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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005488
|DRA_sample_Accession=CAGE@SAMD00005488
|accession_numbers=CAGE;DRX008496;DRR009368;DRZ000793;DRZ002178
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005488
|accession_numbers=CAGE;DRX008496;DRR009368;DRZ000793;DRZ002178;DRZ012143;DRZ013528
|accession_numbers_RNASeq=sRNA-Seq;DRX037245;DRR041611;DRZ007253
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002367,UBERON:0005156,UBERON:0004119,UBERON:0000062,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002530,UBERON:0010147,UBERON:0010317,UBERON:0003937,UBERON:0005399,UBERON:0003101,UBERON:0000079
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002367,UBERON:0005156,UBERON:0004119,UBERON:0000062,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002530,UBERON:0010147,UBERON:0010317,UBERON:0003937,UBERON:0005399,UBERON:0003101,UBERON:0000079
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:1000487
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:1000487
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|def=
|def=
|expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!2.45!281.11!TCF21;;chr16:86544113..86544145,+!p1@FOXF1!2.13!162.62!FOXF1;;chr5:134369879..134369898,-!p2@PITX1!2.11!127.12!PITX1;;chr5:134369905..134369972,-!p1@PITX1!1.99!145.93!PITX1;;chr11:46299199..46299233,+!p1@CREB3L1!1.65!213.24!CREB3L1;;chr4:174451370..174451387,-!p1@HAND2!1.52!32.24!HAND2;;chr11:46299539..46299620,+!p2@CREB3L1!1.49!49.21!CREB3L1;;chr15:42749722..42749739,-!p2@ZFP106!1.47!50.34!ZFP106;;chr4:174450089..174450153,-!p2@HAND2!1.35!21.49!HAND2;;chr18:19749541..19749557,+!p1@GATA6!1.34!64.76!GATA6;;chr7:27224842..27224872,-!p1@HOXA11!1.27!17.68!HOXA11;;chr5:92918919..92918942,+!p1@NR2F1!1.23!70.14!NR2F1;;chr19:50432453..50432468,+!p1@ATF5!1.19!798.52!ATF5;;chr7:27192185..27192209,-!p1@HOXA3!1.16!13.29!HOXA3;;chr7:27224795..27224840,-!p2@HOXA11!1.12!12.16!HOXA11;;chr17:1959369..1959388,+!p2@HIC1!1.10!30.83!HIC1;;chr15:57511609..57511651,+!p2@TCF12!1.09!19.23!TCF12;;chr7:35293685..35293718,-!p1@TBX20!1.05!10.32!TBX20;;chr19:50435736..50435781,+!p3@ATF5!1.04!13.72!ATF5;;chr18:19749386..19749404,+!p2@GATA6!1.00!13.01!GATA6;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.00!9.05!SEBOX;;chr19:45260775..45260838,+!p5@BCL3!0.99!11.60!BCL3;;chr5:92918956..92918969,+!p4@NR2F1!0.99!9.76!NR2F1;;chr5:134369848..134369853,-!p6@PITX1!0.98!8.48!PITX1;;chr7:27205136..27205164,-!p1@HOXA9!0.98!8.48!HOXA9;;chr10:63809106..63809127,+!p1@ARID5B!0.97!116.66!ARID5B;;chr17:59477233..59477263,+!p1@TBX2!0.97!26.30!TBX2;;chr1:164528687..164528711,+!p6@PBX1!0.94!9.05!PBX1;;chr5:92919375..92919438,+!p6@NR2F1!0.94!8.34!NR2F1;;chr15:67430351..67430366,+!p10@SMAD3!0.91!7.07!SMAD3;;chr8:106330656..106330684,+!p1@ZFPM2!0.90!19.09!ZFPM2;;chr17:46132044..46132080,+!p4@NFE2L1!0.90!6.93!NFE2L1;;chr2:19558373..19558392,-!p1@OSR1!0.88!18.81!OSR1;;chr19:13134772..13134822,+!p2@NFIX!0.88!9.90!