FF:13317-143A5: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@ | |DRA_sample_Accession=CAGE@SAMD00005327 | ||
|accession_numbers=CAGE;DRX008597;DRR009469;DRZ000894;DRZ002279;DRZ012244;DRZ013629 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0000255,CL:0000235 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0000255,CL:0000235 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|donor= donor2 (150_120:Ud_0h) | |||
|expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!2.71!513.25!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.55!355.14!SPI1;;chr12:54778471..54778528,-!p1@ZNF385A!2.35!221.36!ZNF385A;;chr16:85932760..85932775,+!p1@IRF8!2.34!220.14!IRF8;;chr20:39317868..39317884,-!p1@MAFB!1.96!1010.69!MAFB;;chr7:115670804..115670825,-!p1@TFEC!1.88!75.41!TFEC;;chr11:47279504..47279563,+!p1@NR1H3!1.86!158.11!NR1H3;;chr10:64576105..64576133,-!p1@EGR2!1.85!138.65!EGR2;;chr19:33793430..33793447,-!p1@CEBPA!1.84!276.09!CEBPA;;chr11:47400062..47400077,-!p2@SPI1!1.70!48.65!SPI1;;chr14:75988771..75988826,+!p1@BATF!1.66!59.60!BATF;;chr10:51572408..51572454,+!p3@NCOA4!1.65!240.82!NCOA4;;chr7:50344289..50344323,+!p1@IKZF1!1.54!34.05!IKZF1;;chr7:128577972..128578047,+!p1@IRF5!1.48!45.00!IRF5;;chr3:12330560..12330579,+!p1@PPARG!1.44!30.41!PPARG;;chr7:137620650..137620677,-!p3@CREB3L2!1.44!26.76!CREB3L2;;chr2:68592394..68592405,+!p2@PLEK!1.42!25.54!PLEK;;chr11:47399996..47400014,-!p4@SPI1!1.40!24.32!SPI1;;chr1:78050720..78050734,-!p9@ZZZ3!1.38!23.11!ZZZ3;;chr7:137620684..137620711,-!p4@CREB3L2!1.36!21.89!CREB3L2;;chr11:47399947..47399961,-!p3@SPI1!1.34!20.68!SPI1;;chr12:26277956..26277980,-!p1@BHLHE41!1.28!63.24!BHLHE41;;chr6:41691289..41691312,-!p9@TFEB!1.28!18.24!TFEB;;chr11:47400032..47400043,-!p5@SPI1!1.26!17.03!SPI1;;chr2:145277640..145277771,-!p1@ZEB2!1.25!221.36!ZEB2;;chr16:67198683..67198698,+!p2@HSF4!1.23!15.81!HSF4;;chr11:47400045..47400060,-!p6@SPI1!1.19!14.59!SPI1;;chr7:50343634..50343717,+!p2@IKZF1!1.19!14.59!IKZF1;;chr10:31288398..31288455,-!p2@ZNF438!1.16!15.81!ZNF438;;chr16:67198633..67198671,+!p1@HSF4!1.16!13.38!HSF4;;chr19:13213954..13214021,-!p4@LYL1!1.16!13.38!LYL1;;chr22:38597987..38598021,+!p2@MAFF!1.15!80.27!MAFF;;chr19:50432132..50432217,+!p2@ATF5!1.15!15.81!ATF5;;chr2:145277882..145277967,-!p3@ZEB2!1.14!21.89!ZEB2;;chr1:25256756..25256774,-!p1@RUNX3!1.10!21.89!RUNX3;;chr3:101546827..101546847,+!p2@NFKBIZ!1.09!15.81!NFKBIZ;;chr3:69788576..69788648,+!p1@MITF!1.08!59.60!MITF;;chr6:106534192..106534224,+!p1@PRDM1!1.07!30.41!PRDM1;;chr10:51572339..51572376,+!p4@NCOA4!1.07!24.32!NCOA4;;chr12:26277929..26277955,-!p3@BHLHE41!1.05!14.59!BHLHE41;;chr16:79634624..79634642,-!p1@MAF!1.04!40.14!MAF;;chr12:12764995..12765017,+!p3@CREBL2!1.02!13.38!CREBL2;;chr6:44233252..44233296,-!p1@NFKBIE!0.99!88.79!NFKBIE;;chr17:40440481..40440550,+!p1@STAT5A!0.99!64.46!STAT5A;;chr1:212782094..212782109,+!p1@ATF3!0.98!239.60!ATF3;;chr19:35760698..35760738,+!p8@USF2!0.98!8.51!USF2;;chrY:21906594..21906622,-!p1@KDM5D!0.98!8.51!KDM5D;;chr14:35873947..35873965,-!p1@NFKBIA!0.97!537.58!NFKBIA;;chr19:13213662..13213686,-!p1@LYL1!0.96!12.16!LYL1;;chr5:88178983..88179012,-!p1@MEF2C!0.95!63.24!MEF2C;;chr2:70142232..70142251,+!p1@MXD1!0.95!46.22!MXD1;;chr19:36391434..36391450,-!p1@NFKBID!0.95!15.81!NFKBID;;chr19:35759824..35759891,+!p1@USF2!0.94!249.33!USF2;;chr16:88752861..88752884,-!p2@SNAI3!0.92!7.30!SNAI3;;chr10:31288370..31288393,-!p3@ZNF438!0.92!7.30!ZNF438;;chr14:35872962..35873025,-!p3@NFKBIA!0.90!18.24!NFKBIA;;chr19:49140572..49140594,-!p2@DBP!0.89!10.95!DBP;;chr12:12764947..12764986,+!p2@CREBL2!0.88!13.38!CREBL2;;chr11:47399920..47399931,-!p7@SPI1!0.85!6.08!SPI1;;chr19:54058073..54058088,+!p1@ZNF331!0.85!6.08!ZNF331;;chr14:75988831..75988847,+!p2@BATF!0.85!6.08!BATF;;chr2:113999360..113999386,-!p4@PAX8!0.85!6.08!PAX8;;chr19:45252008..45252024,+!p2@BCL3!0.84!20.68!BCL3;;chr14:62213827..62213853,+!p6@HIF1A!0.84!8.51!HIF1A;;chr3:12329397..12329433,+!p2@PPARG!0.82!13.38!PPARG;;chr14:89628064..89628109,-!p4@FOXN3!0.82!12.16!FOXN3;;chr4:87928105..87928126,+!p13@AFF1!0.81!8.51!AFF1;;chr5:321810..321877,+!p1@AHRR!0.80!18.24!AHRR;;chr19:45504688..45504782,+!p1@RELB!0.79!34.05!RELB;;chr7:149470641..149470694,-!p1@ZNF467!0.79!25.54!ZNF467;;chr8:72756063..72756125,-!p1@MSC!0.79!10.95!MSC;;chr6:106534230..106534254,+!p2@PRDM1!0.78!13.38!PRDM1;;chr3:12329358..12329393,+!p3@PPARG!0.78!13.38!PPARG;;chr4:87968203..87968221,+!p11@AFF1!0.78!8.51!AFF1;;chr7:50344251..50344288,+!p3@IKZF1!0.77!4.86!IKZF1;;chr19:50432104..50432126,+!p6@ATF5!0.77!4.86!ATF5;;chr19:54041669..54