FF:13311-142I8: Difference between revisions

Latest revision as of 18:56, 4 June 2020

Name:	Monocyte-derived macrophages response to udorn influenza infection
Species:	Human (Homo sapiens)
Library ID:	CNhs13639
Sample type:	time courses
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	n/a
age	adult
cell type	HMDM
cell line	Primary
company	NA
collaboration	Baillie/Tomoiu/Fisher/Hume
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005727

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13639		CAGE		DRX008599		DRR009471

Accession ID Hg19

Library id		BAM		CTSS
CNhs13639		DRZ000896		DRZ002281

Accession ID Hg38

Library id		BAM		CTSS
CNhs13639		DRZ012246		DRZ013631

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.441
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0.366
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.235
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	1.3
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0.493
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0154
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.82
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	1.062
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.921
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.878
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.348
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.585
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.637
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.397
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.35
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.493
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.396
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0.717
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	1.073
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.45
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0.493
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	1.453
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13639

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00296
MA0003.1	MA0003.1	0.168
MA0004.1	MA0004.1	0.648
MA0006.1	MA0006.1	0.721
MA0007.1	MA0007.1	0.199
MA0009.1	MA0009.1	0.0994
MA0014.1	MA0014.1	0.739
MA0017.1	MA0017.1	0.0275
MA0018.2	MA0018.2	6.6275e-4
MA0019.1	MA0019.1	0.207
MA0024.1	MA0024.1	0.0263
MA0025.1	MA0025.1	0.00541
MA0027.1	MA0027.1	0.479
MA0028.1	MA0028.1	0.0566
MA0029.1	MA0029.1	0.55
MA0030.1	MA0030.1	9.19678e-4
MA0031.1	MA0031.1	0.165
MA0035.2	MA0035.2	0.443
MA0038.1	MA0038.1	0.00506
MA0039.2	MA0039.2	0.275
MA0040.1	MA0040.1	0.954
MA0041.1	MA0041.1	0.0668
MA0042.1	MA0042.1	0.244
MA0043.1	MA0043.1	9.48741e-5
MA0046.1	MA0046.1	0.0317
MA0047.2	MA0047.2	0.816
MA0048.1	MA0048.1	0.979
MA0050.1	MA0050.1	0.515
MA0051.1	MA0051.1	0.94
MA0052.1	MA0052.1	0.0356
MA0055.1	MA0055.1	0.795
MA0057.1	MA0057.1	0.707
MA0058.1	MA0058.1	0.5
MA0059.1	MA0059.1	0.145
MA0060.1	MA0060.1	2.87353e-9
MA0061.1	MA0061.1	0.124
MA0062.2	MA0062.2	0.0703
MA0065.2	MA0065.2	0.00272
MA0066.1	MA0066.1	0.0132
MA0067.1	MA0067.1	0.763
MA0068.1	MA0068.1	1.48602e-4
MA0069.1	MA0069.1	0.894
MA0070.1	MA0070.1	0.318
MA0071.1	MA0071.1	0.0975
MA0072.1	MA0072.1	0.701
MA0073.1	MA0073.1	0.507
MA0074.1	MA0074.1	0.193
MA0076.1	MA0076.1	0.014
MA0077.1	MA0077.1	0.527
MA0078.1	MA0078.1	0.976
MA0079.2	MA0079.2	0.165
MA0080.2	MA0080.2	6.29503e-6
MA0081.1	MA0081.1	0.0567
MA0083.1	MA0083.1	0.899
MA0084.1	MA0084.1	0.221
MA0087.1	MA0087.1	0.709
MA0088.1	MA0088.1	0.429
MA0090.1	MA0090.1	0.258
MA0091.1	MA0091.1	0.0991
MA0092.1	MA0092.1	0.178
MA0093.1	MA0093.1	0.685
MA0099.2	MA0099.2	0.88
MA0100.1	MA0100.1	0.472
MA0101.1	MA0101.1	0.951
MA0102.2	MA0102.2	0.497
MA0103.1	MA0103.1	0.159
MA0104.2	MA0104.2	0.515
MA0105.1	MA0105.1	1.66128e-5
MA0106.1	MA0106.1	0.609
MA0107.1	MA0107.1	0.849
MA0108.2	MA0108.2	1.12156e-5
MA0111.1	MA0111.1	0.33
MA0112.2	MA0112.2	2.83741e-5
MA0113.1	MA0113.1	0.601
MA0114.1	MA0114.1	0.0472
MA0115.1	MA0115.1	0.642
MA0116.1	MA0116.1	4.00956e-5
MA0117.1	MA0117.1	0.938
MA0119.1	MA0119.1	0.213
MA0122.1	MA0122.1	0.645
MA0124.1	MA0124.1	0.221
MA0125.1	MA0125.1	0.382
MA0131.1	MA0131.1	0.251
MA0135.1	MA0135.1	0.425
MA0136.1	MA0136.1	0.133
MA0137.2	MA0137.2	0.0403
MA0138.2	MA0138.2	0.106
MA0139.1	MA0139.1	0.212
MA0140.1	MA0140.1	0.415
MA0141.1	MA0141.1	0.028
MA0142.1	MA0142.1	0.115
MA0143.1	MA0143.1	0.19
MA0144.1	MA0144.1	0.709
MA0145.1	MA0145.1	0.265
MA0146.1	MA0146.1	0.185
MA0147.1	MA0147.1	0.411
MA0148.1	MA0148.1	0.71
MA0149.1	MA0149.1	0.0225
MA0150.1	MA0150.1	0.418
MA0152.1	MA0152.1	0.868
MA0153.1	MA0153.1	0.0468
MA0154.1	MA0154.1	0.00347
MA0155.1	MA0155.1	0.592
MA0156.1	MA0156.1	0.716
MA0157.1	MA0157.1	0.933
MA0159.1	MA0159.1	0.00581
MA0160.1	MA0160.1	0.0997
MA0162.1	MA0162.1	0.326
MA0163.1	MA0163.1	1.56635e-11
MA0164.1	MA0164.1	0.813
MA0258.1	MA0258.1	0.0018
MA0259.1	MA0259.1	0.859