NFIX;;chr11:46299443..46299459,+!p4@CREB3L1!0.88!6.65!CREB3L1;;chr7:27239703..27239715,-!p1@HOXA13!0.88!6.65!HOXA13;;chr2:121493492..121493537,+!p2@GLI2!0.87!11.03!GLI2;;chrY:21906594..21906622,-!p1@KDM5D!0.87!6.36!KDM5D;;chr11:46333934..46333963,+!p5@CREB3L1!0.85!6.08!CREB3L1;;chr5:321810..321877,+!p1@AHRR!0.84!19.80!AHRR;;chr1:164528445..164528459,+!p2@PBX1!0.84!19.37!PBX1;;chr5:92919100..92919135,+!p3@NR2F1!0.84!7.35!NR2F1;;chr10:63853436..63853442,+!p4@ARID5B!0.83!32.95!ARID5B;;chr3:141121847..141121868,+!p5@ZBTB38!0.83!9.05!ZBTB38;;chr4:111558135..111558198,-!p2@PITX2!0.82!5.66!PITX2;;chr2:66662281..66662308,+!p1@MEIS1!0.81!20.08!MEIS1;;chr1:164528616..164528660,+!p5@PBX1!0.80!11.60!PBX1;;chr18:19749517..19749531,+!p3@GATA6!0.80!9.90!GATA6;;chr5:92918894..92918912,+!p2@NR2F1!0.79!18.24!NR2F1;;chr10:63809013..63809041,+!p3@ARID5B!0.78!30.26!ARID5B;;chr2:239756671..239756732,+!p1@TWIST2!0.78!17.53!TWIST2;;chr5:134369643..134369675,-!p4@PITX1!0.77!4.95!PITX1;;chr2:121493425..121493474,+!p1@GLI2!0.76!11.17!GLI2;;chr9:16870659..16870675,-!p2@BNC2!0.76!5.94!BNC2;;chr7:27205106..27205134,-!p2@HOXA9!0.75!4.67!HOXA9;;chr9:128509663..128509715,+!p1@PBX3!0.74!16.69!PBX3;;chr6:1389789..1389821,+!p1@FOXF2!0.74!6.36!FOXF2;;chr2:66662895..66662907,+!p3@MEIS1!0.74!5.80!MEIS1;;chr5:92920456..92920488,+!p9@NR2F1!0.74!5.37!NR2F1;;chr11:46299186..46299195,+!p3@CREB3L1!0.73!4.95!CREB3L1;;chr2:66662510..66662521,+!p6@MEIS1!0.73!4.38!MEIS1;;chr17:1958388..1958404,+!p1@HIC1!0.72!30.40!HIC1;;chr8:72756667..72756736,-!p2@MSC!0.72!7.07!MSC;;chr10:63809090..63809097,+!p7@ARID5B!0.72!6.22!ARID5B;;chr7:27196267..27196311,-!p1@HOXA7!0.72!4.24!HOXA7;;chr5:92919068..92919082,+!p5@NR2F1!0.71!5.09!NR2F1;;chr18:53068911..53068935,-!p4@TCF4!0.71!4.81!TCF4;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!0.71!4.10!SEBOX;;chr7:27239740..27239759,-!p2@HOXA13!0.71!4.10!HOXA13;;chrY:2803415..2803468,+!p1@ZFY!0.71!4.10!ZFY;;chr19:31840130..31840160,-!p2@TSHZ3!0.70!6.65!TSHZ3;;chr1:164528911..164528940,+!p7@PBX1!0.70!6.36!PBX1;;chr2:46524537..46524553,+!p1@EPAS1!0.69!443.73!EPAS1;;chr9:73029219..73029289,-!p2@KLF9!0.68!12.87!KLF9;;chr5:134369973..134369984,-!p3@PITX1!0.68!3.82!PITX1;;chr7:27213893..27213954,-!p1@HOXA10!0.68!3.82!HOXA10;;chr3:178789522..178789564,-!p2@ZMAT3!0.67!30.83!ZMAT3;;chr17:59477275..59477286,+!p3@TBX2!0.67!5.09!TBX2;;chr6:85473156..85473210,-!p2@TBX18!0.67!4.67!TBX18;;chr11:46333979..46333991,+!p7@CREB3L1!0.67!3.68!CREB3L1;;chr8:48650715..48650735,-!p1@CEBPD!0.66!527.44!CEBPD;;chr2:66662249..66662267,+!p2@MEIS1!0.65!15.13!MEIS1;;chr2:239756739..239756755,+!p2@TWIST2!0.65!6.36!TWIST2;;chr10:94449703..94449718,+!p1@HHEX!0.64!14.85!HHEX;;chr1:158979872..158979898,+!p3@IFI16!0.64!11.88!IFI16;;chr10:63809077..63809089,+!p5@ARID5B!0.64!8.06!ARID5B;;chr8:99956662..99956684,+!p1@OSR2!0.64!5.51!OSR2;;chr8:73921136..73921151,+!p2@TERF1!0.64!5.37!TERF1;;chr7:27153454..27153469,-!p2@HOXA3!0.64!3.39!HOXA3;;chr16:31076332..31076388,-!p3@ZNF668!0.64!3.39!ZNF668