FF:10807-111A6: Difference between revisions

Latest revision as of 15:06, 3 June 2020

Name:	teratocarcinoma cell line:PA-1
Species:	Human (Homo sapiens)
Library ID:	CNhs11890
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	ovary
dev stage	NA
sex	female
age	12
cell type	unclassifiable
cell line	PA-1
company	JAPAN HEALTH SCIENCES FOUNDATION - Health Science Research Resources Bank
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005647

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11890		CAGE		DRX008021		DRR008893

Accession ID Hg19

Library id		BAM		CTSS
CNhs11890		DRZ000318		DRZ001703

Accession ID Hg38

Library id		BAM		CTSS
CNhs11890		DRZ011668		DRZ013053

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.16
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.567
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0.0516
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0414
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.031
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.187
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.188
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0235
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0.0977
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.402
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	-0.00769
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.507
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.158
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.177
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0.0977
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11890

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00226
MA0003.1	MA0003.1	0.12
MA0004.1	MA0004.1	0.99
MA0006.1	MA0006.1	0.592
MA0007.1	MA0007.1	0.319
MA0009.1	MA0009.1	0.948
MA0014.1	MA0014.1	0.659
MA0017.1	MA0017.1	0.291
MA0018.2	MA0018.2	0.426
MA0019.1	MA0019.1	0.478
MA0024.1	MA0024.1	2.24369e-7
MA0025.1	MA0025.1	0.975
MA0027.1	MA0027.1	0.637
MA0028.1	MA0028.1	0.104
MA0029.1	MA0029.1	0.506
MA0030.1	MA0030.1	0.076
MA0031.1	MA0031.1	0.177
MA0035.2	MA0035.2	0.348
MA0038.1	MA0038.1	3.1162e-5
MA0039.2	MA0039.2	0.162
MA0040.1	MA0040.1	0.165
MA0041.1	MA0041.1	0.0794
MA0042.1	MA0042.1	0.215
MA0043.1	MA0043.1	0.628
MA0046.1	MA0046.1	0.0953
MA0047.2	MA0047.2	0.11
MA0048.1	MA0048.1	0.0842
MA0050.1	MA0050.1	2.13725e-11
MA0051.1	MA0051.1	1.23834e-8
MA0052.1	MA0052.1	0.00307
MA0055.1	MA0055.1	0.116
MA0057.1	MA0057.1	0.254
MA0058.1	MA0058.1	0.616
MA0059.1	MA0059.1	0.837
MA0060.1	MA0060.1	7.61703e-20
MA0061.1	MA0061.1	9.91376e-4
MA0062.2	MA0062.2	0.954
MA0065.2	MA0065.2	0.769
MA0066.1	MA0066.1	0.427
MA0067.1	MA0067.1	0.151
MA0068.1	MA0068.1	0.00442
MA0069.1	MA0069.1	0.29
MA0070.1	MA0070.1	0.0463
MA0071.1	MA0071.1	0.629
MA0072.1	MA0072.1	0.182
MA0073.1	MA0073.1	0.433
MA0074.1	MA0074.1	0.181
MA0076.1	MA0076.1	0.128
MA0077.1	MA0077.1	0.0245
MA0078.1	MA0078.1	0.427
MA0079.2	MA0079.2	0.175
MA0080.2	MA0080.2	1.15891e-13
MA0081.1	MA0081.1	0.0514
MA0083.1	MA0083.1	0.034
MA0084.1	MA0084.1	0.335
MA0087.1	MA0087.1	0.459
MA0088.1	MA0088.1	0.422
MA0090.1	MA0090.1	0.775
MA0091.1	MA0091.1	0.0528
MA0092.1	MA0092.1	0.266
MA0093.1	MA0093.1	0.927
MA0099.2	MA0099.2	1.16523e-13
MA0100.1	MA0100.1	0.291
MA0101.1	MA0101.1	0.0527
MA0102.2	MA0102.2	2.99949e-5
MA0103.1	MA0103.1	0.426
MA0104.2	MA0104.2	0.918
MA0105.1	MA0105.1	3.97198e-4
MA0106.1	MA0106.1	0.869
MA0107.1	MA0107.1	0.00231
MA0108.2	MA0108.2	0.621
MA0111.1	MA0111.1	0.873
MA0112.2	MA0112.2	2.1683e-5
MA0113.1	MA0113.1	0.11
MA0114.1	MA0114.1	0.954
MA0115.1	MA0115.1	0.14
MA0116.1	MA0116.1	0.00812
MA0117.1	MA0117.1	0.833
MA0119.1	MA0119.1	0.0619
MA0122.1	MA0122.1	0.727
MA0124.1	MA0124.1	0.331
MA0125.1	MA0125.1	0.299
MA0131.1	MA0131.1	0.317
MA0135.1	MA0135.1	0.143
MA0136.1	MA0136.1	2.16169e-12
MA0137.2	MA0137.2	0.0395
MA0138.2	MA0138.2	0.345
MA0139.1	MA0139.1	0.952
MA0140.1	MA0140.1	0.369
MA0141.1	MA0141.1	0.371
MA0142.1	MA0142.1	6.30811e-14
MA0143.1	MA0143.1	6.05812e-6
MA0144.1	MA0144.1	0.0074
MA0145.1	MA0145.1	0.354
MA0146.1	MA0146.1	0.55
MA0147.1	MA0147.1	0.847
MA0148.1	MA0148.1	0.114
MA0149.1	MA0149.1	0.779
MA0150.1	MA0150.1	0.00125
MA0152.1	MA0152.1	0.415
MA0153.1	MA0153.1	0.0191
MA0154.1	MA0154.1	0.00384
MA0155.1	MA0155.1	0.575
MA0156.1	MA0156.1	9.05102e-8
MA0157.1	MA0157.1	0.252
MA0159.1	MA0159.1	0.0319
MA0160.1	MA0160.1	0.295
MA0162.1	MA0162.1	0.348
MA0163.1	MA0163.1	0.00113
MA0164.1	MA0164.1	0.67
MA0258.1	MA0258.1	0.0226
MA0259.1	MA0259.1	0.436