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13639

Novel motif	Logo	P-value
1	1	0.0333
10	10	0.0272
100	100	0.576
101	101	0.253
102	102	0.792
103	103	0.0864
104	104	0.686
105	105	0.901
106	106	0.0154
107	107	0.0672
108	108	0.432
109	109	0.131
11	11	0.0639
110	110	0.108
111	111	0.00135
112	112	0.0227
113	113	0.874
114	114	0.00282
115	115	0.458
116	116	0.424
117	117	0.121
118	118	0.317
119	119	0.0306
12	12	0.911
120	120	0.863
121	121	0.286
122	122	0.579
123	123	0.077
124	124	0.306
125	125	0.0143
126	126	0.539
127	127	0.219
128	128	0.0415
129	129	0.345
13	13	0.129
130	130	0.135
131	131	0.494
132	132	0.806
133	133	0.552
134	134	0.777
135	135	0.19
136	136	0.908
137	137	0.0994
138	138	0.542
139	139	0.0279
14	14	0.574
140	140	0.0872
141	141	0.439
142	142	0.767
143	143	0.184
144	144	0.371
145	145	0.125
146	146	0.792
147	147	0.899
148	148	0.00577
149	149	0.213
15	15	0.072
150	150	0.475
151	151	0.438
152	152	0.325
153	153	0.835
154	154	0.69
155	155	0.13
156	156	0.651
157	157	0.584
158	158	0.474
159	159	0.804
16	16	0.135
160	160	0.0935
161	161	0.406
162	162	0.387
163	163	0.809
164	164	0.217
165	165	0.116
166	166	0.807
167	167	0.0267
168	168	0.507
169	169	0.004
17	17	0.138
18	18	0.0991
19	19	0.149
2	2	0.855
20	20	0.839
21	21	0.262
22	22	0.295
23	23	0.169
24	24	0.485
25	25	0.703
26	26	0.0156
27	27	0.232
28	28	0.874
29	29	0.288
3	3	0.054
30	30	0.459
31	31	0.595
32	32	0.128
33	33	0.396
34	34	0.648
35	35	0.115
36	36	0.0317
37	37	0.133
38	38	0.207
39	39	0.426
4	4	0.743
40	40	0.243
41	41	0.485
42	42	0.527
43	43	0.0882
44	44	0.0231
45	45	0.821
46	46	0.0371
47	47	0.175
48	48	0.223
49	49	0.131
5	5	0.379
50	50	0.99
51	51	0.447
52	52	0.374
53	53	0.614
54	54	0.43
55	55	0.161
56	56	0.553
57	57	0.212
58	58	0.235
59	59	0.118
6	6	0.293
60	60	0.0894
61	61	0.356
62	62	0.0924
63	63	0.207
64	64	0.18
65	65	0.0914
66	66	0.65
67	67	0.234
68	68	0.721
69	69	0.353
7	7	0.414
70	70	0.00913
71	71	0.0448
72	72	0.325
73	73	0.209
74	74	0.517
75	75	0.111
76	76	0.451
77	77	0.171
78	78	0.148
79	79	0.00175
8	8	0.0356
80	80	0.781
81	81	0.138
82	82	0.0841
83	83	0.989
84	84	0.771
85	85	0.00586
86	86	0.225
87	87	0.652
88	88	0.774
89	89	0.0495
9	9	0.439
90	90	0.054
91	91	0.373
92	92	0.0829
93	93	0.396
94	94	0.0245
95	95	0.267
96	96	0.076
97	97	0.994
98	98	0.116
99	99	0.978