;;chr1:164528410..164528428,+!p1@PBX1!0.63!28.99!PBX1;;chr1:164528975..164528998,+!p13@PBX1!0.63!3.25!PBX1;;chr11:125034640..125034655,+!p1@PKNOX2!0.63!3.25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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1000487;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000079;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000161;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000990;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001353;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002367;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005153;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005157;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005399;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
|fonse_cell_line=
|fonse_cell_line=
Line 41: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Prostate%252c%2520donor2.CNhs11976.11335-117F3.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Prostate%252c%2520donor2.CNhs11976.11335-117F3.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Prostate%252c%2520donor2.CNhs11976.11335-117F3.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Prostate%252c%2520donor2.CNhs11976.11335-117F3.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Prostate%252c%2520donor2.CNhs11976.11335-117F3.hg38.nobarcode.ctss.bed.gz
|id=FF:11335-117F3
|id=FF:11335-117F3
|is_a=EFO:0002091;;FF:0000183
|is_a=EFO:0002091;;FF:0000183
Line 46: Line 54:
|library_id=CNhs11976
|library_id=CNhs11976
|library_id_phase_based=2:CNhs11976
|library_id_phase_based=2:CNhs11976
|name="Smooth Muscle Cells - Prostate, donor2"
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11335
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10014.GAGTGG.11335
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11335
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10014.GAGTGG.11335
|name=Smooth Muscle Cells - Prostate, donor2
|namespace=FANTOM5
|namespace=FANTOM5
|part_of=
|part_of=
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage="CNhs11976,LSID836,release011,COMPLETED"
|profile_hcage=CNhs11976,LSID836,release011,COMPLETED
|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq="SRhi10014,,,"
|profile_srnaseq=SRhi10014,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 67: Line 82:
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|sample_category=primary cells
Line 90: Line 106:
|top_motifs=TAL1_TCF{3,4,12}:2.58033047666;ALX4:2.31844858469;NKX3-1:1.83942716071;UFEwm:1.83517074604;MYBL2:1.81363812252;ESR1:1.69852742954;KLF4:1.40847075638;TEF:1.37949445114;AIRE:1.36478375992;TOPORS:1.25415858824;PAX1,9:1.23478024008;ZNF238:1.14495926916;NFE2L1:1.1395906409;EN1,2:1.10246565383;XBP1:1.09947956046;GZF1:1.08301103293;TFAP4:1.07258533406;NKX2-2,8:1.06152020016;HOX{A4,D4}:1.03815359903;RXR{A,B,G}:1.00167448684;HSF1,2:0.993400793003;LHX3,4:0.978559958621;EVI1:0.968617710298;HMGA1,2:0.947149440176;EBF1:0.944718340457;PATZ1:0.939