-17,73;UBERON:0004121,2.76e-17,95;UBERON:0000924,2.76e-17,95;UBERON:0006601,2.76e-17,95;UBERON:0010314,3.45e-17,92;UBERON:0000956,4.52e-12,21;UBERON:0001869,4.52e-12,21;UBERON:0000203,4.52e-12,21;UBERON:0000025,9.10e-11,114;UBERON:0002619,3.28e-09,17;UBERON:0004111,5.54e-09,122;UBERON:0002420,8.70e-08,8;UBERON:0007245,8.70e-08,8;UBERON:0010009,8.70e-08,8;UBERON:0010011,8.70e-08,8;UBERON:0000454,8.70e-08,8;UBERON:0002021,3.17e-07,10;UBERON:0000411,3.17e-07,10;UBERON:0001950,3.17e-07,10|phase1_expression=0.80074423552397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.87095238332354,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00717454380462,1.01376931219515,0.183546752161682,0,0.872100625521786,0,0.388859798148567,0.139986421625363,0,0,0,0,9.51859913333004,2.57880095944881,4.12537673821954,1.82084814773638,3.70293685490423,1.90149421051854,0,0.889294796111139,0,0,0,0,0.768436610643109,1.65903379693564,3.10513658162888,2.73422449756797,1.99955689082663,2.65042249141936,2.9397791811589,1.91690942036473,1.83843757322004,1.10115880999389,3.70293280447044,4.30098293117482,2.37395317914349,3.65950574409639,3.64639359389732,1.3959149950069,3.37657566019008,7.18151764551008,5.30331453852602,5.83723891276322,2.60959224155421,0,0.0755715601067855,0,0,0,0,0,0,0.140444420131752,0,0,0,0.422530259330042,0,0,0,0,0,0,0.11418387971906,0,0.148442139064825,0.520455980298408,0.913396434936424,0.691846491768175,0.150722640552623,0.352766121407114,0,0,0.289198713839823,0,0.323533699894818,0,0,0,0.292780797011547,0.209446706813455,0,0,0,0,7.04016005202667,3.66000482254901,6.40837195775608,5.73620256634512,4.85859368927628,3.94797284663164,8.11206315338788,3.1570202793598,0.124406970610093,0.252722758433675,0.210441855886474,0.130120442962704,1.14951052216736,0.720248519221397,1.20563854268572,0.544291993210623,1.5373646434182,0.374806898238915,1.29351685369508,0,0.756424320671277,0.351902248327898,0.219195732427575,0.556094498451196,0.696504333044333,0.205782136407943,0.59710280045548,0,0,0,0.621377317606506,0.469052119962192,0.36012412292203,1.18372367792605,1.37734962223183,0.462801338662135,1.86027155800326,1.3413670069981,0.817357396570186,0.658239399653922,1.31333971263276,0.324275238183423,0,0.439100230582101,0.134206418760372,11.9865270681553,5.76265829323993,0,0,0.213288250535234,0.928946687441754,0.38660238396628,0.80673409849337,0.889512175379481,0.190225626112559,0,0.494096864172033,0.251335208800269,0,0,0,0.216138049874694,0,0.948339504765408,1.71372768914593,0,2.036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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=269513 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|TSSclassifier=NA | |||
|UniProt=Q3URJ8 | |||
|association_with_transcript=0bp_to_ENSMUST00000102998_5end | |||
|cluster_id=chr4:20705999..20706023,- | |||
|description=CAGE_peak_2_at_Nkain3_5end | |||
|id=chr4:20705999..20706023,- | |||
|ontology_enrichment_celltype=CL:0000117!1.19e-12!23;CL:0000337!1.19e-12!23;CL:0000393!2.03e-12!39;CL:0000211!2.03e-12!39;CL:0000540!1.11e-10!33;CL:0000047!1.11e-10!33;CL:0000031!1.11e-10!33;CL:0000404!1.11e-10!33;CL:0000055!3.08e-08!50;CL:0002319!3.81e-07!43;CL:0000221!3.91e-07!44;CL:0000133!3.91e-07!