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13639

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011215 human Monocyte-derived macrophages 0h after udorn influenza infection sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0000255 (eukaryotic cell)
0000235 (macrophage)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000357 (0 hr sample)
0000086 (human macrophage sample)
0000647 (udorn influenza infection sample)
0011215 (human Monocyte-derived macrophages 0h after udorn influenza infection sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
 |DRA_sample_Accession=CAGE@SAMD00005727
-|accession_numbers=CAGE;DRX008599;DRR009471;DRZ000896;DRZ002281
+|accession_numbers=CAGE;DRX008599;DRR009471;DRZ000896;DRZ002281;DRZ012246;DRZ013631
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0000255,CL:0000235
@@ Line 14: / Line 14: @@
 |donor= donor4 (227_121:Ud_0h)
 |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!2.65!446.97!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.56!362.63!SPI1;;chr12:54778471..54778528,-!p1@ZNF385A!2.40!250.89!ZNF385A;;chr16:85932760..85932775,+!p1@IRF8!2.17!147.58!IRF8;;chr10:64576105..64576133,-!p1@EGR2!2.12!261.43!EGR2;;chr7:115670804..115670825,-!p1@TFEC!2.05!111.74!TFEC;;chr11:47279504..47279563,+!p1@NR1H3!1.96!196.08!NR1H3;;chr20:39317868..39317884,-!p1@MAFB!1.93!925.56!MAFB;;chr11:47400062..47400077,-!p2@SPI1!1.82!65.36!SPI1;;chr7:128577972..128578047,+!p1@IRF5!1.67!71.68!IRF5;;chr10:51572408..51572454,+!p3@NCOA4!1.66!250.89!NCOA4;;chr19:33793430..33793447,-!p1@CEBPA!1.62!166.56!CEBPA;;chr3:12330560..12330579,+!p1@PPARG!1.60!44.28!PPARG;;chr11:47399996..47400014,-!p4@SPI1!1.45!27.41!SPI1;;chr7:137620650..137620677,-!p3@CREB3L2!1.42!25.30!CREB3L2;;chr7:137620684..137620711,-!p4@CREB3L2!1.42!25.30!CREB3L2;;chr14:75988771..75988826,+!p1@BATF!1.40!31.63!BATF;;chr19:50432132..50432217,+!p2@ATF5!1.35!25.30!ATF5;;chr10:31288398..31288455,-!p2@ZNF438!1.32!23.19!ZNF438;;chr7:50344289..50344323,+!p1@IKZF1!1.30!18.98!IKZF1;;chr12:26277956..26277980,-!p1@BHLHE41!1.29!65.36!BHLHE41;;chr12:26277929..26277955,-!p3@BHLHE41!1.28!25.30!BHLHE41;;chr12:26277817..26277863,-!p2@BHLHE41!1.26!23.19!BHLHE41;;chr11:47400032..47400043,-!p5@SPI1!1.25!16.87!SPI1;;chr2:68592394..68592405,+!p2@PLEK!1.25!16.87!PLEK;;chr2:145277640..145277771,-!p1@ZEB2!1.23!210.83!ZEB2;;chr11:47400045..47400060,-!p6@SPI1!1.20!14.76!SPI1;;chr1:78050720..78050734,-!p9@ZZZ3!1.20!14.76!ZZZ3;;chr7:128582226..128582238,+!p7@IRF5!1.20!14.76!IRF5;;chr2:70142232..70142251,+!p1@MXD1!1.19!80.12!MXD1;;chr20:48809000..48809053,+!p12@CEBPB!1.19!18.98!CEBPB;;chr3:69788576..69