041697,+!p2@ZNF331!0.77!4.86!ZNF331;;chr20:3321190..3321215,-!p7@C20orf194!0.77!4.86!C20orf194;;chr10:64575812..64575824,-!p4@EGR2!0.77!4.86!EGR2;;chr12:54778351..54778378,-!p6@ZNF385A!0.77!4.86!ZNF385A;;chr10:3827371..3827386,-!p2@KLF6!0.76!43.78!KLF6;;chr13:27998831..27998851,+!p2@GTF3A!0.76!31.62!GTF3A;;chr19:49140609..49140643,-!p1@DBP!0.76!29.19!DBP;;chr13:41593425..41593480,-!p1@ELF1!0.75!32.84!ELF1;;chrX:131623044..131623089,-!p1@MBNL3!0.74!20.68!MBNL3;;chr12:12764917..12764931,+!p4@CREBL2!0.74!6.08!CREBL2;;chr11:128563948..128564003,+!p1@FLI1!0.73!59.60!FLI1;;chr10:35484804..35484902,+!p2@CREM!0.73!18.24!CREM;;chr16:79634595..79634620,-!p2@MAF!0.73!8.51!MAF;;chr2:208031943..208031978,-!p5@KLF7!0.73!6.08!KLF7;;chr12:26277817..26277863,-!p2@BHLHE41!0.73!6.08!BHLHE41;;chr14:35872494..35872511,-!p5@NFKBIA!0.73!6.08!NFKBIA;;chr18:3448314..3448333,+!p18@TGIF1!0.73!4.86!TGIF1;;chr5:131826457..131826514,-!p1@IRF1!0.72!188.52!IRF1;;chr2:97202480..97202499,+!p1@ARID5A!0.72!48.65!ARID5A;;chr10:104154246..104154347,+!p3@NFKB2!0.72!29.19!NFKB2;;chr11:64764435..64764449,-!p1@BATF2!0.72!6.08!BATF2;;chr19:12902289..12902307,+!p1@JUNB!0.71!1077.59!JUNB;;chr19:926055..926068,+!p2@ARID3A!0.71!9.73!ARID3A;;chr16:79633894..79633954,-!p3@MAF!0.71!8.51!MAF;;chr16:88752889..88752921,-!p1@SNAI3!0.71!4.86!SNAI3;;chr18:51690935..51690957,-!p8@MBD2!0.70!6.08!MBD2;;chr3:5021113..5021180,+!p1@BHLHE40!0.69!312.57!BHLHE40;;chr2:61108695..61108753,+!p1@REL!0.69!30.41!REL;;chr5:76383017..76383068,-!p1@ZBED3!0.69!15.81!ZBED3;;chr13:27998854..27998866,+!p3@GTF3A!0.69!8.51!GTF3A;;chr6:144385698..144385742,-!p2@PLAGL1!0.69!4.86!PLAGL1;;chr18:77160282..77160343,+!p2@NFATC1!0.68!26.76!NFATC1;;chr9:137217986..137218049,+!p3@RXRA!0.68!12.16!RXRA;;chr12:54785074..54785122,-!p2@ZNF385A!0.67!6.08!ZNF385A;;chr17:40440225..40440268,+!p3@STAT5A!0.67!4.86!STAT5A;;chr1:8484007..8484061,-!p13@RERE!0.67!4.86!RERE;;chr20:48808672..48808680,+!p26@CEBPB!0.67!3.65!CEBPB;;chr11:47279568..47279577,+!p8@NR1H3!0.67!3.65!NR1H3;;chr11:64764402..64764413,-!p2@BATF2!0.67!3.65!BATF2;;chr12:26277798..26277809,-!p5@BHLHE41!0.67!3.65!BHLHE41;;chr12:54778444..54778451,-!p8@ZNF385A!0.67!3.65!ZNF385A;;chr14:35872542..35872553,-!p10@NFKBIA!0.67!3.65!NFKBIA;;chrY:2803415..2803468,+!p1@ZFY!0.67!3.65!ZFY;;chr5:71803177..71803255,-!p1@ZNF366!0.67!3.65!ZNF366;;chr8:102216978..102217003,-!p4@ZNF706!0.67!3.65!ZNF706;;chr16:85942631..85942635,+!p5@IRF8!0.67!3.65!IRF8;;chr17:40440446..40440464,+!p5@STAT5A!0.67!3.65!STAT5A;;chr18:52988979..52988993,-!p18@TCF4!0.67!3.65!TCF4;;chr2:113994526..113994556,-!p3@PAX8!0.67!3.65!PAX8;;chr2:145147356..145147376,-!p24@ZEB2!0.67!3.65!ZEB2;;chr2:145277589..145277612,-!p12@ZEB2!0.67!3.65!ZEB2;;chr2:238600998..238601013,+!p5@LRRFIP1!0.67!3.65!LRRFIP1;;chr1:158979686..158979745,+!p1@IFI16!0.66!137.43!IFI16;;chr4:185395633..185395651,-!p2@IRF2!0.66!6.08!IRF2;;chr1:221052733..221052749,+!p2@HLX!0.66!4.86!HLX;;chr16:31885093..31885165,+!p1@ZNF267!0.65!62.03!ZNF267;;chr1:156470515..156470542,-!p2@MEF2D!0.65!20.68!MEF2D;;chr9:102584262..102584276,+!p1@NR4A3!0.65!8.51!NR4A3;;chr20:48807456..48807475,+!p3@CEBPB!0.65!7.30!CEBPB;;chr20:48809000..48809053,+!p12@CEBPB!0.65!4.86!CEBPB;;chr4:87968291..87968314,+!p14@AFF1!0.65!4.86!AFF1;;chr8:116681150..116681164,-!p5@TRPS1!0.64!7.30!TRPS1;;chr6:41703296..41703367,-!p1@TFEB!0.63!19.46!TFEB;;chr16:68119324..68119364,+!p1@NFATC3!0.63!17.03!NFATC3;;chr1:28995231..28995250,+!p2@GMEB1!0.63!7.30!GMEB1;;chr2:28618532..28618610,+!p4@FOSL2!0.63!6.08!FOSL2;;chr9:102584159..102584174,+!p2@NR4A3!0.61!6.08!NR4A3;;chr20:48807351..48807384,+!p1@CEBPB!0.60!369.74!CEBPB;;chr14:68283291..68283323,-!p1@ZFYVE26!0.60!59.60!ZFYVE26;;chrX:129244454..129244488,-!p1@ELF4!0.60!25.54!ELF4;;chr19:45579725..45579743,-!p1@ZNF296!0.60!15.81!ZNF296;;chr19:56111680..56111716,+!p1@ZNF524!0.60!13.38!ZNF524;;chr10:94449703..94449718,+!p1@HHEX!0.60!13.38!HHEX;;chr1:45805693..45805718,+!p3@TOE1!0.60!7.30!TOE1;;chr1:156470323..156470332,-!p4@MEF2D!0.60!4.86!MEF2D;;chr1:158985493..158985535,+!p4@IFI16!0.60!4.86!IFI16;;chr2:145282041..145282092,-!p8@ZEB2!0.60!4.86!ZEB2;;chr1:158985469..158985489,+!p7@IFI16!0.60!3.65!IFI16;;chr14:62162258..62162269,+!p2@HIF1A!0.59!34.05!HIF1A;;chr19:58694421..58694485,+!p1@ZNF274!0.59!18.24!ZNF274;;chr19:35759976..35760042,+!p4@USF2!0.59!18.24!USF2;;chr2:70167296..70167306,+!p3@MXD1!0.59!4.86!MXD1;;chr4:103422499..103422632,+!p1@NFKB1!0.58!71.76!NFKB1;;chr1:158979792..158979814,+!p2@IFI16!0.58!32.84!IFI16;;chr4:87928328..87928351,+!p6@AFF1!0.58!8.51!AFF1;;chr2:113