FF:12235-129G3: Difference between revisions

Latest revision as of 18:35, 4 June 2020

Name:	amniotic membrane cells, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs12502
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	amnion
dev stage	NA
sex	NA
age	NA
cell type	unclassifiable
cell line	NA
company	NA
collaboration	Hiroo Toyoda (Tokyo University of Pharm and life sciences)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005437

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12502		CAGE		DRX008537		DRR009409

Accession ID Hg19

Library id		BAM		CTSS
CNhs12502		DRZ000834		DRZ002219

Accession ID Hg38

Library id		BAM		CTSS
CNhs12502		DRZ012184		DRZ013569

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.317
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.638
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	1.282
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.0499
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.138
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.104
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.235
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.274
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0.427
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.306
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0.291
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.638
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	1.469
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.45
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.603
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.17
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0.093
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.464
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.339
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.51
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0.481
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.0454
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.341
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.386
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0.498
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.17
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	1.052
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.924
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12502

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00378
MA0003.1	MA0003.1	0.994
MA0004.1	MA0004.1	0.469
MA0006.1	MA0006.1	0.00643
MA0007.1	MA0007.1	0.997
MA0009.1	MA0009.1	0.912
MA0014.1	MA0014.1	0.0533
MA0017.1	MA0017.1	0.106
MA0018.2	MA0018.2	0.81
MA0019.1	MA0019.1	0.183
MA0024.1	MA0024.1	0.0219
MA0025.1	MA0025.1	0.366
MA0027.1	MA0027.1	0.409
MA0028.1	MA0028.1	0.227
MA0029.1	MA0029.1	0.106
MA0030.1	MA0030.1	0.503
MA0031.1	MA0031.1	0.396
MA0035.2	MA0035.2	0.193
MA0038.1	MA0038.1	0.212
MA0039.2	MA0039.2	6.88265e-4
MA0040.1	MA0040.1	0.521
MA0041.1	MA0041.1	0.301
MA0042.1	MA0042.1	0.744
MA0043.1	MA0043.1	0.0901
MA0046.1	MA0046.1	0.175
MA0047.2	MA0047.2	0.493
MA0048.1	MA0048.1	0.359
MA0050.1	MA0050.1	0.00288
MA0051.1	MA0051.1	0.095
MA0052.1	MA0052.1	0.54
MA0055.1	MA0055.1	0.706
MA0057.1	MA0057.1	0.848
MA0058.1	MA0058.1	0.223
MA0059.1	MA0059.1	0.0464
MA0060.1	MA0060.1	0.202
MA0061.1	MA0061.1	7.29636e-4
MA0062.2	MA0062.2	8.17674e-4
MA0065.2	MA0065.2	0.8
MA0066.1	MA0066.1	0.67
MA0067.1	MA0067.1	0.245
MA0068.1	MA0068.1	0.312
MA0069.1	MA0069.1	0.672
MA0070.1	MA0070.1	0.734
MA0071.1	MA0071.1	0.484
MA0072.1	MA0072.1	0.505
MA0073.1	MA0073.1	0.889
MA0074.1	MA0074.1	0.534
MA0076.1	MA0076.1	0.0246
MA0077.1	MA0077.1	0.658
MA0078.1	MA0078.1	0.926
MA0079.2	MA0079.2	0.124
MA0080.2	MA0080.2	5.98483e-9
MA0081.1	MA0081.1	0.0159
MA0083.1	MA0083.1	0.444
MA0084.1	MA0084.1	0.55
MA0087.1	MA0087.1	0.327
MA0088.1	MA0088.1	0.149
MA0090.1	MA0090.1	1.18572e-8
MA0091.1	MA0091.1	0.289
MA0092.1	MA0092.1	0.541
MA0093.1	MA0093.1	0.434
MA0099.2	MA0099.2	4.31633e-8
MA0100.1	MA0100.1	0.367
MA0101.1	MA0101.1	5.81523e-4
MA0102.2	MA0102.2	0.163
MA0103.1	MA0103.1	1.89087e-7
MA0104.2	MA0104.2	0.0156
MA0105.1	MA0105.1	0.00383
MA0106.1	MA0106.1	0.817
MA0107.1	MA0107.1	1.39122e-4
MA0108.2	MA0108.2	9.08491e-6
MA0111.1	MA0111.1	0.977
MA0112.2	MA0112.2	0.84
MA0113.1	MA0113.1	0.193
MA0114.1	MA0114.1	0.44
MA0115.1	MA0115.1	0.432
MA0116.1	MA0116.1	0.063
MA0117.1	MA0117.1	0.796
MA0119.1	MA0119.1	0.619
MA0122.1	MA0122.1	0.36
MA0124.1	MA0124.1	0.913
MA0125.1	MA0125.1	0.416
MA0131.1	MA0131.1	0.836
MA0135.1	MA0135.1	0.638
MA0136.1	MA0136.1	5.30519e-8
MA0137.2	MA0137.2	0.111
MA0138.2	MA0138.2	0.733
MA0139.1	MA0139.1	0.404
MA0140.1	MA0140.1	0.962
MA0141.1	MA0141.1	0.0325
MA0142.1	MA0142.1	0.871
MA0143.1	MA0143.1	0.655
MA0144.1	MA0144.1	0.452
MA0145.1	MA0145.1	0.109
MA0146.1	MA0146.1	0.0566
MA0147.1	MA0147.1	0.036
MA0148.1	MA0148.1	0.68
MA0149.1	MA0149.1	0.925
MA0150.1	MA0150.1	0.539
MA0152.1	MA0152.1	0.291
MA0153.1	MA0153.1	0.289
MA0154.1	MA0154.1	0.234
MA0155.1	MA0155.1	0.487
MA0156.1	MA0156.1	1.19437e-8
MA0157.1	MA0157.1	0.959
MA0159.1	MA0159.1	0.619
MA0160.1	MA0160.1	0.882
MA0162.1	MA0162.1	0.543
MA0163.1	MA0163.1	0.0826
MA0164.1	MA0164.1	0.21
MA0258.1	MA0258.1	0.0917
MA0259.1	MA0259.1	0.746