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.13e-17,23;CL:0000337,1.13e-17,23;CL:0000393,1.71e-14,39;CL:0000211,1.71e-14,39;CL:0000540,2.87e-12,33;CL:0000047,2.87e-12,33;CL:0000031,2.87e-12,33;CL:0000404,2.87e-12,33;CL:0002319,1.55e-07,43;CL:0000221,3.40e-07,44;CL:0000133,3.40e-07,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!9.23e-21!73;UBERON:0005743!9.23e-21!73;UBERON:0001049!1.88e-20!52;UBERON:0005068!1.88e-20!52;UBERON:0006241!1.88e-20!52;UBERON:0007135!1.88e-20!52;UBERON:0000073!1.12e-19!75;UBERON:0001016!1.12e-19!75;UBERON:0000955!1.36e-18!50;UBERON:0006238!1.36e-18!50;UBERON:0002346!2.62e-18!71;UBERON:0003075!2.62e-18!71;UBERON:0007284!2.62e-18!71;UBERON:0002616!2.66e-18!49;UBERON:0000033!1.95e-17!63;UBERON:0003056!3.17e-17!49;UBERON:0003080!3.88e-17!40;UBERON:0002020!6.81e-17!34;UBERON:0002780!2.07e-16!39;UBERON:0001890!2.07e-16!39;UBERON:0006240!2.07e-16!39;UBERON:0004121!4.07e-16!102;UBERON:0000924!4.07e-16!102;UBERON:0006601!4.07e-16!102;UBERON:0002791!5.44e-14!29;UBERON:0003528!5.44e-14!29;UBERON:0001893!5.44e-14!29;UBERON:0000956!1.59e-09!21;UBERON:0001869!1.59e-09!21;UBERON:0000203!1.59e-09!21;UBERON:0000025!9.63e-09!114;UBERON:0007811!4.27e-08!86;UBERON:0004111!5.69e-08!122;UBERON:0000153!1.52e-07!94;UBERON:0002619!1.62e-07!17;UBERON:0000468!8.04e-07!333 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.06e-27,54;UBERON:0001049,5.33e-26,52;UBERON:0005068,5.33e-26,52;UBERON:0006241,5.33e-26,52;UBERON:0007135,5.33e-26,52;UBERON:0001017,5.00e-24,73;UBERON:0001016,6.92e-23,75;UBERON:0002020,1.15e-22,34;UBERON:0003080,1.62e-22,40;UBERON:0002346,4.13e-22,64;UBERON:0003075,4.13e-22,64;UBERON:0007284,4.13e-22,64;UBERON:0002780,1.76e-21,39;UBERON:0001890,1.76e-21,39;UBERON:0006240,1.76e-21,39;UBERON:0000955,2.75e-21,47;UBERON:0006238,2.75e-21,47;UBERON:0002616,7.19e-21,46;UBERON:0003056,3.40e-20,49;UBERON:0003528,1.77e-18,29;UBERON:0002791,1.77e-18,29;UBERON:0001893,1.77e-18,29;UBERON:0010371,2.46e-17,73;UBERON:0004121,2.76e-17,95;UBERON:0000924,2.76e-17,95;UBERON:0006601,2.76e-17,95;UBERON:0010314,3.45e-17,92;UBERON:0000956,4.52e-12,21;UBERON:0001869,4.52e-12,21;UBERON:0000203,4.52e-12,21;UBERON:0000025,9.10e-11,114;UBERON:0002619,3.28e-09,17;UBERON:0004111,5.54e-09,122;UBERON:0002420,8.70e-08,8;UBERON:0007245,8.70e-08,8;UBERON:0010009,8.70e-08,8;UBERON:0010011,8.70e-08,8;UBERON:0000454,8.70e-08,8;UBERON:0002021,3.17e-07,10;UBERON:0000411,3.17e-07,10;UBERON:0001950,3.17e-07,10 | |||
|phase1_expression=0.80074423552397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.87095238332354,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00717454380462,1.01376931219515,0.183546752161682,0,0.872100625521786,0,0.388859798148567,0.139986421625363,0,0,0,0,9.51859913333004,2.57880095944881,4.12537673821954,1.82084814773638,3.70293685490423,1.90149421051854,0,0.889294796111139,0,0,0,0,0.768436610643109,1.65903379693564,3.10513658162888,2.73422449756797,1.99955689082663,2.65042249141936,2.9397791811589,1.91690942036473,1.83843757322004,1.10115880999389,3.70293280447044,4.30098293117482,2.37395317914349,3.65950574409639,3.64639359389732,1.3959149950069,3.37657566019008,7.18151764551008,5.30331453852602,5.83723891276322,2.60959224155421,0,0.0755715601067855,0,0,0,0,0,0,0.140444420131752,0,0,0,0.422530259330042,0,0,0,0,0,0,0.11418387971906,0,0.148442139064825,0.520455980298408,0.913396434936424,0.691846491768175,0.150722640552623,0.352766121407114,0,0,0.289198713839823,0,0.323533699894818,0,0,0,0.292780797011547,0.209446706813455,0,0,0,0,7.04016005202667,3.66000482254901,6.40837195775608,5.73620256634512,4.85859368927628,3.94797284663164,8.11206315338788,3.1570202793598,0.124406970610093,0.252722758433675,0.210441855886474,0.130120442962704,1.14951052216736,0.720248519221397,1.20563854268572,0.544291993210623,1.5373646434182,0.374806898238915,1.29351685369508,0,0.756424320671277,0.351902248327898,0.219195732427575,0.556094498451196,0.696504333044333,0