993052..113993097,-!p2@PAX8!0.58!7.30!PAX8;;chr5:88179195..88179224,-!p3@MEF2C!0.58!4.86!MEF2C;;chr10:104155659..104155676,+!p4@NFKB2!0.58!3.65!NFKB2;;chr4:106155658..106155662,+!p5@TET2!0.58!3.65!TET2;;chr6:20403916..20403965,+!p3@E2F3!0.57!14.59!E2F3;;chr19:926001..926046,+!p1@ARID3A!0.56!10.95!ARID3A;;chr3:48282536..48282586,+!p2@ZNF589!0.56!8.51!ZNF589;;chr19:20011731..20011743,+!p3@ZNF93!0.56!3.65!ZNF93;;chr19:20011744..20011770,+!p1@ZNF93!0.55!12.16!ZNF93;;chr14:35872453..35872485,-!p2@NFKBIA!0.55!7.30!NFKBIA;;chr1:44679370..44679422,+!p3@DMAP1!0.55!3.65!DMAP1;;chr16:31085961..31086009,+!p2@ZNF646!0.55!3.65!ZNF646;;chr19:13213704..13213726,-!p3@LYL1!0.55!3.65!LYL1;;chr2:8822176..8822196,+!p1@ID2!0.54!447.58!ID2;;chr8:48650715..48650735,-!p1@CEBPD!0.54!403.79!CEBPD;;chr14:74226747..74226779,-!p3@C14orf43!0.54!17.03!C14orf43;;chr14:74226833..74226845,-!p7@C14orf43!0.54!3.65!C14orf43;;chr16:73093174..73093209,-!p3@ZFHX3!0.54!3.65!ZFHX3;;chr15:57211318..57211355,+!p10@TCF12!0.54!2.43!TCF12;;chr17:7382810..7382822,-!p12@ZBTB4!0.54!2.43!ZBTB4;;chr18:6414835..6414847,-!p5@L3MBTL4!0.54!2.43!L3MBTL4;;chr19:13213399..13213414,-!p6@LYL1!0.54!2.43!LYL1;;chr19:35760750..35760764,+!p16@USF2!0.54!2.43!USF2;;chr19:36389729..36389751,-!p3@NFKBID!0.54!2.43!NFKBID;;chr6:106535598..106535637,+!p7@PRDM1!0.54!2.43!PRDM1;;chr6:106535643..106535655,+!p13@PRDM1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| |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!2.71!513.25!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.55!355.14!SPI1;;chr12:54778471..54778528,-!p1@ZNF385A!2.35!221.36!ZNF385A;;chr16:85932760..85932775,+!p1@IRF8!2.34!220.14!IRF8;;chr20:39317868..39317884,-!p1@MAFB!1.96!1010.69!MAFB;;chr7:115670804..115670825,-!p1@TFEC!1.88!75.41!TFEC;;chr11:47279504..47279563,+!p1@NR1H3!1.86!158.11!NR1H3;;chr10:64576105..64576133,-!p1@EGR2!1.85!138.65!EGR2;;chr19:33793430..33793447,-!p1@CEBPA!1.84!276.09!CEBPA;;chr11:47400062..47400077,-!p2@SPI1!1.70!48.65!SPI1;;chr14:75988771..75988826,+!p1@BATF!1.66!59.60!BATF;;chr10:51572408..51572454,+!p3@NCOA4!1.65!240.82!NCOA4;;chr7:50344289..50344323,+!p1@IKZF1!1.54!34.05!IKZF1;;chr7:128577972..128578047,+!p1@IRF5!1.48!45.00!IRF5;;chr3:12330560..12330579,+!p1@PPARG!1.44!30.41!PPARG;;chr7:137620650..137620677,-!p3@CREB3L2!1.44!26.76!CREB3L2;;chr2:68592394..68592405,+!p2@PLEK!1.42!25.54!PLEK;;chr11:47399996..47400014,-!p4@SPI1!1.40!24.32!SPI1;;chr1:78050720..78050734,-!p9@ZZZ3!1.38!23.11!ZZZ3;;chr7:137620684..137620711,-!p4@CREB3L2!1.36!21.89!CREB3L2;;chr11:47399947..47399961,-!p3@SPI1!1.34!20.68!SPI1;;chr12:26277956..26277980,-!p1@BHLHE41!1.28!63.24!BHLHE41;;chr6:41691289..41691312,-!p9@TFEB!1.28!18.24!TFEB;;chr11:47400032..47400043,-!p5@SPI1!1.26!17.03!SPI1;;chr2:145277640..145277771,-!p1@ZEB2!1.25!221.36!ZEB2;;chr16:67198683..67198698,+!p2@HSF4!1.23!15.81!HSF4;;chr11:47400045..47400060,-!p6@SPI1!1.19!14.59!SPI1;;chr7:50343634..50343717,+!p2@IKZF1!1.19!14.59!IKZF1;;chr10:31288398..31288455,-!p2@ZNF438!1.16!15.81!ZNF438;;chr16:67198633..67198671,+!p1@HSF4!1.16!13.38!HSF4;;chr19:13213954..13214021,-!p4@LYL1!1.16!13.38!LYL1;;chr22:38597987..38598021,+!p2@MAFF!1.15!80.27!MAFF;;chr19:50432132..50432217,+!p2@ATF5!1.15!15.81!ATF5;;chr2:145277882..145277967,-!p3@ZEB2!1.14!21.89!ZEB2;;chr1:25256756..25256774,-!p1@RUNX3!1.10!21.89!RUNX3;;chr3:101546827..101546847,+!p2@NFKBIZ!1.09!15.81!NFKBIZ;;chr3:69788576..69788648,+!p1@MITF!1.08!59.60!MITF;;chr6:106534192..106534224,+!p1@PRDM1!1.07!30.41!PRDM1;;chr10:51572339..51572376,+!p4@NCOA4!1.07!24.32!NCOA4;;chr12:26277929..26277955,-!p3@BHLHE41!1.05!14.59!BHLHE41;;chr16:79634624..79634642,-!p1@MAF!1.04!40.14!MAF;;chr12:12764995..12765017,+!p3@CREBL2!1.02!13.38!CREBL2;;chr6:44233252..44233296,-!p1@NFKBIE!0.99!88.79!NFKBIE;;chr17:40440481..40440550,+!p1@STAT5A!0.99!64.46!STAT5A;;chr1:212782094..212782109,+!p1@ATF3!0.98!239.60!ATF3;;chr19:35760698..35760738,+!p8@USF2!0.98!8.51!USF2;;chrY:21906594..21906622,-!p1@KDM5D!0.98!8.51!KDM5D;;chr14:35873947..35873965,-!p1@NFKBIA!0.97!537.58!NFKBIA;;chr19:13213662..13213686,-!p1@LYL1!0.96!12.16!LYL1;;chr5:88178983..88179012,-!p1@MEF2C!0.95!63.24!MEF2C;;chr2:70142232..70142251,+!p1@MXD1!0.95!46.22!MXD1;;chr19:36391434..36391450,-!p1@NFKBID!0.95!15.81!NFKBID;;chr19:35759824..35759891,+!p1@USF2!0.94!249.33!USF2;;chr16:88752861..88752884,-!p2@SNAI3!0.92!7.30!SNAI3;;chr10:31288370..31288393,-!p3@ZNF438!0.92!7.30!ZNF438;;chr14:35872962..35873025,-!p3@NFKBIA!0.90!18.24!NFKBIA;;chr19:49140572..49140594,-!p2@DBP!0.89!10.95!DBP;;chr12:12764947..12764986,+!p2@CREBL2!0.88!13.38!CREBL2;;chr11:47399920..47399931,-!p7@SPI1!0.85!6.08!SPI1;;chr19:54058073..54058088,+!p1@ZNF331!0.85!6.08!ZNF331;;chr14:75988831..75988847,+!p2@BATF!0.85!6.08!BATF;;chr2:113999360..113999386,-!p4@PAX8!0.85!6.08!PAX8;;chr19:45252008..45252024,+!p2@BCL3!0.84!20.68!BCL3;;chr14:62213827..62213853,+!p6@HIF1A!0.84!8.51!HIF1A;;chr3:12329397..12329433,+!p2@PPARG!0.82!13.38!PPARG;;chr14:89628064..89628109,-!p4@FOXN3!0.82!12.16!FOXN3;;chr4:87928105..87928126,+!p13@AFF1!0.81!8.51!AFF1;;chr5:321810..321877,+!p1@AHRR!0.80!18.24!AHRR;;chr19:45504688..45504782,+!p1@RELB!0.79!34.05!RELB;;chr7:149470641..149470694,-!p1@ZNF467!0.79!25.54!ZNF467;;chr8:72756063..72756125,-!p1@MSC!0.79!10.95!MSC;;chr6:106534230..106534254,+!p2@PRDM1!0.78!13.38!PRDM1;;chr3:12329358..12329393,+!p3@PPARG!0.78!13.38!PPARG;;chr4:87968203..87968221,+!p11@AFF1!0.78!8.51!AFF1;;chr7:50344251..50344288,+!p3@IKZF1!0.77!4.86!IKZF1;;chr19:50432104..50432126,+!p6@ATF5!0.77!4.86!ATF5;;chr19:54041669..54041697,+!p2@ZNF331!0.77!4.86!ZNF331;;chr20:3321190..3321215,-!p7@C20orf194!0.77!4.86!C20orf194;;chr10:64575812..64575824,-!p4@EGR2!0.77!4.86!EGR2;;chr12:54778351..54778378,-!p6@ZNF385A!0.77!4.86!ZNF385A;;chr10:3827371..3827386,-!p2@KLF6!0.76!43.78!KLF6;;chr13:27998831..27998851,+!p2@GTF3A!0.76!31.62!GTF3A;;chr19:49140609..49140643,-!p1@DBP!0.76!29.19!DBP;;chr13:41593425..41593480,-!p1@ELF1!0.75!32.84!ELF1;;chrX:131623044..131623089,-!p1@MBNL3!0.74!20.68!MBNL3;;chr12:12764917..12764931,+!p4@CREBL2!0.74!6.08!CREBL2;;chr11:128563948..128564003,+!p1@FLI1!0.73!59.60!FLI1;;chr10:35484804..35484902,+!p2@CREM!0.73!18.24!CREM;;chr16:79634595..79634620,-!p2@MAF!0.73!8.51!MAF;;chr2:208031943..208031978,-!p5@KLF7!0.73!6.08!KLF7;;chr12:26277817..26277863,-!p2@BHLHE41!0.73!6.08!BHLHE41;;chr14:35872494..35872511,-!p5@NFKBIA!0.73!6.08!NFKBIA;;chr18:3448314..3448333,+!p18@TGIF1!0.73!4.86!TGIF1;;chr5:131826457..131826514,-!p1@IRF1!0.72!188.52!IRF1;;chr2:97202480..97202499,+!p1@ARID5A!0.72!48.65!ARID5A;;chr10:104154246..104154347,+!p3@NFKB2!0.72!29.19!NFKB2;;chr11:64764435..64764449,-!p1@BATF2!0.72!6.08!BATF2;;chr19:12902289..12902307,+!p1@JUNB!0.71!1077.59!JUNB;;chr19:926055..926068,+!p2@ARID3A!0.71!9.73!ARID3A;;chr16:79633894..79633954,-!p3@MAF!0.71!8.51!MAF;;chr16:88752889..88752921,-!p1@SNAI3!0.71!4.86!SNAI3;;chr18:51690935..51690957,-!p8@MBD2!0.70!6.08!MBD2;;chr3:5021113..5021180,+!p1@BHLHE40!0.69!312.57!BHLHE40;;chr2:61108695..61108753,+!p1@REL!0.69!30.41!REL;;chr5:76383017..76383068,-!p1@ZBED3!0.69!15.81!ZBED3;;chr13:27998854..27998866,+!p3@GTF3A!0.69!8.51!GTF3A;;chr6:144385698..144385742,-!p2@PLAGL1!0.69!4.86!PLAGL1;;chr18:77160282..77160343,+!p2@NFATC1!0.68!26.76!NFATC1;;chr9:137217986..137218049,+!p3@RXRA!0.68!12.16!RXRA;;chr12:54785074..54785122,-!p2@ZNF385A!0.67!6.08!ZNF385A;;chr17:40440225..40440268,+!p3@STAT5A!0.67!4.86!STAT5A;;chr1:8484007..8484061,-!p13@RERE!0.67!4.86!RERE;;chr20:48808672..48808680,+!p26@CEBPB!0.67!3.65!CEBPB;;chr11:47279568..47279577,+!p8@NR1H3!0.67!3.65!NR1H3;;chr11:64764402..64764413,-!p2@BATF2!0.67!3.65!BATF2;;chr12:26277798..26277809,-!p5@BHLHE41!0.67!3.65!BHLHE41;;chr12:54778444..54778451,-!p8@ZNF385A!0.67!3.65!ZNF385A;;chr14:35872542..35872553,-!p10@NFKBIA!0.67!3.65!NFKBIA;;chrY:2803415..2803468,+!p1@ZFY!0.67!3.65!ZFY;;chr5:71803177..71803255,-!p1@ZNF366!0.67!3.65!ZNF366;;chr8:102216978..102217003,-!p4@ZNF706!0.67!3.65!ZNF706;;chr16:85942631..85942635,+!p5@IRF8!0.67!3.65!IRF8;;chr17:40440446..40440464,+!p5@STAT5A!0.67!3.65!STAT5A;;chr18:52988979..52988993,-!p18@TCF4!0.67!3.65!TCF4;;chr2:113994526..113994556,-!p3@PAX8!0.67!3.65!PAX8;;chr2:145147356..145147376,-!p24@ZEB2!0.67!3.65!ZEB2;;chr2:145277589..145277612,-!p12@ZEB2!0.67!3.65!ZEB2;;chr2:238600998..238601013,+!p5@LRRFIP1!0.67!3.65!LRRFIP1;;chr1:158979686..158979745,+!p1@IFI16!0.66!137.43!IFI16;;chr4:185395633..185395651,-!p2@IRF2!0.66!6.08!IRF2;;chr1:221052733..221052749,+!p2@HLX!0.66!4.86!HLX;;chr16:31885093..31885165,+!p1@ZNF267!0.65!62.03!ZNF267;;chr1:156470515..156470542,-!p2@MEF2D!0.65!20.68!MEF2D;;chr9:102584262..102584276,+!p1@NR4A3!0.65!8.51!NR4A3;;chr20:48807456..48807475,+!p3@CEBPB!0.65!7.30!CEBPB;;chr20:48809000..48809053,+!p12@CEBPB!0.65!4.86!CEBPB;;chr4:87968291..87968314,+!p14@AFF1!0.65!4.86!AFF1;;chr8:116681150..116681164,-!p5@TRPS1!0.64!7.30!TRPS1;;chr6:41703296..41703367,-!p1@TFEB!0.63!19.46!TFEB;;chr16:68119324..68119364,+!p1@NFATC3!0.63!17.03!NFATC3;;chr1:28995231..28995250,+!p2@GMEB1!0.63!7.30!GMEB1;;chr2:28618532..28618610,+!p4@FOSL2!0.63!6.08!FOSL2;;chr9:102584159..102584174,+!p2@NR4A3!0.61!6.08!