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12502

Novel motif	Logo	P-value
1	1	0.871
10	10	0.694
100	100	0.382
101	101	0.162
102	102	0.555
103	103	0.501
104	104	0.551
105	105	0.301
106	106	0.291
107	107	0.341
108	108	0.0772
109	109	0.0052
11	11	0.509
110	110	0.44
111	111	0.726
112	112	0.738
113	113	0.00165
114	114	0.784
115	115	0.624
116	116	0.274
117	117	0.29
118	118	0.00954
119	119	0.828
12	12	0.702
120	120	0.361
121	121	0.118
122	122	0.471
123	123	0.0287
124	124	0.0134
125	125	0.44
126	126	0.651
127	127	0.764
128	128	0.614
129	129	0.58
13	13	0.661
130	130	0.204
131	131	0.0337
132	132	0.227
133	133	0.0312
134	134	0.047
135	135	0.769
136	136	0.00163
137	137	0.0835
138	138	0.984
139	139	0.516
14	14	0.906
140	140	0.983
141	141	0.177
142	142	0.824
143	143	0.154
144	144	0.691
145	145	0.576
146	146	0.372
147	147	0.58
148	148	0.602
149	149	0.322
15	15	0.518
150	150	0.329
151	151	0.125
152	152	0.00658
153	153	0.889
154	154	0.643
155	155	0.0308
156	156	0.346
157	157	0.471
158	158	0.253
159	159	0.979
16	16	0.138
160	160	0.66
161	161	0.84
162	162	0.806
163	163	0.175
164	164	0.287
165	165	0.339
166	166	0.6
167	167	0.527
168	168	0.836
169	169	0.101
17	17	0.742
18	18	0.229
19	19	0.807
2	2	0.256
20	20	0.394
21	21	0.261
22	22	0.196
23	23	0.451
24	24	0.793
25	25	0.552
26	26	0.819
27	27	0.673
28	28	0.974
29	29	0.228
3	3	0.814
30	30	0.0693
31	31	0.842
32	32	0.573
33	33	0.869
34	34	0.17
35	35	0.00155
36	36	0.0744
37	37	0.527
38	38	0.732
39	39	0.368
4	4	0.61
40	40	0.558
41	41	0.457
42	42	0.752
43	43	0.688
44	44	0.811
45	45	0.0511
46	46	0.288
47	47	0.25
48	48	0.782
49	49	0.363
5	5	0.61
50	50	0.5
51	51	0.817
52	52	0.229
53	53	0.242
54	54	0.826
55	55	0.348
56	56	0.49
57	57	0.963
58	58	0.539
59	59	0.902
6	6	0.823
60	60	0.792
61	61	0.874
62	62	0.507
63	63	0.847
64	64	0.955
65	65	0.732
66	66	0.604
67	67	0.708
68	68	0.764
69	69	0.0426
7	7	0.581
70	70	0.404
71	71	0.156
72	72	0.338
73	73	0.0118
74	74	0.0297
75	75	0.309
76	76	0.694
77	77	0.51
78	78	0.409
79	79	0.589
8	8	0.419
80	80	0.25
81	81	0.423
82	82	0.633
83	83	0.539
84	84	0.314
85	85	0.133
86	86	0.516
87	87	0.674
88	88	0.629
89	89	0.418
9	9	0.732
90	90	0.664
91	91	0.813
92	92	0.36
93	93	0.891
94	94	0.141
95	95	0.644
96	96	0.786
97	97	0.225
98	98	0.644
99	99	0.903