699334055;GLI1..3:0.91508733092;TEAD1:0.860347908862;ZNF423:0.842881106242;GFI1B:0.826163704395;IKZF1:0.811511590273;NKX6-1,2:0.766109998449;HES1:0.763618185373;SPZ1:0.74861313684;YY1:0.740433530532;CDC5L:0.716247507608;MAFB:0.704307457651;MYFfamily:0.691396184104;NANOG{mouse}:0.685123713616;NFIX:0.666850052584;HOX{A5,B5}:0.633792935258;ATF6:0.628252019298;NR6A1:0.626372643699;ZNF384:0.622594147325;GTF2A1,2:0.619780693344;DBP:0.612842949459;TLX1..3_NFIC{dimer}:0.610034759745;FOXL1:0.581809007559;NFE2L2:0.543472818338;GTF2I:0.535390992074;TBX4,5:0.517066826073;TP53:0.484738368174;NR3C1:0.472436268535;ZBTB6:0.456465470889;PPARG:0.450587290784;STAT5{A,B}:0.447983502147;PRDM1:0.445274691642;CRX:0.444632813287;PAX5:0.432232779636;ZIC1..3:0.421761634186;NR1H4:0.417245882376;bHLH_family:0.379204408747;TFCP2:0.369912209434;RXRA_VDR{dimer}:0.365592243366;TFAP2{A,C}:0.36182556607;HOXA9_MEIS1:0.333276273881;MZF1:0.311730838329;HLF:0.304573499682;MAZ:0.298191573448;FOXO1,3,4:0.296452247605;SRF:0.294030199635;GATA4:0.290730813594;HMX1:0.272545728933;PAX4:0.257985453822;ELK1,4_GABP{A,B1}:0.247427808288;MTE{core}:0.244230209198;NFATC1..3:0.21070968094;EGR1..3:0.207906355819;TBP:0.1902801934;CEBPA,B_DDIT3:0.188866770319;HAND1,2:0.173157909125;HIC1:0.170650476183;NHLH1,2:0.169758365929;NR5A1,2:0.157976933856;RREB1:0.0993290650648;MTF1:0.0647089329435;TFAP2B:0.0632534618022;CDX1,2,4:0.0503087951243;FOXQ1:0.0442070741659;FOX{I1,J2}:0.0305514924133;STAT2,4,6:0.0295748333907;SOX17:0.029518275306;PITX1..3:0.0235865465768;FOXD3:0.00794990449228;HNF1A:-0.00951355011313;HNF4A_NR2F1,2:-0.01116146078;XCPE1{core}:-0.0156849974501;ZNF143:-0.0491973869151;NRF1:-0.0703185504146;FOXP3:-0.0741108375139;ZBTB16:-0.102473142092;FOXP1:-0.116387074737;PBX1:-0.126879523218;RFX1:-0.147291529566;AHR_ARNT_ARNT2:-0.14934454225;MYB:-0.150261417152;ESRRA:-0.154030938906;TLX2:-0.168565587186;ONECUT1,2:-0.173818969667;PAX6:-0.182391433992;T:-0.182399025855;POU3F1..4:-0.185866222904;NKX3-2:-0.189027780591;REST:-0.197754518627;IRF1,2:-0.202129026289;BACH2:-0.203727055968;DMAP1_NCOR{1,2}_SMARC:-0.210316782083;HIF1A:-0.211719002782;PAX8:-0.226371996884;LMO2:-0.23857820094;NFE2:-0.239340292937;STAT1,3:-0.243570063945;MED-1{core}:-0.247087253555;ZNF148:-0.247394443742;RFX2..5_RFXANK_RFXAP:-0.286123703634;SOX5:-0.341563307172;IRF7:-0.34660054522;HOX{A6,A7,B6,B7}:-0.347542106079;SREBF1,2:-0.37395457512;SMAD1..7,9:-0.376662103599;ZFP161:-0.376918169249;FOS_FOS{B,L1}_JUN{B,D}:-0.3812406382;FOX{D1,D2}:-0.38920754225;CREB1:-0.39018628956;GCM1,2:-0.390342131862;POU6F1:-0.398946582261;FOXM1:-0.404378082442;NFKB1_REL_RELA:-0.41481052921;GFI1:-0.419531695169;ATF2:-0.423009516418;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.436019400335;POU5F1:-0.443764308903;ARID5B:-0.444196651004;SP1:-0.473408571121;RUNX1..3:-0.493287431014;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.518734575674;FOSL2:-0.522159664961;AR:-0.532259594569;E2F1..5:-0.544133803866;NFY{A,B,C}:-0.548439496768;TFDP1:-