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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005694
|DRA_sample_Accession=CAGE@SAMD00005694
|accession_numbers=CAGE;DRX008525;DRR009397;DRZ000822;DRZ002207
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005694
|accession_numbers=CAGE;DRX008525;DRR009397;DRZ000822;DRZ002207;DRZ012172;DRZ013557
|accession_numbers_RNASeq=sRNA-Seq;DRX037219;DRR041585;DRZ007227
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000483,UBERON:0005910,UBERON:0000479,UBERON:0004119,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0005911,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000486,UBERON:0010317,UBERON:0000365,UBERON:0001008
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000483,UBERON:0005910,UBERON:0000479,UBERON:0004119,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0005911,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000486,UBERON:0010317,UBERON:0000365,UBERON:0001008
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0000244,CL:0000731
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0000244,CL:0000731
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|library_id=CNhs11334
|library_id=CNhs11334
|library_id_phase_based=2:CNhs11334
|library_id_phase_based=2:CNhs11334
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11520
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10013.GTCCGC.11520
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11520
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10013.GTCCGC.11520
|name=Urothelial Cells, donor1
|name=Urothelial Cells, donor1
|namespace=FANTOM5
|namespace=FANTOM5
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|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=SRhi10013,,,
|profile_srnaseq=SRhi10013,,,
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 73: Line 81:
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|sample_category=primary cells
Line 96: Line 105:
|top_motifs=TP53:2.92766664794;TBX4,5:2.14787395113;TFCP2:1.78729334048;HAND1,2:1.73473706701;ZNF148:1.72286400841;VSX1,2:1.70954152831;ADNP_IRX_SIX_ZHX:1.68361155326;ZEB1:1.6075912199;ZNF423:1.33442976835;SNAI1..3:1.30800104662;MYOD1:1.26964668637;PPARG:1.24891900165;XCPE1{core}:1.16555155208;NR5A1,2:1.15028947271;EBF1:1.09296951812;GTF2A1,2:0.984729567183;ZIC1..3:0.969448632611;TEAD1:0.961182673463;ZNF238:0.941475952726;NKX2-3_NKX2-5:0.883495429639;GLI1..3:0.871996248605;TBP:0.864278666755;SP1:0.743555234635;LMO2:0.742529967072;SPZ1:0.73338705947;TFAP2{A,C}:0.719365974805;GZF1:0.701516664865;TLX1..3_NFIC{dimer}:0.697869454378;SMAD1..7,9:0.691225219084;TEF:0.649528304031;MTF1:0.597081091665;FOS_FOS{B,L1}_JUN{B,D}:0.573388569881;FOXM1:0.534469546805;PAX1,9:0.531678840365;STAT5{A,B}:0.527349253936;ONECUT1,2:0.512327911377;LHX3,4:0.484407949562;FOSL2:0.4693517101;ZBTB6:0.467910795889;BACH2:0.46218594672;HMX1:0.396895978508;POU6F1:0.379257547656;RXRA_VDR{dimer}:0.379190882875;POU2F1..3:0.376383914277;RREB1:0.376151898735;SOX2:0.367066937299;NANOG:0.345657145174;GFI1B:0.318985586262;bHLH_family:0.30464226168;TFAP4:0.269267464367;CEBPA,B_DDIT3:0.249015554986;HOX{A5,B5}:0.245035886753;ESR1:0.219644444654;RXR{A,B,G}:0.204604308421;MAZ:0.203578667153;POU1F1:0.201023909878;HIF1A:0.199726577139;GATA6:0.191254760127;EP300:0.183067507381;NR3C1:0.168733485848;SOX17:0.15957804414;NR1H4:0.147265012694;NKX3-2:0.126026322755;FOXQ1:0.123690160358;HNF1A:0.0972295035351;HNF4A_NR2F1,2:0.0838743547797;HLF:0.0776581570021;HOX{A6,A7,B6,B7}:0.0774675821361;NFIL3:0.0638232436401;NFE2:0.0350823233759;TFAP2B:0.0318980123334;REST:0.0289969713629;KLF4:0.013600240271;AR:0.0130297664115;CRX:0.0106957916566;NFKB1_REL_RELA:0