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12502

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000010 human amniotic membrane cell- Amnion sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000349 (extraembryonic cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002537 (amnion mesenchymal stem cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000305 (amnion)
0002384 (connective tissue)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0005631 (extraembryonic membrane)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000478 (extraembryonic structure)
0010317 (germ layer / neural crest derived structure)
0000158 (membranous layer)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000092 (human amniotic membrane cell sample)
0000101 (sample by species)
0000001 (sample)
0000010 (human amniotic membrane cell- Amnion sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008429
+|DRA_sample_Accession=CAGE@SAMD00005437
+|accession_numbers=CAGE;DRX008537;DRR009409;DRZ000834;DRZ002219;DRZ012184;DRZ013569
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000305,UBERON:0002384,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0005631,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000478,UBERON:0010317,UBERON:0000158
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000349,CL:0000255,CL:0000034,CL:0002537
@@ Line 8: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr3:111314186..111314204,-!p1@ZBED2!2.42!259.52!ZBED2;;chr19:45971246..45971265,+!p1@FOSB!2.01!1768.14!FOSB;;chr5:153857778..153857794,-!p1@HAND1!1.90!79.26!HAND1;;chr6:19837592..19837621,+!p1@ID4!1.87!424.49!ID4;;chr10:8096772..8096787,+!p2@GATA3!1.87!86.19!GATA3;;chr20:39317868..39317884,-!p1@MAFB!1.81!711.94!MAFB;;chr17:7493405..7493419,-!p1@SOX15!1.77!57.30!SOX15;;chr2:19558373..19558392,-!p1@OSR1!1.74!142.29!OSR1;;chr8:102504651..102504683,+!p1@GRHL2!1.73!52.29!GRHL2;;chr1:209979467..209979494,-!p1@IRF6!1.69!53.72!IRF6;;chr9:110252035..110252057,-!p1@KLF4!1.68!706.92!KLF4;;chr10:8096631..8096660,+!p1@GATA3!1.68!55.87!GATA3;;chr11:65554528..65554546,+!p1@OVOL1!1.68!46.56!OVOL1;;chr20:55204351..55204377,+!p1@TFAP2C!1.61!49.90!TFAP2C;;chr5:2751762..2751784,-!p1@IRX2!1.57!36.05!IRX2;;chr1:38512457..38512474,-!p1@POU3F1!1.56!38.20!POU3F1;;chr1:212782094..212782109,+!p1@ATF3!1.54!865.45!ATF3;;chr3:111314230..111314241,-!p2@ZBED2!1.54!33.90!ZBED2;;chr4:188916918..188916942,+!p1@ZFP42!1.54!33.42!ZFP42;;chr6:53013620..53013644,-!p1@GCM1!1.52!31.75!GCM1;;chr14:75745523..75745537,+!p1@FOS!1.50!3481.85!FOS;;chr8:10588010..10588030,-!p1@SOX7!1.48!29.13!SOX7;;chr3:12330560..12330579,+!p1@PPARG!1.46!31.75!PPARG;;chr1:201979743..201979762,+!p1@ELF3!1.45!26