0.567825758245;ELF1,2,4:-0.574854710223;SPI1:-0.592170973424;PRRX1,2:-0.603014161662;ATF4:-0.617950581465;ATF5_CREB3:-0.620400547709;BPTF:-0.626741242917;CUX2:-0.635248157174;SPIB:-0.639263696575;LEF1_TCF7_TCF7L1,2:-0.642608511856;PAX3,7:-0.675768863168;ETS1,2:-0.703633316735;NKX2-3_NKX2-5:-0.704937162621;POU1F1:-0.709994238955;JUN:-0.711911940221;PAX2:-0.730572064674;TGIF1:-0.741366916386;SOX2:-0.775087597847;FOXA2:-0.785600373501;PDX1:-0.793927095963;SNAI1..3:-0.799793980817;FOX{F1,F2,J1}:-0.800024943082;ADNP_IRX_SIX_ZHX:-0.830068020351;GATA6:-0.839674455445;VSX1,2:-0.85629317266;NFIL3:-0.858182645821;ALX1:-0.8582121865;MEF2{A,B,C,D}:-0.870422168456;FOXN1:-0.879810110812;MYOD1:-0.906227683799;SOX{8,9,10}:-0.944119081566;IKZF2:-0.959146650738;ZEB1:-0.967927412369;BREu{core}:-0.987383293665;OCT4_SOX2{dimer}:-0.991015777718;NKX2-1,4:-1.08440639007;EP300:-1.12095861382;POU2F1..3:-1.3519623;RBPJ:-1.41283354908;RORA:-1.4386252608;NANOG:-1.67129160921;HBP1_HMGB_SSRP1_UBTF:-2.01044005743
|top_motifs=TAL1_TCF{3,4,12}:2.58033047666;ALX4:2.31844858469;NKX3-1:1.83942716071;UFEwm:1.83517074604;MYBL2:1.81363812252;ESR1:1.69852742954;KLF4:1.40847075638;TEF:1.37949445114;AIRE:1.36478375992;TOPORS:1.25415858824;PAX1,9:1.23478024008;ZNF238:1.14495926916;NFE2L1:1.1395906409;EN1,2:1.10246565383;XBP1:1.09947956046;GZF1:1.08301103293;TFAP4:1.07258533406;NKX2-2,8:1.06152020016;HOX{A4,D4}:1.03815359903;RXR{A,B,G}:1.00167448684;HSF1,2:0.993400793003;LHX3,4:0.978559958621;EVI1:0.968617710298;HMGA1,2:0.947149440176;EBF1:0.944718340457;PATZ1:0.939699334055;GLI1..3:0.91508733092;TEAD1:0.860347908862;ZNF423:0.842881106242;GFI1B:0.826163704395;IKZF1:0.811511590273;NKX6-1,2:0.766109998449;HES1:0.763618185373;SPZ1:0.74861313684;YY1:0.740433530532;CDC5L:0.716247507608;MAFB:0.704307457651;MYFfamily:0.691396184104;NANOG{mouse}:0.685123713616;NFIX:0.666850052584;HOX{A5,B5}:0.633792935258;ATF6:0.628252019298;NR6A1:0.626372643699;ZNF384:0.622594147325;GTF2A1,2:0.619780693344;DBP:0.612842949459;TLX1..3_NFIC{dimer}:0.610034759745;FOXL1:0.581809007559;NFE2L2:0.543472818338;GTF2I:0.535390992074;TBX4,5:0.517066826073;TP53:0.484738368174;NR3C1:0.472436268535;ZBTB6:0.456465470889;PPARG:0.450587290784;STAT5{A,B}:0.447983502147;PRDM1:0.445274691642;CRX:0.444632813287;PAX5:0.432232779636;ZIC1..3:0.421761634186;NR1H4:0.417245882376;bHLH_family:0.379204408747;TFCP2:0.369912209434;RXRA_VDR{dimer}:0.365592243366;TFAP2{A,C}:0.36182556607;HOXA9_MEIS1:0.333276273881;MZF1:0.311730838329;HLF:0.304573499682;MAZ:0.298191573448;FOXO1,3,4:0.296452247605;SRF:0.294030199635;GATA4:0.290730813594;HMX1:0.272545728933;PAX4:0.257985453822;ELK1,4_GABP{A,B1}:0.247427808288;MTE{core}:0.244230209198;NFATC1..3:0.21070968094;EGR1..3:0.207906355819;TBP:0.1902801934;CEBPA,B_DDIT3:0.188866770319;HAND1,2:0.173157909125;HIC1:0.170650476183;NHLH1,2:0.169758365929;NR5A1,2:0.157976933856;RREB1:0.0993290650648;MTF1:0.0647089329435;TFAP2B:0.0632534618022;CDX1,2,4:0.0503087951243;FOXQ1:0.0442070741659;FOX{I1,J2}:0.0305