788648,+!p1@MITF!1.18!73.79!MITF;;chr6:144385698..144385742,-!p2@PLAGL1!1.17!16.87!PLAGL1;;chr12:12764995..12765017,+!p3@CREBL2!1.16!18.98!CREBL2;;chr11:47279568..47279577,+!p8@NR1H3!1.14!12.65!NR1H3;;chr11:47399947..47399961,-!p3@SPI1!1.14!12.65!SPI1;;chr6:41691289..41691312,-!p9@TFEB!1.14!12.65!TFEB;;chr10:51572339..51572376,+!p4@NCOA4!1.12!27.41!NCOA4;;chr5:137804405..137804444,+!p3@EGR1!1.12!14.76!EGR1;;chr6:106534192..106534224,+!p1@PRDM1!1.11!33.73!PRDM1;;chr2:70167296..70167306,+!p3@MXD1!1.08!16.87!MXD1;;chr16:79634624..79634642,-!p1@MAF!1.07!42.17!MAF;;chr22:38597987..38598021,+!p2@MAFF!1.06!65.36!MAFF;;chr5:137804484..137804498,+!p2@EGR1!1.06!42.17!EGR1;;chr7:50343634..50343717,+!p2@IKZF1!1.06!10.54!IKZF1;;chr2:46612891..46612907,+!p10@EPAS1!1.06!10.54!EPAS1;;chr10:31288370..31288393,-!p3@ZNF438!1.06!10.54!ZNF438;;chr14:35872962..35873025,-!p3@NFKBIA!1.04!25.30!NFKBIA;;chr19:42636586..42636607,-!p1@POU2F2!1.03!27.41!POU2F2;;chr2:145277882..145277967,-!p3@ZEB2!1.03!16.87!ZEB2;;chr14:89628064..89628109,-!p4@FOXN3!1.00!18.98!FOXN3;;chr4:185395633..185395651,-!p2@IRF2!1.00!14.76!IRF2;;chr20:48807456..48807475,+!p3@CEBPB!0.98!16.87!CEBPB;;chr1:212782094..212782109,+!p1@ATF3!0.97!231.92!ATF3;;chr13:41593425..41593480,-!p1@ELF1!0.97!54.82!ELF1;;chr10:64575812..64575824,-!p4@EGR2!0.97!8.43!EGR2;;chr19:54041669..54041697,+!p2@ZNF331!0.97!8.43!ZNF331;;chr1:43162358..43162369,+!p11@YBX1!0.97!8.43!YBX1;;chr2:70166499..70166536,+!p6@MXD1!0.97!8.43!MXD1;;chr5:71803177..71803255,-!p1@ZNF366!0.97!8.43!ZNF366;;chr8:102216978..102217003,-!p4@ZNF706!0.97!8.43!ZNF706;;chr16:31885093..31885165,+!p1@ZNF267!0.96!128.61!ZNF267;;chr9:102584159..102584174,+!p2@NR4A3!0.96!14.76!NR4A3;;chr16:79634595..79634620,-!p2@MAF!0.95!14.76!MAF;;chr7:27835758..27835772,+!p3@TAX1BP1!0.94!10.54!TAX1BP1;;chr15:42743341..42743377,-!p3@ZFP106!0.92!12.65!ZFP106;;chr8:72756063..72756125,-!p1@MSC!0.91!14.76!MSC;;chr19:35759976..35760042,+!p4@USF2!0.90!37.95!USF2;;chr7:137563945..137564001,-!p6@CREB3L2!0.89!16.87!CREB3L2;;chr14:62203595..62203676,+!p4@HIF1A!0.88!12.65!HIF1A;;chr6:44233252..44233296,-!p1@NFKBIE!0.87!67.47!NFKBIE;;chr17:40440481..40440550,+!p1@STAT5A!0.87!48.49!STAT5A;;chr6:42419514..42419606,-!p1@TRERF1!0.87!14.76!TRERF1;;chr18:51750414..51750449,-!p5@MBD2!0.87!12.65!MBD2;;chr14:62213758..62213774,+!p8@HIF1A!0.87!8.43!HIF1A;;chr2:113057415..113057477,+!p3@ZC3H6!0.87!8.43!ZC3H6;;chr19:13213704..13213726,-!p3@LYL1!0.86!8.43!LYL1;;chr19:13213954..13214021,-!p4@LYL1!0.86!6.33!LYL1;;chr2:113994526..113994556,-!p3@PAX8!0.86!6.33!PAX8;;chr2:113999360..113999386,-!p4@PAX8!0.86!6.33!PAX8;;chr2:70166128..70166