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11890

Novel motif	Logo	P-value
1	1	0.397
10	10	0.288
100	100	0.644
101	101	0.752
102	102	0.671
103	103	0.162
104	104	0.56
105	105	0.256
106	106	0.0209
107	107	0.752
108	108	0.893
109	109	0.166
11	11	0.269
110	110	0.496
111	111	0.827
112	112	0.00405
113	113	0.0748
114	114	0.0693
115	115	0.874
116	116	0.863
117	117	0.306
118	118	0.851
119	119	0.402
12	12	0.625
120	120	0.632
121	121	0.502
122	122	0.427
123	123	0.542
124	124	0.735
125	125	0.337
126	126	0.675
127	127	0.156
128	128	0.324
129	129	0.325
13	13	0.69
130	130	0.151
131	131	0.604
132	132	0.945
133	133	0.0776
134	134	0.475
135	135	0.0255
136	136	0.0294
137	137	0.126
138	138	0.404
139	139	0.04
14	14	0.738
140	140	0.846
141	141	0.696
142	142	0.731
143	143	0.184
144	144	0.814
145	145	0.748
146	146	0.489
147	147	0.288
148	148	0.0128
149	149	0.0226
15	15	0.303
150	150	0.824
151	151	0.11
152	152	0.255
153	153	0.254
154	154	0.927
155	155	0.913
156	156	0.851
157	157	0.826
158	158	0.149
159	159	0.396
16	16	0.292
160	160	0.118
161	161	0.42
162	162	0.382
163	163	0.464
164	164	0.108
165	165	0.297
166	166	0.569
167	167	0.884
168	168	0.466
169	169	0.0464
17	17	0.234
18	18	0.21
19	19	0.259
2	2	0.203
20	20	0.631
21	21	0.915
22	22	0.118
23	23	0.0206
24	24	0.573
25	25	0.355
26	26	0.975
27	27	0.0461
28	28	0.704
29	29	0.536
3	3	0.288
30	30	0.579
31	31	0.506
32	32	0.00963
33	33	0.86
34	34	0.33
35	35	0.431
36	36	0.128
37	37	0.154
38	38	0.296
39	39	0.515
4	4	0.33
40	40	0.302
41	41	0.245
42	42	0.86
43	43	0.157
44	44	0.999
45	45	0.359
46	46	0.185
47	47	0.896
48	48	0.67
49	49	0.293
5	5	0.403
50	50	0.878
51	51	0.634
52	52	0.455
53	53	0.787
54	54	0.552
55	55	0.0604
56	56	0.491
57	57	0.693
58	58	0.123
59	59	0.106
6	6	0.534
60	60	0.112
61	61	0.903
62	62	0.0658
63	63	0.212
64	64	0.586
65	65	0.0647
66	66	0.00561
67	67	0.306
68	68	0.389
69	69	0.709
7	7	0.837
70	70	0.0344
71	71	0.0535
72	72	0.325
73	73	0.098
74	74	0.633
75	75	0.519
76	76	0.576
77	77	0.0886
78	78	0.771
79	79	0.173
8	8	0.452
80	80	0.158
81	81	0.56
82	82	0.0143
83	83	0.916
84	84	0.785
85	85	0.0337
86	86	0.66
87	87	0.227
88	88	0.452
89	89	0.0242
9	9	0.0524
90	90	0.534
91	91	0.153
92	92	0.0158
93	93	0.879
94	94	0.156
95	95	0.445
96	96	0.178
97	97	0.826
98	98	0.647
99	99	0.909