514924133;STAT2,4,6:0.0295748333907;SOX17:0.029518275306;PITX1..3:0.0235865465768;FOXD3:0.00794990449228;HNF1A:-0.00951355011313;HNF4A_NR2F1,2:-0.01116146078;XCPE1{core}:-0.0156849974501;ZNF143:-0.0491973869151;NRF1:-0.0703185504146;FOXP3:-0.0741108375139;ZBTB16:-0.102473142092;FOXP1:-0.116387074737;PBX1:-0.126879523218;RFX1:-0.147291529566;AHR_ARNT_ARNT2:-0.14934454225;MYB:-0.150261417152;ESRRA:-0.154030938906;TLX2:-0.168565587186;ONECUT1,2:-0.173818969667;PAX6:-0.182391433992;T:-0.182399025855;POU3F1..4:-0.185866222904;NKX3-2:-0.189027780591;REST:-0.197754518627;IRF1,2:-0.202129026289;BACH2:-0.203727055968;DMAP1_NCOR{1,2}_SMARC:-0.210316782083;HIF1A:-0.211719002782;PAX8:-0.226371996884;LMO2:-0.23857820094;NFE2:-0.239340292937;STAT1,3:-0.243570063945;MED-1{core}:-0.247087253555;ZNF148:-0.247394443742;RFX2..5_RFXANK_RFXAP:-0.286123703634;SOX5:-0.341563307172;IRF7:-0.34660054522;HOX{A6,A7,B6,B7}:-0.347542106079;SREBF1,2:-0.37395457512;SMAD1..7,9:-0.376662103599;ZFP161:-0.376918169249;FOS_FOS{B,L1}_JUN{B,D}:-0.3812406382;FOX{D1,D2}:-0.38920754225;CREB1:-0.39018628956;GCM1,2:-0.390342131862;POU6F1:-0.398946582261;FOXM1:-0.404378082442;NFKB1_REL_RELA:-0.41481052921;GFI1:-0.419531695169;ATF2:-0.423009516418;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.436019400335;POU5F1:-0.443764308903;ARID5B:-0.444196651004;SP1:-0.473408571121;RUNX1..3:-0.493287431014;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.518734575674;FOSL2:-0.522159664961;AR:-0.532259594569;E2F1..5:-0.544133803866;NFY{A,B,C}:-0.548439496768;TFDP1:-0.567825758245;ELF1,2,4:-0.574854710223;SPI1:-0.592170973424;PRRX1,2:-0.603014161662;ATF4:-0.617950581465;ATF5_CREB3:-0.620400547709;BPTF:-0.626741242917;CUX2:-0.635248157174;SPIB:-0.639263696575;LEF1_TCF7_TCF7L1,2:-0.642608511856;PAX3,7:-0.675768863168;ETS1,2:-0.703633316735;NKX2-3_NKX2-5:-0.704937162621;POU1F1:-0.709994238955;JUN:-0.711911940221;PAX2:-0.730572064674;TGIF1:-0.741366916386;SOX2:-0.775087597847;FOXA2:-0.785600373501;PDX1:-0.793927095963;SNAI1..3:-0.799793980817;FOX{F1,F2,J1}:-0.800024943082;ADNP_IRX_SIX_ZHX:-0.830068020351;GATA6:-0.839674455445;VSX1,2:-0.85629317266;NFIL3:-0.858182645821;ALX1:-0.8582121865;MEF2{A,B,C,D}:-0.870422168456;FOXN1:-0.879810110812;MYOD1:-0.906227683799;SOX{8,9,10}:-0.944119081566;IKZF2:-0.959146650738;ZEB1:-0.967927412369;BREu{core}:-0.987383293665;OCT4_SOX2{dimer}:-0.991015777718;NKX2-1,4:-1.08440639007;EP300:-1.12095861382;POU2F1..3:-1.3519623;RBPJ:-1.41283354908;RORA:-1.4386252608;NANOG:-1.67129160921;HBP1_HMGB_SSRP1_UBTF:-2.01044005743
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11335-117F3;search_select_hide=table117:FF:11335-117F3
}}
}}

Latest revision as of 17:53, 4 June 2020

Name:Smooth Muscle Cells - Prostate, donor2
Species:Human (Homo sapiens)
Library ID:CNhs11976
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueprostate
dev stage34 years old adult
sexmale
age34
cell typesmooth muscle cell
cell lineNA
companyLonza
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberN/A