.98!ELF3;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.44!26.26!PEG3;;chr12:52445218..52445237,+!p1@NR4A1!1.41!296.76!NR4A1;;chr13:73633131..73633149,+!p1@KLF5!1.37!232.78!KLF5;;chr13:45010939..45011033,-!p1@TSC22D1!1.36!1389.02!TSC22D1;;chr2:46524897..46524911,+!p2@EPAS1!1.36!60.64!EPAS1;;chr1:201979703..201979721,+!p2@ELF3!1.36!21.73!ELF3;;chr11:65554563..65554576,+!p2@OVOL1!1.36!21.73!OVOL1;;chr17:48072574..48072597,-!p1@DLX3!1.35!21.25!DLX3;;chr8:102504690..102504704,+!p3@GRHL2!1.34!21.01!GRHL2;;chr4:174450089..174450153,-!p2@HAND2!1.34!21.01!HAND2;;chr19:46801639..46801699,+!p1@HIF3A!1.34!20.77!HIF3A;;chr10:8095593..8095625,+!p3@GATA3!1.33!23.64!GATA3;;chr5:2751785..2751808,-!p2@IRX2!1.32!19.82!IRX2;;chr3:32023232..32023273,+!p1@ZNF860!1.30!26.98!ZNF860;;chr2:238600933..238600985,+!p3@LRRFIP1!1.29!98.84!LRRFIP1;;chr7:1577899..1577943,+!p3@MAFK!1.28!17.91!MAFK;;chr6:10415276..10415341,-!p2@TFAP2A!1.27!21.25!TFAP2A;;chr9:110251836..110251887,-!p4@KLF4!1.25!21.96!KLF4;;chr6:85473156..85473210,-!p2@TBX18!1.24!19.82!TBX18;;chr4:174451370..174451387,-!p1@HAND2!1.24!16.23!HAND2;;chr3:128212033..128212051,-!p1@GATA2!1.22!15.52!GATA2;;chr5:153857800..153857812,-!p2@HAND1!1.22!15.52!HAND1;;chr11:2291814..2291825,-!p2@ASCL2!1.21!15.28!ASCL2;;chrY:2803415..2803468,+!p1@ZFY!1.21!15.28!ZFY;;chr6:10412600..10412637,-!p1@TFAP2A!1.18!23.64!TFAP2A;;chr6:85474299..85474324,-!p1@TBX18!1.17!24.59!TBX18;;chr6:10419768..10419819,-!p6@TFAP2A!1.17!13.85!TFAP2A;;chr6:10415484..10415508,-!p3@TFAP2A!1.16!13.61!TFAP2A;;chr1:2461692..2461710,-!p1@HES5!1.16!13.37!HES5;;chr8:102504979..102505010,+!p2@GRHL2!1.15!13.13!GRHL2;;chr16:67881588..67881612,-!p2@CENPT!1.10!16.00!CENPT;;chr1:209979411..209979433,-!p2@IRF6!1.10!11.46!IRF6;;chr17:70117153..70117174,+!p1@SOX9!1.09!115.79!SOX9;;chr3:39195037..39195069,-!p2@CSRNP1!1.09!70.43!CSRNP1;;chr22:21771656..21771662,+!p1@HIC2!1.09!11.22!HIC2;;chr4:38665810..38665827,+!p1@KLF3!1.05!148.98!KLF3;;chr3:128206762..128206781,-!p2@GATA2!1.05!63.74!GATA2;;chrX:107018969..107019024,-!p6@TSC22D3!1.05!14.09!TSC22D3;;chr2:10091815..10091864,+!p1@GRHL1!1.05!13.61!GRHL1;;chr2:238592039..238592054,+!p4@LRRFIP1!1.05!10.27!LRRFIP1;;chr6:12008986..12009016,+!p3@HIVEP1!1.04!31.51!HIVEP1;;chr5:3595934..3595957,+!p2@IRX1!1.03!9.79!IRX1;;chrX:56258844..56258882,+!p1@KLF8!1.01!12.89!KLF8;;chr17:80797886..80797906,-!p1@ZNF750!1.00!9.07!ZNF750;;chr19:45908292..45908374,-!p1@PPP1R13L!0.99!79.50!PPP1R13L;;chr17:38256822..38256851,-!p1@NR1D1!0.99!70.43!NR1D1;;chr2:214015343..214015366,-!p3@IKZF2!0.99!8.83!IKZF2;;chr15:60884706..60884743,-!p1@RORA!0.98!45.84!RORA;;chr17:38256799..38256815,-!p3@NR1D1!0.98!15.76!NR1D1;;chr14:75988771..75988826,+!p1@