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11890

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100306 teratocarcinoma cell line sample
FF:0101591 PA-1 cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
3095 (germ cell and embryonal cancer)
305 (carcinoma)
2994 (germ cell cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000992 (female gonad)
0000991 (gonad)
0003134 (female reproductive organ)
0005156 (reproductive structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003133 (reproductive organ)
0002323 (body cavity)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0000474 (female reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100977 (ovary cell line sample)
0100306 (teratocarcinoma cell line sample)
0100811 (ovary cancer cell line sample)
0101591 (PA-1 cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0009117 (indifferent gonad)
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0005564 (gonad primordium)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS007914
+|DRA_sample_Accession=CAGE@SAMD00005647
+|accession_numbers=CAGE;DRX008021;DRR008893;DRZ000318;DRZ001703;DRZ011668;DRZ013053
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000992,UBERON:0000991,UBERON:0003134,UBERON:0005156,UBERON:0000466,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0002323,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0003100,UBERON:0000474
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
@@ Line 8: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr3:181429704..181429722,+!p1@SOX2!2.30!200.23!SOX2;;chr20:31350184..31350200,+!p1@DNMT3B!1.95!178.53!DNMT3B;;chrX:136648279..136648295,+!p1@ZIC3!1.91!79.48!ZIC3;;chr8:70983476..70983493,-!p1@PRDM14!1.90!78.60!PRDM14;;chr13:100634031..100634045,+!p1@ZIC2!1.86!71.79!ZIC2;;chr6:31138439..31138475,-!p1@POU5F1!1.85!70.15!POU5F1;;chr6:137815524..137815537,-!p1@OLIG3!1.84!68.76!OLIG3;;chrX:136648643..136648711,+!p2@ZIC3!1.80!62.20!ZIC3;;chr6:10415276..10415341,-!p2@TFAP2A!1.67!55.13!TFAP2A;;chr6:10415484..10415508,-!p3@TFAP2A!1.66!44.41!TFAP2A;;chr3:181429741..181429767,+!p2@SOX2!1.64!42.90!SOX2;;chr14:57272369..57272391,-!p2@OTX2!1.61!39.36!OTX2;;chr1:6304233..6304243,+!p1@HES3!1.57!36.08!HES3;;chr13:100623375..100623425,-!p1@ZIC5!1.52!32.30!ZIC5;;chr2:16080659..16080685,+!p1@MYCN!1.51!31.16!MYCN;;chr20:50418972..50419029,-!p1@SALL4!1.48!29.27!SALL4;;chrX:136648297..136648319,+!p3@ZIC3!1.48!28.89!ZIC3;;chrX:139587228..139587234,-!p1@SOX3!1.46!27.76!SOX3;;chr8:70983443..70983460,-!p2@PRDM14!1.45!27.50!PRDM14;;chr7:96654133..96654150,-!p1@DLX5!1.43!25.74!DLX5;;chr9:127358120..127358170,-!p3@NR6A1!1.40!24.10!NR6A1;;chr2:237077022..237077038,-!p1@GBX2!1.39!23.47!GBX2;;chr13:100634004..100634025,+!p2@ZIC2!1.37!22.33!ZIC2;;chr2:25475120..25475176,-!p2@DNMT3A!1.36!29.40!DNMT3A;;chr12:66218183