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005488
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11976 CAGE DRX008496 DRR009368
Accession ID Hg19

Library idBAMCTSS
CNhs11976 DRZ000793 DRZ002178
Accession ID Hg38

Library idBAMCTSS
CNhs11976 DRZ012143 DRZ013528
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005488
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10014.GAGTGG sRNA-Seq DRX037245 DRR041611
Accession ID Hg19

Library idBAMCTSS
SRhi10014.GAGTGG DRZ007253


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.162
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.137
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.329
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0105
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.15
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.199
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.0378
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.65
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0666
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.243
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0535
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.138
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.785
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.299
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.021
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.17
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.195
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.195
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.0574
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.809
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.785
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.267
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.795
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.0574
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.357
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11976

Jaspar motifP-value
MA0002.20.0442
MA0003.10.583
MA0004.10.0655
MA0006.10.129
MA0007.10.948
MA0009.10.449
MA0014.10.103
MA0017.10.423
MA0018.24.17417e-5
MA0019.10.163
MA0024.10.00865
MA0025.19.43535e-4
MA0027.10.802
MA0028.10.719
MA0029.10.515
MA0030.10.0748
MA0031.10.0626
MA0035.20.26
MA0038.10.0371
MA0039.20.00311
MA0040.10.528
MA0041.10.517
MA0042.10.602
MA0043.10.00817
MA0046.10.0641
MA0047.20.136
MA0048.10.164
MA0050.10.0936
MA0051.10.0534
MA0052.14.03618e-5
MA0055.10.673
MA0057.10.439
MA0058.10.0161
MA0059.10.78
MA0060.16.00621e-7
MA0061.10.109
MA0062.20.00155
MA0065.20.541
MA0066.10.614
MA0067.10.00641
MA0068.10.55
MA0069.10.119
MA0070.10.98
MA0071.10.568
MA0072.10.203
MA0073.10.973
MA0074.10.0368
MA0076.10.272
MA0077.10.673
MA0078.10.679
MA0079.20.64
MA0080.26.94865e-9
MA0081.10.00799
MA0083.10.686
MA0084.10.239
MA0087.10.923
MA0088.10.266
MA0090.10.0796
MA0091.13.43923e-4
MA0092.10.722
MA0093.10.0588
MA0099.21.93996e-8
MA0100.10.0712