NR4A3;;chr20:48807351..48807384,+!p1@CEBPB!0.60!369.74!CEBPB;;chr14:68283291..68283323,-!p1@ZFYVE26!0.60!59.60!ZFYVE26;;chrX:129244454..129244488,-!p1@ELF4!0.60!25.54!ELF4;;chr19:45579725..45579743,-!p1@ZNF296!0.60!15.81!ZNF296;;chr19:56111680..56111716,+!p1@ZNF524!0.60!13.38!ZNF524;;chr10:94449703..94449718,+!p1@HHEX!0.60!13.38!HHEX;;chr1:45805693..45805718,+!p3@TOE1!0.60!7.30!TOE1;;chr1:156470323..156470332,-!p4@MEF2D!0.60!4.86!MEF2D;;chr1:158985493..158985535,+!p4@IFI16!0.60!4.86!IFI16;;chr2:145282041..145282092,-!p8@ZEB2!0.60!4.86!ZEB2;;chr1:158985469..158985489,+!p7@IFI16!0.60!3.65!IFI16;;chr14:62162258..62162269,+!p2@HIF1A!0.59!34.05!HIF1A;;chr19:58694421..58694485,+!p1@ZNF274!0.59!18.24!ZNF274;;chr19:35759976..35760042,+!p4@USF2!0.59!18.24!USF2;;chr2:70167296..70167306,+!p3@MXD1!0.59!4.86!MXD1;;chr4:103422499..103422632,+!p1@NFKB1!0.58!71.76!NFKB1;;chr1:158979792..158979814,+!p2@IFI16!0.58!32.84!IFI16;;chr4:87928328..87928351,+!p6@AFF1!0.58!8.51!AFF1;;chr2:113993052..113993097,-!p2@PAX8!0.58!7.30!PAX8;;chr5:88179195..88179224,-!p3@MEF2C!0.58!4.86!MEF2C;;chr10:104155659..104155676,+!p4@NFKB2!0.58!3.65!NFKB2;;chr4:106155658..106155662,+!p5@TET2!0.58!3.65!TET2;;chr6:20403916..20403965,+!p3@E2F3!0.57!14.59!E2F3;;chr19:926001..926046,+!p1@ARID3A!0.56!10.95!ARID3A;;chr3:48282536..48282586,+!p2@ZNF589!0.56!8.51!ZNF589;;chr19:20011731..20011743,+!p3@ZNF93!0.56!3.65!ZNF93;;chr19:20011744..20011770,+!p1@ZNF93!0.55!12.16!ZNF93;;chr14:35872453..35872485,-!p2@NFKBIA!0.55!7.30!NFKBIA;;chr1:44679370..44679422,+!p3@DMAP1!0.55!3.65!DMAP1;;chr16:31085961..31086009,+!p2@ZNF646!0.55!3.65!ZNF646;;chr19:13213704..13213726,-!p3@LYL1!0.55!3.65!LYL1;;chr2:8822176..8822196,+!p1@ID2!0.54!447.58!ID2;;chr8:48650715..48650735,-!p1@CEBPD!0.54!403.79!CEBPD;;chr14:74226747..74226779,-!p3@C14orf43!0.54!17.03!C14orf43;;chr14:74226833..74226845,-!p7@C14orf43!0.54!3.65!C14orf43;;chr16:73093174..73093209,-!p3@ZFHX3!0.54!3.65!ZFHX3;;chr15:57211318..57211355,+!p10@TCF12!0.54!2.43!TCF12;;chr17:7382810..7382822,-!p12@ZBTB4!0.54!2.43!ZBTB4;;chr18:6414835..6414847,-!p5@L3MBTL4!0.54!2.43!L3MBTL4;;chr19:13213399..13213414,-!p6@LYL1!0.54!2.43!LYL1;;chr19:35760750..35760764,+!p16@USF2!0.54!2.43!USF2;;chr19:36389729..36389751,-!p3@NFKBID!0.54!2.43!NFKBID;;chr6:106535598..106535637,+!p7@PRDM1!0.54!2.43!PRDM1;;chr6:106535643..106535655,+!p13@PRDM1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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000235;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405 | |||
|ffid_belonging_in_development=CL:0000049,CL:0000134 | |ffid_belonging_in_development=CL:0000049,CL:0000134 | ||
|fonse_cell_line= | |fonse_cell_line= | ||
Line 39: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Monocyte-derived%2520macrophages%2520response%2520to%2520udorn%2520influenza%2520infection%252c%252000hr00min%252c%2520donor2%2520%2528150_120%253aUd_0h%2529.CNhs13646.13317-143A5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Monocyte-derived%2520macrophages%2520response%2520to%2520udorn%2520influenza%2520infection%252c%252000hr00min%252c%2520donor2%2520%2528150_120%253aUd_0h%2529.CNhs13646.13317-143A5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Monocyte-derived%2520macrophages%2520response%2520to%2520udorn%2520influenza%2520infection%252c%252000hr00min%252c%2520donor2%2520%2528150_120%253aUd_0h%2529.CNhs13646.13317-143A5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/Monocyte-derived%2520macrophages%2520response%2520to%2520udorn%2520influenza%2520infection%252c%252000hr00min%252c%2520donor2%2520%2528150_120%253aUd_0h%2529.CNhs13646.13317-143A5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/Monocyte-derived%2520macrophages%2520response%2520to%2520udorn%2520influenza%2520infection%252c%252000hr00min%252c%2520donor2%2520%2528150_120%253aUd_0h%2529.CNhs13646.13317-143A5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:13317-143A5 | |id=FF:13317-143A5 | ||
|is_a=EFO:0002091;;FF:0011215 | |is_a=EFO:0002091;;FF:0011215 | ||
|is_obsolete= | |is_obsolete= | ||
| | |library_id=CNhs13646 | ||
|name=Monocyte-derived macrophages response to udorn influenza infection | |library_id_phase_based=2:CNhs13646 | ||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;13317 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;13317 | |||
|name=Monocyte-derived macrophages response to udorn influenza infection | |||
|namespace= | |namespace= | ||
|part_of= | |part_of= | ||
Line 50: | Line 64: | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq= | |profile_srnaseq= | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| ||