.205782136407943,0.59710280045548,0,0,0,0.621377317606506,0.469052119962192,0.36012412292203,1.18372367792605,1.37734962223183,0.462801338662135,1.86027155800326,1.3413670069981,0.817357396570186,0.658239399653922,1.31333971263276,0.324275238183423,0,0.439100230582101,0.134206418760372,11.9865270681553,5.76265829323993,0,0,0.213288250535234,0.928946687441754,0.38660238396628,0.80673409849337,0.889512175379481,0.190225626112559,0,0.494096864172033,0.251335208800269,0,0,0,0.216138049874694,0,0.948339504765408,1.71372768914593,0,2.03651327845314,0.969762435838129,0.98190147846446,0.379419222745544,0,0.156998727841375,0,0,0.667380422864376,0,0,0,0,0,0,0.162135226775035,0,0,0,0,0,0,0,0,0.37898282354097,0.325929952884052,0.509235257325564,0.234690248288502,0.167506257441816,0.238043640886014,0.585400943573396,0,0,0,0,0,0,0,0,0,0,3.05046120976805,3.16471553798949,0,0,0,0.390438744296638,0.215423397732799,0,0.222798674082394,0.566153061577665,2.42886421004937,0.584511715822624,2.37172666767914,1.28528526568723,1.27746076687442,1.06839362200353,1.30309567482861,4.45419332025846,0,0.242780636154981,0.302323556964751,0,0,0.614870295887855,0,0.363533729477506,1.06949213515416,0,1.05418608574999,0,0,0.36012218806262,0.258717367565509,1.92903331528433,4.96552654198366,5.70780216326626,4.27827453565514,1.2178597964584,0,0,0,0.65954501176592,0.161464426695906,0.301564624640779,0.596861720015682,0,0.291480836629851,4.82105785227325,0,0.206386867963223,0.370389054739423,0,0,0,0,0,0,0,0,1.21991680276109,1.08005340821801,1.25452977608681,0.655087691238533,1.21377911746339,0.41326727862668,0,0,0,0,0.747582730219894,0.165458490457098,0,0.645799117388655,0.337912250981556,1.05621514781179,0.5208175393758,0.209718688851422,0,0.288030006257865,0,0.608175645870493,0.205421914329655,0.129920822977795,0.358053391334963,0.198681354781265,0.120195449519969,0,0.100966449948148,0,0,0,0,0,0,0,0,0,0.965947970160952,1.12609485270709,5.49454872801795,0.857473516316263,0,5.64751842617067,5.06357760157895,7.44764167471216,2.92150409984269,2.05524755931193,1.5107877947794,0.675022500231806,3.60256962579376,2.71885445390523,2.07104124700728,0.415149390336707,0.798049746802062,1.02440163452481,0.486213434136588,1.04806581313991,0.919217542250071,2.00022055021454,1.44224540067226,1.60459604795908,1.01078884705519,1.01391719956096,1.69763707247469,1.77918864192777,1.40855335290712,1.7230640686684,1.42888107384922,1.62238056322798,1.92909220463705,1.23625770240992,1.76638704161277,1.71434626192708,1.59728225543404,1.43061713968393,2.76158191601424,1.12931256498397,1.77690676572521,2.0122077016005,1.8414879800649,1.7654534799962,0.561142271657738,1.06771516311757,0.985044823755635,2.45538625901814,1.85924209423159,0.771626443924566,0.499621155875892,0.935726433781634,0.644613162144895,0.382576664137687,0.661774257358546,0.695603506861264 | |||
|short_description=p2@Nkain3 | |||
}} |
Latest revision as of 21:14, 26 September 2015
Short description: | p2@Nkain3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Nkain3_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | 0bp_to_ENSMUST00000102998_5end |
EntrezGene: | Nkain3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.13e-17 | 23 |
neuroblast (sensu Vertebrata) | 1.13e-17 | 23 |
electrically responsive cell | 1.71e-14 | 39 |
electrically active cell | 1.71e-14 | 39 |
neuron | 2.87e-12 | 33 |
neuronal stem cell | 2.87e-12 | 33 |
neuroblast | 2.87e-12 | 33 |
electrically signaling cell | 2.87e-12 | 33 |
neural cell | 1.55e-07 | 43 |
ectodermal cell | 3.40e-07 | 44 |
neurectodermal cell | 3.40e-07 | 44 |