..66218209,+!p4@HMGA2!1.34!39.49!HMGA2;;chr8:145701192..145701241,-!p1@FOXH1!1.34!20.94!FOXH1;;chr9:127533519..127533573,-!p2@NR6A1!1.33!24.73!NR6A1;;chrX:136648807..136648822,+!p8@ZIC3!1.33!20.57!ZIC3;;chrX:136648753..136648767,+!p5@ZIC3!1.32!19.93!ZIC3;;chr11:63684602..63684664,-!p1@RCOR2!1.30!37.22!RCOR2;;chr8:70983506..70983522,-!p3@PRDM14!1.29!18.67!PRDM14;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.29!18.42!ZBED1;;chr6:10412600..10412637,-!p1@TFAP2A!1.28!29.52!TFAP2A;;chr2:16081912..16081931,+!p2@MYCN!1.28!18.17!MYCN;;chr2:237076992..237077008,-!p2@GBX2!1.28!18.04!GBX2;;chr10:70320074..70320106,+!p1@TET1!1.27!35.20!TET1;;chr20:50419055..50419066,-!p3@SALL4!1.24!16.40!SALL4;;chrX:136648768..136648781,+!p6@ZIC3!1.23!15.90!ZIC3;;chr12:66218255..66218304,+!p3@HMGA2!1.22!41.38!HMGA2;;chr13:100634130..100634143,+!p3@ZIC2!1.21!15.14!ZIC2;;chr20:55204351..55204377,+!p1@TFAP2C!1.19!18.29!TFAP2C;;chr16:51185363..51185381,-!p4@SALL1!1.19!14.51!SALL1;;chr16:51185573..51185593,-!p3@SALL1!1.19!14.38!SALL1;;chr6:19837592..19837621,+!p1@ID4!1.18!85.04!ID4;;chr15:74833584..74833626,+!p1@ARID3B!1.17!31.67!ARID3B;;chr2:223163706..223163730,-!p1@PAX3!1.17!13.75!PAX3;;chr16:3149278..3149305,-!p1@ZSCAN10!1.17!13.63!ZSCAN10;;chr1:164528687..164528711,+!p6@PBX1!1.16!15.52!PBX1;;chr2:16082155..16082169,+!p3@MYCN!1.15!13.12!MYCN;;chr9:114287433..114287513,+!p1@ZNF483!1.13!32.30!ZNF483;;chr13:95364784..95364806,-!p1@SOX21!1.12!12.24!SOX21;;chr14:90085820..90085840,-!p6@FOXN3!1.11!11.86!FOXN3;;chr9:127533582..127533615,-!p1@NR6A1!1.10!17.28!NR6A1;;chr8:86089627..86089653,+!p3@E2F5!1.10!13.25!E2F5;;chr2:25475094..25475112,-!p3@DNMT3A!1.10!11.48!DNMT3A;;chr12:66218836..66218888,+!p1@HMGA2!1.09!106.11!HMGA2;;chr12:66218212..66218244,+!p5@HMGA2!1.09!16.65!HMGA2;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!1.08!106.99!ZNF595;;chrX:136648735..136648747,+!p9@ZIC3!1.08!11.10!ZIC3;;chr5:2751762..2751784,-!p1@IRX2!1.08!11.10!IRX2;;chr12:7941989..7942014,+!p1@NANOG!1.05!10.09!NANOG;;chr12:66218152..66218174,+!p10@HMGA2!1.03!10.47!HMGA2;;chr2:85360499..85360598,+!p1@TCF7L1!1.02!53.62!TCF7L1;;chr14:21994337..21994442,-!p1@SALL2!1.02!26.62!SALL2;;chr13:100638100..100638115,+!p4@ZIC2!1.02!9.59!ZIC2;;chr12:3068544..3068597,+!p1@TEAD4!1.01!56.90!TEAD4;;chr17:41623009..41623053,-!p4@ETV4!1.01!15.01!ETV4;;chr12:66218378..66218401,+!p6@HMGA2!1.00!14.26!HMGA2;;chr20:42295713..42295738,+!p2@MYBL2!0.99!53.49!MYBL2;;chr16:51185318..51185348,-!p2@SALL1!0.98!8.58!SALL1;;chr16:29818199..29818216,+!p11@MAZ!0.97!13.75!MAZ;;chr10:114710098..114710130,+!p2@TCF7L2!0.95!61.06!TCF7L2;;chr9:126774018..126774055,+!p1@LHX2!0.95!7.95!LHX2;;chr13:72441074..72441172,-!p2@DACH1!0.95!7.82!DACH1;;chr5:134369905..134369972,-!p1@PITX1!0.93!11.61!PITX1;;chr6:34204672..34204692,+!p1@HMGA1!0.92!866.64!HMGA1;;chr7:42276822..42276