Line 85: | Line 100: | ||
|sample_strain= | |sample_strain= | ||
|sample_tissue=blood | |sample_tissue=blood | ||
|time= 00hr00min | |||
|timecourse=Macrophage_influenza_infection | |||
|top_motifs=SREBF1,2:2.85139889757;EN1,2:1.85365628891;RXRA_VDR{dimer}:1.80966439535;NR6A1:1.66662867324;ESRRA:1.51251476718;PAX8:1.39783315289;IRF7:1.33729727182;ESR1:1.27417370157;IRF1,2:1.20747216549;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.20117813585;SPIB:1.18520637076;NFIL3:1.18401943264;NANOG{mouse}:1.16726055228;TFCP2:1.10905832843;DMAP1_NCOR{1,2}_SMARC:1.06544407211;SPI1:1.04060257043;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.988391522776;FOXD3:0.935031988998;HMX1:0.791770761265;LHX3,4:0.779965990423;NFE2L1:0.762552394322;RXR{A,B,G}:0.758542190411;NKX2-2,8:0.743786753881;IKZF2:0.743642366401;EBF1:0.741349315581;GLI1..3:0.730551525833;HNF4A_NR2F1,2:0.677514840754;NFE2L2:0.637718796571;HLF:0.623981625924;NFKB1_REL_RELA:0.616028718282;ETS1,2:0.604597396181;FOXP3:0.562160908955;HAND1,2:0.556538706813;POU5F1:0.551298210138;MYOD1:0.538803605229;PAX1,9:0.528651617136;TLX2:0.510314786881;OCT4_SOX2{dimer}:0.492204185016;EP300:0.464670733604;PPARG:0.462445669689;NKX6-1,2:0.424629858991;SMAD1..7,9:0.404825097592;CEBPA,B_DDIT3:0.375051525231;HES1:0.372934619258;RORA:0.356876459263;STAT2,4,6:0.346466923095;ARID5B:0.303285726772;RUNX1..3:0.299523116515;PAX2:0.29124357275;SPZ1:0.267180667995;NKX3-2:0.214213955428;TBP:0.213528064862;MAFB:0.142341882055;IKZF1:0.139495438478;CDX1,2,4:0.109787941942;MTF1:0.0928545122845;ELF1,2,4:0.0663078786501;ALX4:0.0603325774862;VSX1,2:0.0354622519657;NFE2:0.0304379679336;FOSL2:0.0294982610737;TGIF1:-0.00930457922819;NFIX:-0.0133634491052;KLF4:-0.0152592164011;NR5A1,2:-0.0363014444675;FOX{F1,F2,J1}:-0.0387214578461;PRDM1:-0.0409043552836;PAX6:-0.0443688688057;ATF4:-0.050444339884;MYFfamily:-0.0554909113355;bHLH_family:-0.0648289447021;NHLH1,2:-0.0693294725137;GATA4:-0.0969060229328;ZEB1:-0.100382237085;TFAP4:-0.10124135496;NKX2-3_NKX2-5:-0.101659555971;ZBTB16:-0.102011678122;REST:-0.107775419545;UFEwm:-0.111452360327;FOS_FOS{B,L1}_JUN{B,D}:-0.128328647056;PRRX1,2:-0.149818253554;TAL1_TCF{3,4,12}:-0.155489029306;RFX2..5_RFXANK_RFXAP:-0.166775959297;HMGA1,2:-0.175603627004;GATA6:-0.178650087258;FOXO1,3,4:-0.211909518949;PAX4:-0.249678828127;BACH2:-0.280383276964;HOXA9_MEIS1:-0.291912394257;CRX:-0.293714141655;FOXA2:-0.306521839364;NR3C1:-0.321242274619;HOX{A5,B5}:-0.330484670702;GZF1:-0.354757537875;SRF:-0.381842765829;ATF5_CREB3:-0.397550932109;SOX5:-0.431131890503;LMO2:-0.459558961306;CUX2:-0.501223508545;ATF2:-0.522331964018;FOXN1:-0.525262606596;ZNF238:-0.559005798259;T:-0.560638517252;ONECUT1,2:-0.564938875821;AR:-0.571987613146;HNF1A:-0.578560903652;FOX{D1,D2}:-0.582405711042;MEF2{A,B,C,D}:-0.609208236752;ZNF148:-0.633267497942;ZNF423:-0.633378254611;YY1:-0.647666926917;MYB:-0.649761045358;PDX1:-0.651880037143;NR1H4:-0.656342293349;STAT5{A,B}:-0.669607333829;FOXM1:-0.674182940141;DBP:-0.681990673704;FOXQ1:-0.690140461729;ZBTB6:-0.736516096007;HOX{A6,A7,B6,B7}:-0.750465219001;HIF1A:-0.754703471838;CDC5L:-0.757006937649;GFI1B:-0.760931327373;NFATC1..3:-0.821841938712;HOX{A4,D4}:-0.830817870367;POU6F1:-0.838200077913;SOX{8,9,10}:-0.844176612337;ALX1:-0.844245916731;SNAI1..3:-0.84527827203;TLX1..3_NFIC{dimer}:-0.856593717687;PAX5:-0.879315149389;FOXP1:-0.883194845839;TP53:-0.892362909319;ZIC1..3:-0.914381654567;BREu{core}:-0.970411730583;SP1:-1.01299626113;EGR1..3:-1.01486160191;POU2F1..3:-1.02525290196;HSF1,2:-1.05228746543;TOPORS:-1.09715158677;GTF2I:-1.09823957073;POU3F1..4:-1.10676898117;ATF6:-1.11553973197;STAT1,3:-1.11624501119;GTF2A1,2:-1.12772715158;BPTF:-1.12926465781;TEAD1:-1.14279919137;XBP1:-1.16218911064;MYBL2:-1.16345775015;TFAP2{A,C}:-1.16512259816;TEF:-1.16583211906;SOX2:-1.16588485985;NANOG:-1.21097736105;RREB1:-1.21665171239;HIC1:-1.22546432455;TFAP2B:-1.24127690437;GCM1,2:-1.24478502857;LEF1_TCF7_TCF7L1,2:-1.24528134595;XCPE1{core}:-1.25322160102;PAX3,7:-1.27149339931;MED-1{core}:-1.2950615112;JUN:-1.29860095586;ZFP161:-1.30457811672;AHR_ARNT_ARNT2:-1.3061928436;PITX1..3:-1.3259622676;CREB1:-1.32837054547;FOXL1:-1.33495847361;E2F1..5:-1.36902228577;ADNP_IRX_SIX_ZHX:-1.39609658838;SOX17:-1.39758769819;FOX{I1,J2}:-1.42016133123;ELK1,4_GABP{A,B1}:-1.42209554144;AIRE:-1.44172402331;NKX3-1:-1.4447929525;ZNF143:-1.44862574932;EVI1:-1.48142689683;MTE{core}:-1.53863855081;MAZ:-1.54143710794;HBP1_HMGB_SSRP1_UBTF:-1.55334012252;NFY{A,B,C}:-1.55605158453;RFX1:-1.56952287066;ZNF384:-1.59344789929;PATZ1:-1.61649592058;RBPJ:-1.61874896336;TBX4,5:-1.66925794032;MZF1:-1.69242129116;NRF1:-1.70736589658;GFI1:-1.78417178763;NKX2-1,4:-1.79039303151;PBX1:-1.87465823532;TFDP1:-2.0410995313;POU1F1:-2.27462104393 | |top_motifs=SREBF1,2:2.85139889757;EN1,2:1.85365628891;RXRA_VDR{dimer}:1.80966439535;NR6A1:1.66662867324;ESRRA:1.51251476718;PAX8:1.39783315289;IRF7:1.33729727182;ESR1:1.27417370157;IRF1,2:1.20747216549;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.20117813585;SPIB:1.18520637076;NFIL3:1.18401943264;NANOG{mouse}:1.16726055228;TFCP2:1.10905832843;DMAP1_NCOR{1,2}_SMARC:1.06544407211;SPI1:1.04060257043;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.988391522776;FOXD3:0.935031988998;HMX1:0.791770761265;LHX3,4:0.779965990423;NFE2L1:0.762552394322;RXR{A,B,G}:0.758542190411;NKX2-2,8:0.743786753881;IKZF2:0.743642366401;EBF1:0.741349315581;GLI1..3:0.730551525833;HNF4A_NR2F1,2:0.677514840754;NFE2L2:0.637718796571;HLF:0.623981625924;NFKB1_REL_RELA:0.616028718282;ETS1,2:0.604597396181;FOXP3:0.562160908955;HAND1,2:0.556538706813;POU5F1:0.551298210138;MYOD1:0.538803605229;PAX1,9:0.528651617136;TLX2:0.510314786881;OCT4_SOX2{dimer}:0.492204185016;EP300:0.464670733604;PPARG:0.462445669689;NKX6-1,2:0.424629858991;SMAD1..7,9:0.404825097592;CEBPA,B_DDIT3:0.375051525231;HES1:0.372934619258;RORA:0.356876459263;STAT2,4,6:0.346466923095;ARID5B:0.303285726772;RUNX1..3:0.299523116515;PAX2:0.29124357275;SPZ1:0.267180667995;NKX3-2:0.214213955428;TBP:0.213528064862;MAFB:0.142341882055;IKZF1:0.139495438478;CDX1,2,4:0.109787941942;MTF1:0.0928545122845;ELF1,2,4:0.0663078786501;ALX4:0.0603325774862;VSX1,2:0.0354622519657;NFE2:0.0304379679336;FOSL2:0.0294982610737;TGIF1:-0.00930457922819;NFIX:-0.0133634491052;KLF4:-0.0152592164011;NR5A1,2:-0.0363014444675;FOX{F1,F2,J1}:-0.0387214578461;PRDM1:-0.0409043552836;PAX6:-0.0443688688057;ATF4:-0.050444339884;MYFfamily:-0.0554909113355;bHLH_family:-0.0648289447021;NHLH1,2:-0.0693294725137;GATA4:-0.0969060229328;ZEB1:-0.100382237085;TFAP4:-0.10124135496;NKX2-3_NKX2-5:-0.101659555971;ZBTB16:-0.102011678122;REST:-0.107775419545;UFEwm:-0.111452360327;FOS_FOS{B,L1}_JUN{B,D}:-0.128328647056;PRRX1,2:-0.149818253554;TAL1_TCF{3,4,12}:-0.155489029306;RFX2..5_RFXANK_RFXAP:-0.166775959297;HMGA1,2:-0.175603627004;GATA6:-0.178650087258;FOXO1,3,4:-0.211909518949;PAX4:-0.249678828127;BACH2:-0.280383276964;HOXA9_MEIS1:-0.291912394257;CRX:-0.293714141655;FOXA2:-0.306521839364;NR3C1:-0.321242274619;HOX{A5,B5}:-0.330484670702;GZF1:-0.354757537875;SRF:-0.381842765829;ATF5_CREB3:-0.397550932109;SOX5:-0.431131890503;LMO2:-0.459558961306;CUX2:-0.501223508545;ATF2:-0.522331964018;FOXN1:-0.525262606596;ZNF238:-0.559005798259;T:-0.560638517252;ONECUT1,2:-0.564938875821;AR:-0.571987613146;HNF1A:-0.578560903652;FOX{D1,D2}:-0.582405711042;MEF2{A,B,C,D}:-0.609208236752;ZNF148:-0.633267497942;ZNF423:-0.633378254611;YY1:-0.647666926917;MYB:-0.649761045358;PDX1:-0.651880037143;NR1H4:-0.656342293349;STAT5{A,B}:-0.669607333829;FOXM1:-0.674182940141;DBP:-0.681990673704;FOXQ1:-0.690140461729;ZBTB6:-0.736516096007;HOX{A6,A7,B6,B7}:-0.750465219001;HIF1A:-0.754703471838;CDC5L:-0.757006937649;GFI1B:-0.760931327373;NFATC1..3:-0.821841938712;HOX{A4,D4}:-0.830817870367;POU6F1:-0.838200077913;SOX{8,9,10}:-0.844176612337;ALX1:-0.844245916731;SNAI1..3:-0.84527827203;TLX1..3_NFIC{dimer}:-0.856593717687;PAX5:-0.879315149389;FOXP1:-0.883194845839;TP53:-0.892362909319;ZIC1..3:-0.914381654567;BREu{core}:-0.970411730583;SP1:-1.01299626113;EGR1..3:-1.01486160191;POU2F1..3:-1.02525290196;HSF1,2:-1.05228746543;TOPORS:-1.09715158677;GTF2I:-1.09823957073;POU3F1..4:-1.10676898117;ATF6:-1.11553973197;STAT1,3:-1.11624501119;GTF2A1,2:-1.12772715158;BPTF:-1.12926465781;TEAD1:-1.14279919137;XBP1:-1.16218911064;MYBL2:-1.16345775015;TFAP2{A,C}:-1.16512259816;TEF:-1.16583211906;SOX2:-1.16588485985;NANOG:-1.21097736105;RREB1:-1.21665171239;HIC1:-1.22546432455;TFAP2B:-1.24127690437;GCM1,2:-1.24478502857;LEF1_TCF7_TCF7L1,2:-1.24528134595;XCPE1{core}:-1.25322160102;PAX3,7:-1.27149339931;MED-1{core}:-1.2950615112;JUN:-1.29860095586;ZFP161:-1.30457811672;AHR_ARNT_ARNT2:-1.3061928436;PITX1..3:-1.3259622676;CREB1:-1.32837054547;FOXL1:-1.33495847361;E2F1..5:-1.36902228577;ADNP_IRX_SIX_ZHX:-1.39609658838;SOX17:-1.39758769819;FOX{I1,J2}:-1.42016133123;ELK1,4_GABP{A,B1}:-1.42209554144;AIRE:-1.44172402331;NKX3-1:-1.4447929525;ZNF143:-1.44862574932;EVI1:-1.48142689683;MTE{core}:-1.53863855081;MAZ:-1.54143710794;HBP1_HMGB_SSRP1_UBTF:-1.55334012252;NFY{A,B,C}:-1.55605158453;RFX1:-1.56952287066;ZNF384:-1.59344789929;PATZ1:-1.61649592058;RBPJ:-1.61874896336;TBX4,5:-1.66925794032;MZF1:-1.69242129116;NRF1:-1.70736589658;GFI1:-1.78417178763;NKX2-1,4:-1.79039303151;PBX1:-1.87465823532;TFDP1:-2.0410995313;POU1F1:-2.27462104393 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:13317-143A5;search_select_hide=table117:FF:13317-143A5 | |||