141,+!p9@MXD1!0.86!6.33!MXD1;;chr2:70166156..70166179,+!p4@MXD1!0.86!6.33!MXD1;;chr3:185784049..185784050,-!p7@ETV5!0.86!6.33!ETV5;;chr10:51585449..51585487,+!p6@NCOA4!0.86!6.33!NCOA4;;chr13:41593392..41593403,-!p7@ELF1!0.86!6.33!ELF1;;chr13:46543936..46543949,-!p19@ZC3H13!0.86!6.33!ZC3H13;;chr19:35759824..35759891,+!p1@USF2!0.85!200.29!USF2;;chr11:128563948..128564003,+!p1@FLI1!0.85!78.01!FLI1;;chr4:106156933..106156947,+!p3@TET2!0.85!8.43!TET2;;chr4:87967906..87967931,+!p15@AFF1!0.85!8.43!AFF1;;chr4:87967965..87967983,+!p16@AFF1!0.84!8.43!AFF1;;chr14:62213827..62213853,+!p6@HIF1A!0.83!8.43!HIF1A;;chr10:3827371..3827386,-!p2@KLF6!0.82!50.60!KLF6;;chr7:149470641..149470694,-!p1@ZNF467!0.82!27.41!ZNF467;;chr8:22550982..22550999,-!p1@EGR3!0.82!16.87!EGR3;;chr14:35872453..35872485,-!p2@NFKBIA!0.82!14.76!NFKBIA;;chr4:87857433..87857472,+!p9@AFF1!0.82!10.54!AFF1;;chr18:51690935..51690957,-!p8@MBD2!0.82!8.43!MBD2;;chr14:64971438..64971450,+!p2@ZBTB1!0.79!12.65!ZBTB1;;chr2:46602879..46602899,+!p8@EPAS1!0.79!6.33!EPAS1;;chr14:58817788..58817805,+!p5@ARID4A!0.78!6.33!ARID4A;;chr14:74206359..74206374,-!p8@C14orf43!0.78!6.33!C14orf43;;chr12:52445218..52445237,+!p1@NR4A1!0.77!67.47!NR4A1;;chr20:48807615..48807644,+!p6@CEBPB!0.77!8.43!CEBPB;;chr17:40440225..40440268,+!p3@STAT5A!0.77!6.33!STAT5A;;chr3:129158696..129158703,-!p4@MBD4!0.77!6.33!MBD4;;chr3:48282587..48282603,+!p1@ZNF589!0.76!23.19!ZNF589;;chr14:75746722..75746777,+!p2@FOS!0.76!6.33!FOS;;chr8:72756213..72756243,-!p5@MSC!0.76!6.33!MSC;;chr2:208031943..208031978,-!p5@KLF7!0.75!6.33!KLF7;;chr10:3819310..3819325,-!p5@KLF6!0.75!6.33!KLF6;;chr9:102584262..102584276,+!p1@NR4A3!0.73!10.54!NR4A3;;chr16:68119324..68119364,+!p1@NFATC3!0.72!21.08!NFATC3;;chr3:12329397..12329433,+!p2@PPARG!0.72!10.54!PPARG;;chr14:62193465..62193490,+!p7@HIF1A!0.72!6.33!HIF1A;;chr10:31288329..31288353,-!p7@ZNF438!0.72!4.22!ZNF438;;chr10:60144869..60144887,+!p3@TFAM!0.72!4.22!TFAM;;chr10:64576035..64576046,-!p2@EGR2!0.72!4.22!EGR2;;chr11:47399920..47399931,-!p7@SPI1!0.72!4.22!SPI1;;chr13:41593405..41593416,-!p9@ELF1!0.72!4.22!ELF1;;chr22:38609570..38609585,+!p6@MAFF!0.72!4.22!MAFF;;chr2:113057501..113057529,+!p4@ZC3H6!0.72!4.22!ZC3H6;;chr2:145147310..145147339,-!p20@ZEB2!0.72!4.22!ZEB2;;chr2:145277575..145277580,-!p22@ZEB2!0.72!4.22!ZEB2;;chr2:145277589..145277612,-!p12@ZEB2!0.72!4.22!ZEB2;;chr2:185463158..185463181,+!p2@ZNF804A!0.72!4.22!ZNF804A;;chr3:114343870..114343887,-!p9@ZBTB20!0.72!4.22!ZBTB20;;chr3:12392932..12392962,+!p8@PPARG!0.72!4.22!PPARG;;chr4:103498623..103498650,+!p9@NFKB1!0.72!4.22!NFKB1;;chr14:75988831..75988847,+!p2@BATF!0.72!4.22!BATF;;