895,-!p2@GLI3!0.92!22.84!GLI3;;chr6:10412392..10412409,-!p4@TFAP2A!0.92!8.45!TFAP2A;;chr8:70983462..70983471,-!p4@PRDM14!0.92!7.32!PRDM14;;chr12:80084303..80084332,-!p1@PAWR!0.91!44.03!PAWR;;chr15:74833547..74833567,+!p2@ARID3B!0.91!10.22!ARID3B;;chr6:10417399..10417415,-!p32@TFAP2A!0.91!7.07!TFAP2A;;chr2:42795745..42795824,+!p1@MTA3!0.90!66.62!MTA3;;chr12:66218420..66218439,+!p12@HMGA2!0.90!6.94!HMGA2;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!0.89!15.27!SOHLH2;;chr12:66218443..66218461,+!p8@HMGA2!0.89!8.71!HMGA2;;chr19:46800289..46800327,+!p2@HIF3A!0.89!6.69!HIF3A;;chr6:10417454..10417460,-!p40@TFAP2A!0.88!6.56!TFAP2A;;chr8:145701166..145701187,-!p2@FOXH1!0.88!6.56!FOXH1;;chr2:88752207..88752218,-!p1@FOXI3!0.88!6.56!FOXI3;;chr20:42295745..42295765,+!p1@MYBL2!0.87!111.91!MYBL2;;chrX:136648554..136648576,+!p4@ZIC3!0.87!6.43!ZIC3;;chr16:54320675..54320715,-!p1@IRX3!0.86!14.13!IRX3;;chr18:56530136..56530199,+!p3@ZNF532!0.86!9.71!ZNF532;;chr7:96635178..96635181,+!p1@DLX6!0.86!6.18!DLX6;;chr12:66218598..66218645,+!p2@HMGA2!0.85!29.65!HMGA2;;chr3:137483141..137483162,+!p1@SOX14!0.85!6.06!SOX14;;chr9:86594530..86594564,-!p@chr9:86594530..86594564,-!0.84!23.72!HNRPK;;chr17:41622765..41622821,-!p2@ETV4!0.84!9.34!ETV4;;chr7:96634878..96634900,+!p2@DLX6!0.84!5.93!DLX6;;chr19:54024251..54024305,+!p4@ZNF331!0.83!9.59!ZNF331;;chr11:6947720..6947812,+!p1@ZNF215!0.83!7.57!ZNF215;;chr12:66218003..66218018,+!p9@HMGA2!0.83!7.19!HMGA2;;chr12:66357214..66357233,+!p13@HMGA2!0.82!5.55!HMGA2;;chr20:50418128..50418147,-!p2@SALL4!0.82!5.55!SALL4;;chr10:70320115..70320126,+!p3@TET1!0.81!5.43!TET1;;chr13:100638124..100638136,+!p7@ZIC2!0.81!5.43!ZIC2;;chr7:96634908..96634923,+!p4@DLX6!0.81!5.43!DLX6;;chr6:15246200..15246214,+!p2@JARID2!0.80!15.77!JARID2;;chr15:42749722..42749739,-!p2@ZFP106!0.80!9.97!ZFP106;;chr17:41622925..41622976,-!p3@ETV4!0.80!8.20!ETV4;;chr16:51185489..51185501,-!p6@SALL1!0.80!5.30!SALL1;;chrX:129402866..129402880,-!p1@ZNF280C!0.79!32.30!ZNF280C;;chr6:15246217..15246228,+!p3@JARID2!0.79!9.59!JARID2;;chr19:58400372..58400411,-!p1@ZNF814!0.78!28.14!ZNF814;;chr1:247171347..247171366,-!p2@ZNF695!0.76!9.21!ZNF695;;chr12:85673977..85674015,+!p1@ALX1!0.76!4.79!ALX1;;chr14:57277178..57277203,-!p1@OTX2!0.76!4.79!OTX2;;chr8:86089417..86089440,+!p2@E2F5!0.75!9.84!E2F5;;chr7:96654026..96654061,-!p2@DLX5!0.75!4.67!DLX5;;chrX:136650899..136650918,+!p7@ZIC3!0.75!4.67!ZIC3;;chr12:50479109..50479146,+!p2@SMARCD1!0.74!84.28!SMARCD1;;chr2:75937794..75937867,-!p2@GCFC2!0.74!10.72!GCFC2;;chr3:40547505..40547545,+!p2@ZNF620!0.74!7.44!ZNF620;;chr14:55493763..55493824,-!p1@WDHD1!0.73!36.46!WDHD1;;chr16:54320646..54320672,-!p2@IRX3!0.73!7.07!IRX3;;chr3:71355163..71355209,-!p5@FOXP1!0.73!6.31!FOXP1;;chr12:80084768..80084821,-!p2@PAWR!0.72!32.55!PAWR;;chr17:41623692..41623715,-!p1@ETV4!0.72!20.19!