MA0101.10.00232
MA0102.20.468
MA0103.10.0177
MA0104.20.0426
MA0105.10.747
MA0106.10.117
MA0107.10.00249
MA0108.20.355
MA0111.10.702
MA0112.20.0201
MA0113.10.941
MA0114.10.827
MA0115.10.212
MA0116.10.094
MA0117.10.549
MA0119.10.25
MA0122.10.158
MA0124.10.0737
MA0125.10.293
MA0131.10.717
MA0135.10.0303
MA0136.12.57107e-12
MA0137.20.766
MA0138.20.88
MA0139.10.606
MA0140.10.255
MA0141.10.646
MA0142.10.0301
MA0143.10.762
MA0144.10.646
MA0145.10.522
MA0146.10.0875
MA0147.10.144
MA0148.10.274
MA0149.10.617
MA0150.10.0309
MA0152.10.434
MA0153.10.797
MA0154.10.65
MA0155.10.165
MA0156.12.46623e-9
MA0157.10.0813
MA0159.10.966
MA0160.10.243
MA0162.10.217
MA0163.15.47243e-4
MA0164.10.434
MA0258.10.224
MA0259.10.298



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11976

Novel motifP-value
10.654
100.52
1000.0671
1010.482
1020.287
1030.696
1040.876
1050.0187
1060.698
1070.39
1080.4
1090.556
110.431
1100.384
1110.712
1120.402
1130.0293
1140.483
1150.00116
1160.0214
1170.517
1180.837
1190.393
120.187
1200.206
1210.0666
1220.00341
1230.319
1240.271
1250.247
1260.738
1270.177
1280.185
1290.112
130.965
1300.917
1310.322
1320.378
1330.809
1340.891
1350.943
1360.0925
1370.0638
1380.939
1390.0881
140.171
1400.998
1410.598
1420.957
1430.884
1440.182
1450.31
1460.482
1470.583
1480.672
1490.0116
150.239
1500.287
1510.558
1520.0185
1530.382
1540.985
1550.0836
1560.319
1570.184
1580.0125
1590.577
160.0376
1600.929
1610.671
1620.47
1630.729
1640.00584
1650.729
1660.112
1670.744
1680.544
1690.0257
170.942
180.318
190.00648
20.328
200.635
210.134
220.278
230.919
240.346
250.0561
260.296
270.887
280.0914
290.306
30.516
300.939
310.738
324.51469e-18
330.657
340.881
350.402
360.0506
370.0385
380.193
390.519
40.118
400.235
410.0901
420.57
430.936
440.109
450.384
460.509
470.606
480.89
490.359
50.588
500.794
510.666
520.94
530.312
540.701
550.624
560.94
570.932
580.228
590.169
60.594
600.657
610.664
620.617
630.522
640.68
650.998
660.2
670.757
680.818
690.997
70.0755
700.942
710.173
720.517
730.00413
740.0785
750.373
760.823
770.244
780.208
790.00235
80.123
800.0131
810.879
820.383
830.255
840.75
850.416
860.215
870.0821
880.608
890.2
90.956
900.597
910.634
920.392
930.314
940.732
950.1
960.37
970.84
980.381
990.00175



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11976


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
1000487 (smooth muscle cell of prostate)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002367 (prostate gland)
0005156 (reproductive structure)
0004119 (endoderm-derived structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002530 (gland)
0010147 (male accessory sex gland)
0010317 (germ layer / neural crest derived structure)
0003937 (sex gland)
0005399 (male reproductive gland)
0003101 (male organism)
0000079 (male reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000183 (human smooth muscle cell of prostate sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

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