chr16:51185573..51185593,-!p3@SALL1!0.72!4.22!SALL1;;chr16:79633682..79633694,-!p12@MAF!0.72!4.22!MAF;;chr16:79634464..79634493,-!p5@MAF!0.72!4.22!MAF;;chr17:36871943..36871947,+!p8@MLLT6!0.72!4.22!MLLT6;;chr19:35760750..35760764,+!p16@USF2!0.72!4.22!USF2;;chr19:54058073..54058088,+!p1@ZNF331!0.72!4.22!ZNF331;;chr1:244219392..244219409,+!p5@ZNF238!0.72!4.22!ZNF238;;chr1:25256439..25256476,-!p3@RUNX3!0.72!4.22!RUNX3;;chr20:3321190..3321215,-!p7@C20orf194!0.72!4.22!C20orf194;;chr21:30672433..30672464,+!p6@BACH1!0.72!4.22!BACH1;;chr6:41673552..41673571,-!p10@TFEB!0.72!4.22!TFEB;;chr6:44233244..44233248,-!p3@NFKBIE!0.72!4.22!NFKBIE;;chr7:111846692..111846704,+!p3@ZNF277!0.72!4.22!ZNF277;;chr7:115670792..115670797,-!p2@TFEC!0.72!4.22!TFEC;;chr7:128578070..128578077,+!p3@IRF5!0.72!4.22!IRF5;;chrX:129244430..129244442,-!p5@ELF4!0.72!4.22!ELF4;;chr2:85197924..85197955,+!p3@KCMF1!0.71!16.87!KCMF1;;chr13:46543725..46543747,-!p2@ZC3H13!0.71!8.43!ZC3H13;;chr19:12203069..12203094,+!p2@ZNF788!0.71!6.33!ZNF788;;chr8:72756267..72756296,-!p4@MSC!0.71!6.33!MSC;;chr19:45971246..45971265,+!p1@FOSB!0.70!84.33!FOSB;;chr9:137217986..137218049,+!p3@RXRA!0.70!12.65!RXRA;;chr12:53848549..53848582,+!p9@PCBP2!0.70!6.33!PCBP2;;chr7:100076744..100076749,-!p8@TSC22D4!0.69!4.22!TSC22D4;;chr14:35873947..35873965,-!p1@NFKBIA!0.68!280.41!NFKBIA;;chr12:53774567..53774658,+!p2@SP1!0.68!21.08!SP1;;chr6:106534230..106534254,+!p2@PRDM1!0.68!10.54!PRDM1;;chr13:27998831..27998851,+!p2@GTF3A!0.67!25.30!GTF3A;;chr12:56575310..56575344,-!p3@SMARCC2!0.67!6.33!SMARCC2;;chr1:235344971..235344985,-!p5@ARID4B!0.67!4.22!ARID4B;;chr15:42783229..42783234,-!p8@ZFP106!0.67!4.22!ZFP106;;chr5:88178983..88179012,-!p1@MEF2C!0.66!31.63!MEF2C;;chr18:77160282..77160343,+!p2@NFATC1!0.66!25.30!NFATC1;;chrX:131623044..131623089,-!p1@MBNL3!0.66!16.87!MBNL3;;chr5:321810..321877,+!p1@AHRR!0.66!12.65!AHRR;;chr14:75745523..75745537,+!p1@FOS!0.65!487.03!FOS;;chr18:45456800..45456886,-!p4@SMAD2!0.65!14.76!SMAD2;;chr19:11877805..11877832,+!p2@ZNF441!0.65!6.33!ZNF441;;chr5:139494712..139494759,+!p5@PURA!0.65!6.33!PURA;;chr16:88752889..88752921,-!p1@SNAI3!0.65!4.22!SNAI3;;chr2:145275162..145275202,-!p2@ZEB2!0.64!23.19!ZEB2;;chr2:238600933..238600985,+!p3@LRRFIP1!0.64!21.08!LRRFIP1;;chr7:137564014..137564042,-!p8@CREB3L2!0.64!6.33!CREB3L2;;chr1:35656352..35656383,-!p7@SFPQ!0.64!6.33!SFPQ;;chr8:71316403..71316427,-!p6@NCOA2!0.64!4.22!NCOA2;;chr11:47235980..47236028,+!p3@DDB2!0.63!8.43!DDB2;;chr10:22022947..22022965,+!p7@MLLT10!0.63!4.22!MLLT10;;chr4:106155658..106155662,+!p5@TET2!0.63!4.22!TET2;;chr4:87856129..87856186,+!p1@AFF1!0.62!52.71!AFF1;;chr1:249132556..249132573,+!p3@ZNF672!0.62!10.54!ZNF672;;chr16:73092791..73092831,-!p4@ZFHX3!0.62!6.33!ZFHX3;;chr2:61108808..61108821,+!p3@REL!0.62!4.22!REL;;chr2:61108695..61108753,+!p1@REL!0.61!25.30!REL;;chr19:58694742..58694800,+!p2@ZNF274!0.61!14.76!ZNF274;;chr1:25256756..25256774,-!p1@RUNX3!0.61!6.33!RUNX3;;chr2:28616604..28616615,+!p6@FOSL2!0.61!4.22!FOSL2;;chr2:60780607..60780624,-!p2@BCL11A!0.60!10.54!BC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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000235;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
 |ffid_belonging_in_development=CL:0000049,CL:0000134
 |fonse_cell_line=
@@ Line 42: / Line 43: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Monocyte-derived%2520macrophages%2520response%2520to%2520udorn%2520influenza%2520infection%252c%252000hr00min%252c%2520donor4%2520%2528227_121%253aUd_0h%2529.CNhs13639.13311-142I8.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Monocyte-derived%2520macrophages%2520response%2520to%2520udorn%2520influenza%2520infection%252c%252000hr00min%252c%2520donor4%2520%2528227_121%253aUd_0h%2529.CNhs13639.13311-142I8.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Monocyte-derived%2520macrophages%2520response%2520to%2520udorn%2520influenza%2520infection%252c%252000hr00min%252c%2520donor4%2520%2528227_121%253aUd_0h%2529.CNhs13639.13311-142I8.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/Monocyte-derived%2520macrophages%2520response%2520to%2520udorn%2520influenza%2520infection%252c%252000hr00min%252c%2520donor4%2520%2528227_121%253aUd_0h%2529.CNhs13639.13311-142I8.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/Monocyte-derived%2520macrophages%2520response%2520to%2520udorn%2520influenza%2520infection%252c%252000hr00min%252c%2520donor4%2520%2528227_121%253aUd_0h%2529.CNhs13639.13311-142I8.hg38.nobarcode.ctss.bed.gz
 |id=FF:13311-142I8
 |is_a=EFO:0002091;;FF:0011215
@@ Line 47: / Line 53: @@
 |library_id=CNhs13639
 |library_id_phase_based=2:CNhs13639
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;13311
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;13311
 |name=Monocyte-derived macrophages response to udorn influenza infection
 |namespace=
@@ Line 54: / Line 64: @@
 |profile_rnaseq=
 |profile_srnaseq=
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:13311-142I8;search_select_hide=table117:FF:13311-142I8
 }}

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FF:13311-142I8: Difference between revisions

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Latest revision as of 18:56, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0