ETV4;;chr12:80084167..80084197,-!p5@PAWR!0.72!10.85!PAWR;;chr6:15246261..15246312,+!p1@JARID2!0.71!112.92!JARID2;;chr12:80084737..80084763,-!p3@PAWR!0.71!17.16!PAWR;;chr19:58400344..58400364,-!p2@ZNF814!0.71!6.31!ZNF814;;chr18:56531584..56531646,+!p4@ZNF532!0.71!5.68!ZNF532;;chr22:22874610..22874616,-!p1@ZNF280A!0.71!4.16!ZNF280A;;chr3:24536231..24536249,-!p4@THRB!0.71!4.16!THRB;;chr19:23433144..23433204,-!p1@ZNF724P!0.70!20.44!ZNF724P;;chr10:97889464..97889494,+!p3@ZNF518A!0.70!8.07!ZNF518A;;chr3:141747441..141747452,-!p4@TFDP2!0.70!5.80!TFDP2;;chr5:124082580..124082603,-!p4@ZNF608!0.70!4.67!ZNF608;;chr6:10412576..10412599,-!p5@TFAP2A!0.70!4.04!TFAP2A;;chr19:47523058..47523114,+!p1@NPAS1!0.70!4.04!NPAS1;;chr17:46132044..46132080,+!p4@NFE2L1!0.70!4.04!NFE2L1;;chr1:204042233..204042249,+!p1@SOX13!0.69!28.14!SOX13;;chr3:44626446..44626477,+!p1@ZNF660!0.69!7.57!ZNF660;;chr20:35202909..35202963,+!p2@TGIF2,p3@C20orf24!0.69!5.80!TGIF2;;chr15:76629123..76629151,+!p1@ISL2!0.69!4.42!ISL2;;chr2:88752231..88752245,-!p2@FOXI3!0.69!3.91!FOXI3;;chr8:128428066..128428078,+!p1@POU5F1B!0.69!3.91!POU5F1B;;chr5:124082322..124082364,-!p1@ZNF608!0.68!10.60!ZNF608;;chr12:80084279..80084293,-!p8@PAWR!0.68!6.69!PAWR;;chr12:66218469..66218477,+!p16@HMGA2!0.68!3.78!HMGA2;;chr14:29235961..29236008,+!p1@FOXG1!0.68!3.78!FOXG1;;chr3:147111231..147111281,+!p3@ZIC1!0.68!3.78!ZIC1;;chr16:54964899..54964914,+!p2@IRX5!0.68!3.78!IRX5;;chr19:926001..926046,+!p1@ARID3A!0.67!14.26!ARID3A;;chr2:16080635..16080650,+!p4@MYCN!0.67!3.66!MYCN;;chr13:95364761..95364780,-!p2@SOX21!0.67!3.66!SOX21;;chr5:124082470..124082483,-!p8@ZNF608!0.67!3.66!ZNF608;;chr19:21264991..21265026,+!p1@ZNF714!0.66!27.13!ZNF714;;chr12:51566562..51566584,-!p2@TFCP2!0.66!11.35!TFCP2;;chr19:925727..925784,+!p3@ARID3A!0.66!8.33!ARID3A;;chr20:45142154..45142227,-!p1@ZNF334!0.66!7.82!ZNF334;;chr12:66358080..66358094,+!p15@HMGA2!0.66!3.53!HMGA2;;chr6:34204921..34204939,+!p3@HMGA1!0.65!122.51!HMGA1;;chr8:145669791..145669834,-!p1@TONSL!0.65!11.35!TONSL;;chr19:45579725..45579743,-!p1@ZNF296!0.64!17.54!ZNF296;;chr19:21265028..21265052,+!p2@ZNF714!0.64!6.56!ZNF714;;chr6:15245797..15245818,+!p8@JARID2!0.64!4.29!JARID2;;chr5:2751785..2751808,-!p2@IRX2!0.64!3.41!IRX2;;chr19:54024313..54024361,+!p7@ZNF331!0.64!3.41!ZNF331;;chr2:85198231..85198305,+!p1@KCMF1!0.63!50.85!KCMF1;;chr2:239148671..239148686,-!p1@HES6!0.63!13.75!HES6;;chr10:44070016..44070069,-!p1@ZNF239!0.63!11.23!ZNF239;;chr8:86089369..86089408,+!p1@E2F5!0.63!9.97!E2F5;;chr9:126773880..126773895,+!p2@LHX2!0.63!3.28!LHX2;;chr10:126138597..126138612,-!p1@NKX1-2!0.63!3.28!NKX1-2;;chr12:56414795..56414836,+!p4@IKZF4!0.63!3.28!IKZF4;;chr13:100634088..100634099,+!p5@ZIC2!0.63!3.28!ZIC2;;chr12:2986206..2986258,-!p2@FOXM1!0.62!22.33!FOXM1;;chr7:64363638..64363667,+!p1@ZNF273!0.62!18.80!ZNF273;;chr12:57400261..57400344,-!p1@ZBTB39!0.62!17.41!ZBTB39;;chr6:20402102..20402152,+!p1@E2F3!0.62!15.01!E2F3;;chr22:22863052..22863133,-!p1@ZNF280B!0.62!9.46!ZNF280B;;chr15:37390850..37390909,-!p3@MEIS2!0.62!6.