| | |||
}} | }} |
Latest revision as of 18:56, 4 June 2020
Name: | Monocyte-derived macrophages response to udorn influenza infection |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs13646 |
Sample type: | time courses |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13646
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13646
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.082 |
10 | 10 | 0.0711 |
100 | 100 | 0.774 |
101 | 101 | 0.349 |
102 | 102 | 0.848 |
103 | 103 | 0.0676 |
104 | 104 | 0.965 |
105 | 105 | 0.378 |
106 | 106 | 0.00569 |
107 | 107 | 0.0917 |
108 | 108 | 0.634 |
109 | 109 | 0.0741 |
11 | 11 | 0.0545 |
110 | 110 | 0.117 |
111 | 111 | 0.00398 |
112 | 112 | 0.0297 |
113 | 113 | 0.917 |
114 | 114 | 0.00808 |
115 | 115 | 0.721 |
116 | 116 | 0.532 |
117 | 117 | 0.186 |
118 | 118 | 0.38 |
119 | 119 | 0.035 |
12 | 12 | 0.852 |
120 | 120 | 0.201 |
121 | 121 | 0.516 |
122 | 122 | 0.906 |
123 | 123 | 0.226 |
124 | 124 | 0.25 |
125 | 125 | 0.124 |
126 | 126 | 0.307 |
127 | 127 | 0.099 |
128 | 128 | 0.0162 |
129 | 129 | 0.168 |
13 | 13 | 0.104 |
130 | 130 | 0.731 |
131 | 131 | 0.831 |
132 | 132 | 0.647 |
133 | 133 | 0.978 |
134 | 134 | 0.64 |
135 | 135 | 0.0368 |
136 | 136 | 0.81 |
137 | 137 | 0.152 |
138 | 138 | 0.378 |
139 | 139 | 0.034 |
14 | 14 | 0.448 |
140 | 140 | 0.0267 |
141 | 141 | 0.542 |
142 | 142 | 0.851 |
143 | 143 | 0.0617 |
144 | 144 | 0.506 |
145 | 145 | 0.184 |
146 | 146 | 0.788 |
147 | 147 | 0.844 |
148 | 148 | 0.0161 |
149 | 149 | 0.131 |
15 | 15 | 0.0882 |
150 | 150 | 0.464 |
151 | 151 | 0.517 |
152 | 152 | 0.153 |
153 | 153 | 0.8 |
154 | 154 | 0.913 |
155 | 155 | 0.157 |
156 | 156 | 0.86 |
157 | 157 | 0.753 |
158 | 158 | 0.602 |
159 | 159 | 0.377 |
16 | 16 | 0.168 |
160 | 160 | 0.0644 |
161 | 161 | 0.279 |
162 | 162 | 0.778 |
163 | 163 | 0.908 |
164 | 164 | 0.205 |
165 | 165 | 0.324 |
166 | 166 | 0.951 |
167 | 167 | 0.226 |
168 | 168 | 0.582 |
169 | 169 | 0.00541 |
17 | 17 | 0.107 |
18 | 18 | 0.131 |
19 | 19 | 0.161 |
2 | 2 | 0.693 |
20 | 20 | 0.982 |
21 | 21 | 0.461 |
22 | 22 | 0.232 |
23 | 23 | 0.165 |
24 | 24 | 0.226 |
25 | 25 | 0.569 |
26 | 26 | 0.0214 |
27 | 27 | 0.152 |
28 | 28 | 0.804 |
29 | 29 | 0.199 |
3 | 3 | 0.0817 |
30 | 30 | 0.841 |
31 | 31 | 0.533 |
32 | 32 | 0.111 |
33 | 33 | 0.398 |
34 | 34 | 0.377 |
35 | 35 | 0.305 |
36 | 36 | 0.0278 |
37 | 37 | 0.101 |
38 | 38 | 0.152 |
39 | 39 | 0.469 |
4 | 4 | 0.718 |
40 | 40 | 0.0674 |
41 | 41 | 0.129 |
42 | 42 | 0.587 |
43 | 43 | 0.0992 |
44 | 44 | 0.0225 |
45 | 45 | 0.526 |
46 | 46 | 0.0809 |
47 | 47 | 0.234 |
48 | 48 | 0.242 |
49 | 49 | 0.137 |
5 | 5 | 0.326 |
50 | 50 | 0.91 |
51 | 51 | 0.304 |
52 | 52 | 0.273 |
53 | 53 | 0.488 |
54 | 54 | 0.309 |
55 | 55 | 0.116 |
56 | 56 | 0.576 |
57 | 57 | 0.316 |
58 | 58 | 0.296 |
59 | 59 | 0.0598 |
6 | 6 | 0.513 |
60 | 60 | 0.0462 |
61 | 61 | 0.292 |
62 | 62 | 0.163 |
63 | 63 | 0.23 |
64 | 64 | 0.228 |
65 | 65 | 0.0606 |
66 | 66 | 0.797 |
67 | 67 | 0.176 |
68 | 68 | 0.583 |
69 | 69 | 0.28 |
7 | 7 | 0.228 |
70 | 70 | 0.00843 |
71 | 71 | 0.0445 |
72 | 72 | 0.239 |
73 | 73 | 0.0987 |
74 | 74 | 0.691 |
75 | 75 | 0.0954 |
76 | 76 | 0.643 |
77 | 77 | 0.129 |
78 | 78 | 0.12 |
79 | 79 | 0.054 |
8 | 8 | 0.0603 |
80 | 80 | 0.623 |
81 | 81 | 0.181 |
82 | 82 | 0.0347 |
83 | 83 | 0.342 |
84 | 84 | 0.779 |
85 | 85 | 0.00695 |
86 | 86 | 0.209 |
87 | 87 | 0.203 |
88 | 88 | 0.63 |
89 | 89 | 0.0733 |
9 | 9 | 0.313 |
90 | 90 | 0.0445 |
91 | 91 | 0.468 |
92 | 92 | 0.107 |
93 | 93 | 0.487 |
94 | 94 | 0.0173 |
95 | 95 | 0.154 |
96 | 96 | 0.0858 |
97 | 97 | 0.782 |
98 | 98 | 0.0778 |
99 | 99 | 0.737 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13646
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0011215 human Monocyte-derived macrophages 0h after udorn influenza infection sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0000255 (eukaryotic cell)
0000235 (macrophage)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000357 (0 hr sample)
0000086 (human macrophage sample)
0000647 (udorn influenza infection sample)
0011215 (human Monocyte-derived macrophages 0h after udorn influenza infection sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)