BATF!0.98!11.46!BATF;;chr2:16080659..16080685,+!p1@MYCN!0.98!8.59!MYCN;;chr7:106809470..106809481,+!p2@HBP1!0.97!11.70!HBP1;;chr9:110250697..110250738,-!p2@KLF4!0.97!9.79!KLF4;;chr2:5832508..5832524,+!p1@SOX11!0.97!8.36!SOX11;;chr10:64576105..64576133,-!p1@EGR2!0.96!17.19!EGR2;;chr11:12696102..12696113,+!p5@TEAD1!0.96!8.12!TEAD1;;chr2:238600998..238601013,+!p5@LRRFIP1!0.96!8.12!LRRFIP1;;chr19:17356189..17356221,-!p2@NR2F6!0.95!13.13!NR2F6;;chr16:67881534..67881549,-!p4@CENPT!0.95!7.88!CENPT;;chr14:75746722..75746777,+!p2@FOS!0.94!10.03!FOS;;chr1:6479968..6479986,-!p1@HES2!0.94!7.64!HES2;;chr6:12012536..12012554,+!p4@HIVEP1!0.93!18.62!HIVEP1;;chr17:7492684..7492778,-!p2@SOX15!0.92!16.00!SOX15;;chr3:71630690..71630750,-!p11@FOXP1!0.92!12.41!FOXP1;;chr16:31076332..31076388,-!p3@ZNF668!0.92!7.40!ZNF668;;chr5:121465234..121465263,+!p1@ZNF474!0.92!7.40!ZNF474;;chr3:170075124..170075136,+!p4@SKIL!0.91!10.03!SKIL;;chr5:121465268..121465281,+!p2@ZNF474!0.91!7.16!ZNF474;;chr6:10419824..10419840,-!p9@TFAP2A!0.91!7.16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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002537;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000158;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000305;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004871
 |ffid_belonging_in_development=CL:0000134
 |fonse_cell_line=
@@ Line 39: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/amniotic%2520membrane%2520cells%252c%2520donor1.CNhs12502.12235-129G3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/amniotic%2520membrane%2520cells%252c%2520donor1.CNhs12502.12235-129G3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/amniotic%2520membrane%2520cells%252c%2520donor1.CNhs12502.12235-129G3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/amniotic%2520membrane%2520cells%252c%2520donor1.CNhs12502.12235-129G3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/amniotic%2520membrane%2520cells%252c%2520donor1.CNhs12502.12235-129G3.hg38.nobarcode.ctss.bed.gz
 |id=FF:12235-129G3
 |is_a=EFO:0002091;;FF:0000010
 |is_obsolete=
-|library_ids=CNhs12502
+|library_id=CNhs12502
+|library_id_phase_based=2:CNhs12502
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12235
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12235
 |name=amniotic membrane cells, donor1
 |namespace=FANTOM5
@@ Line 48: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12502,LSID918,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 }}

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FF:12235-129G3: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:35, 4 June 2020

	FAQ
	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0