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F100!0.19!11.86!ZNF100;;chr2:208394627..208394655,+!p2@CREB1!0.19!11.10!CREB1;;chr19:2841459..2841490,+!p1@ZNF555!0.19!6.81!ZNF555;;chr19:11849700..11849803,-!p1@ZNF823!0.19!6.06!ZNF823;;chr3:44596679..44596726,+!p1@ZNF167!0.19!5.43!ZNF167;;chr19:2944907..2944981,-!p1@ZNF77!0.19!5.17!ZNF77;;chr9:117160738..117160782,-!p2@AKNA!0.19!5.05!AKNA;;chr7:21467674..21467727,+!p1@SP4!0.19!4.79!SP4;;chr3:185826764..185826803,-!p2@ETV5!0.19!4.54!ETV5;;chrX:46404811..46404869,-!p1@ZNF674!0.19!4.42!ZNF674;;chr9:129622904..129622956,+!p1@ZBTB34!0.19!4.16!ZBTB34;;chr22:20748434..20748455,+!p1@ZNF74!0.19!3.66!ZNF74;;chrX:24167548..24167617,+!p2@ZFX!0.19!3.41!ZFX;;chr19:8942962..8942987,-!p1@ZNF558!0.19!3.03!ZNF558;;chr19:52430697..52430749,+!p1@ZNF613!0.19!2.52!ZNF613;;chr19:58326246..58326262,-!p2@ZNF552!0.19!2.52!ZNF552;;chr7:137563945..137564001,-!p6@CREB3L2!0.19!2.52!CREB3L2;;chr1:91487836..91487854,-!p3@ZNF644!0.19!2.40!ZNF644;;chr7:99070527..99070542,+!p2@ZNF789!0.19!2.27!ZNF789;;chr12:56401268..56401305,+!p1@IKZF4!0.19!2.14!IKZF4;;chr16:3285119..3285133,-!p2@ZNF200!0.19!2.02!ZNF200;;chr19:19617430..19617443,+!p9@GATAD2A!0.19!2.02!GATAD2A;;chr8:123793959..123793977,+!p4@ZHX2!0.19!1.89!ZHX2;;chr20:32274150..32274166,-!p2@E2F1!0.19!1.77!E2F1;;chr16:30418894..30418909,+!p2@ZNF771!0.19!1.51!ZNF771;;chr18:47814010..47814021,-!p3@CXXC1!0.19!1.51!CXXC1;;chr8:67525524..67525543,-!p3@MYBL1!0.19!1.51!MYBL1;;chr7:64023410..64023428,-!p2@ZNF680!0.19!1.39!ZNF680;;chr1:164528911..164528940,+!p7@PBX1!0.19!1.26!PBX1;;chr12:53848549..53848582,+!p9@PCBP2!0.19!1.26!PCBP2;;chr18:77867177..77867197,+!p3@ADNP2!0.19!1.26!ADNP2;;chr19:49140595..49140607,-!p3@DBP!0.19!1.14!DBP;;chr20:35201857..35201882,+!p4@TGIF2!0.19!1.14!TGIF2;;chr1:164528297..164528309,+!p9@PBX1!0.19!1.01!PBX1;;chr19:13213704..13213726,-!p3@LYL1!0.19!1.01!LYL1;;chr18:45457558..45457570,-!p9@SMAD2!0.19!0.88!SMAD2;;chr7:14029312..14029325,-!p4@ETV1!0.19!0.88!ETV1;;chr3:141868230..141868250,-!p6@TFDP2!0.19!0.88!TFDP2;;chr11:19262486..19262512,-!p4@E2F8!0.19!0.88!E2F8;;chr12:7077134..7077154,-!p3@PHB2!0.19!0.88!PHB2;;chr18:3447572..3447603,+!p17@TGIF1!0.19!0.76!TGIF1;;chr22:35653468..35653501,+!p1@HMGXB4!0.18!34.19!HMGXB4;;chr17:73780879..73780963,+!p1@UNK!0.18!22.84!UNK;;chr10:38299546..38299686,+!p1@ZNF33A!0.18!19.30!ZNF33A;;chrX:128657457..128657475,-!p1@SMARCA1!0.18!15.39!SMARCA1;;chr19:9695195..9695221,-!p2@ZNF121!0.18!15.14!ZNF121;;chr11:118992269..118992334,+!p1@HINFP!0.18!10.98!HINFP;;chr7:148959269..148959326,+!p1@ZNF783!0.18!10.47!ZNF783;;chr1:44679113..44679152,+!p1@DMAP1!0.18!10.35!DMAP1;;chr13:41240717..41240735,-!p2@FOXO1!0.18!8.71!FOXO1;;chr22:24093267..24093327,-!p1@ZNF70!0.18!8.58!ZNF70;;chr19:50529247..50529296,+!p1@ZNF473!0.18!8.20!ZNF473;;chr10:51572408..51572454,+!p3@NCOA4!0.18!7.32!NCOA4;;chr19:9434841..9434886,+!p1@ZNF559!0.18!6.18!ZNF559;;chr16:3285144..3285191,-!p1@ZNF200!0.18!5.93!ZNF200;;chr18:53257027..53257052,-!p3@TCF4!0.18!4.67!TCF4;;chr19:23869970..23869991,-!p1@ZNF675!0.18!4.42!ZNF675;;chr2:85197924..85197955,+!p3@KCMF1!0.18!4.29!KCMF1;;chr19:44905759..44905797,-!p2@ZFP112,p2@ZNF285!0.18!2.27!ZNF285;;chr8:42698494..42698507,-!p3@THAP1!0.18!1.77!THAP1;;chr18:3451584..3451606,+!p12@TGIF1!0.18!1.51!TGIF1;;chr6:45389835..45389861,+!p7@RUNX2!0.18!1.39!RUNX2;;chr8:60031682..60031710,-!p2@TOX!0.18!1.39!TOX;;chr12:6798731..6798751,-!p4@ZNF384!0.18!1.26!ZNF384;;chr3:71632894..71632909,-!p17@FOXP1!0.18!1.14!FOXP1;;chr6:168227611..168227624,+!p2@MLLT4!0.18!1.14!MLLT4;;chr11:6947647..6947698,+!p2@ZNF215!0.18!1.01!ZNF215;;chr12:19593515..19593573,+!p9@AEBP2!0.18!1.01!AEBP2;;chr12:49413577..49413581,-!p5@MLL2!0.18!1.01!MLL2;;
@@ Line 39: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/teratocarcinoma%2520cell%2520line%253aPA-1.CNhs11890.10807-111A6.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/teratocarcinoma%2520cell%2520line%253aPA-1.CNhs11890.10807-111A6.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/teratocarcinoma%2520cell%2520line%253aPA-1.CNhs11890.10807-111A6.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/teratocarcinoma%2520cell%2520line%253aPA-1.CNhs11890.10807-111A6.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/teratocarcinoma%2520cell%2520line%253aPA-1.CNhs11890.10807-111A6.hg38.nobarcode.ctss.bed.gz
 |id=FF:10807-111A6
 |is_a=EFO:0002091;;FF:0000210;;FF:0100306;;FF:0101591
 |is_obsolete=
-|library_ids=CNhs11890
+|library_id=CNhs11890
+|library_id_phase_based=2:CNhs11890
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10807
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10807
 |name=teratocarcinoma cell line:PA-1
 |namespace=FANTOM5
@@ Line 48: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11890,LSID830,release010,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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@@ Line 87: / Line 100: @@
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 |xref=
-}} {{DRAAccessionNumbers
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10807-111A6;search_select_hide=table117:FF:10807-111A6
-|DRA_sample_Accession=CAGE@DRS007914
-|accession_numbers=DRX008021;DRR008893;DRZ000318;DRZ001703;CAGE
-|library_id=CNhs11890
 }}

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FF:10807-111A6: Difference between revisions

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Latest revision as of 15:06, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0