.00556687125557;FOXL1:-0.0025309639502;IRF7:-0.00847729462109;SRF:-0.0359248684826;IKZF1:-0.0579675036694;LEF1_TCF7_TCF7L1,2:-0.0847642710357;NR6A1:-0.0873156247957;HES1:-0.0908116619616;HIC1:-0.0948039683273;UFEwm:-0.0966389345755;OCT4_SOX2{dimer}:-0.118544909475;HSF1,2:-0.126247388342;ETS1,2:-0.141786652644;JUN:-0.142961129521;GTF2I:-0.192347136411;T:-0.194747115519;MED-1{core}:-0.197679449988;ESRRA:-0.197990021456;SOX{8,9,10}:-0.198906372127;PAX8:-0.215828692519;PDX1:-0.217267590679;PAX5:-0.221381147487;ARID5B:-0.221722184882;PITX1..3:-0.222856001944;MEF2{A,B,C,D}:-0.235614022938;NFE2L2:-0.25407039635;PBX1:-0.255034722097;TOPORS:-0.276646715343;NFE2L1:-0.285490128561;POU3F1..4:-0.287884201161;TLX2:-0.298144401292;RORA:-0.312500009362;FOX{F1,F2,J1}:-0.312590706291;CDC5L:-0.312767486406;ATF6:-0.330764243985;NKX2-2,8:-0.348896433767;RUNX1..3:-0.360027902018;PAX4:-0.367510809172;HOX{A4,D4}:-0.395325200525;SPIB:-0.403849825927;NHLH1,2:-0.408032822958;STAT2,4,6:-0.415764424916;EVI1:-0.416151995134;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.463771872041;POU5F1:-0.501840354813;ATF2:-0.514965536467;DBP:-0.534467718478;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.539169315974;RFX1:-0.542806468609;CUX2:-0.549553288467;IRF1,2:-0.563598801144;HMGA1,2:-0.579316920237;ZNF384:-0.58495124757;GCM1,2:-0.587743725507;TFDP1:-0.595827648167;FOXA2:-0.611876198872;MYBL2:-0.637062404007;SPI1:-0.640531349829;PATZ1:-0.642491402793;MTE{core}:-0.66286029608;PAX2:-0.662904515287;ZFP161:-0.666494373236;NFIX:-0.680090090852;AIRE:-0.682342614348;SOX5:-0.706584740571;ELK1,4_GABP{A,B1}:-0.753328272192;NFY{A,B,C}:-0.755383182505;NKX6-1,2:-0.762441588573;PRDM1:-0.77340794759;MYB:-0.776873510118;ZNF143:-0.788220148098;NFATC1..3:-0.817379413733;MYFfamily:-0.863754830111;MAFB:-0.864071206372;RFX2..5_RFXANK_RFXAP:-0.897618621271;EGR1..3:-0.90985477624;GFI1:-0.920552302824;PRRX1,2:-0.932262633803;HBP1_HMGB_SSRP1_UBTF:-0.933146673898;NKX3-1:-0.939299480992;MZF1:-0.983727897265;ATF5_CREB3:-0.992523537908;EN1,2:-0.995644622155;ALX4:-1.0030109098;ELF1,2,4:-1.01998438943;E2F1..5:-1.02147948532;FOXO1,3,4:-1.0283399315;FOX{I1,J2}:-1.03499896234;FOXP3:-1.04913387015;FOX{D1,D2}:-1.04995898858;NKX2-1,4:-1.05745141209;HOXA9_MEIS1:-1.05759200198;RBPJ:-1.06291163854;XBP1:-1.12507970754;TAL1_TCF{3,4,12}:-1.13173517781;DMAP1_NCOR{1,2}_SMARC:-1.14061525006;TGIF1:-1.16205581302;FOXP1:-1.18479344537;NRF1:-1.19151121959;FOXN1:-1.20067054172;ALX1:-1.22979177554;BPTF:-1.24358999038;PAX3,7:-1.24906298276;YY1:-1.31342009824;ATF4:-1.35810719612;ZBTB16:-1.36725592211;CDX1,2,4:-1.36793989598;IKZF2:-1.41477899141;CREB1:-1.4293288619;PAX6:-1.46990120883;BREu{core}:-1.49691291987;FOXD3:-1.53252970798;AHR_ARNT_ARNT2:-1.60047583924;GATA4:-1.6538167813;NANOG{mouse}:-1.66418391186;SREBF1,2:-1.74355121069;STAT1,3:-1.84284932574
|top_motifs=TP53:2.92766664794;TBX4,5:2.14787395113;TFCP2:1.78729334048;HAND1,2:1.73473706701;ZNF148:1.72286400841;VSX1,2:1.70954152831;ADNP_IRX_SIX_ZHX:1.68361155326;ZEB1:1.6075912199;ZNF423:1.33442976835;SNAI1..3:1.30800104662;MYOD1:1.26964668637;PPARG:1.24891900165;XCPE1{core}:1.16555155208;NR5A1,2:1.15028947271;EBF1:1.09296951812;GTF2A1,2:0.984729567183;ZIC1..3:0.969448632611;TEAD1:0.961182673463;ZNF238:0.941475952726;NKX2-3_NKX2-5:0.883495429639;GLI1..3:0.871996248605;TBP:0.864278666755;SP1:0.743555234635;LMO2:0.742529967072;SPZ1:0.73338705947;TFAP2{A,C}:0.719365974805;GZF1:0.701516664865;TLX1..3_NFIC{dimer}:0.697869454378;SMAD1..7,9:0.691225219084;TEF:0.649528304031;MTF1:0.597081091665;FOS_FOS{B,L1}_JUN{B,D}:0.573388569881;FOXM1:0.534469546805;PAX1,9:0.531678840365;STAT5{A,B}:0.527349253936;ONECUT1,2:0.512327911377;LHX3,4:0.484407949562;FOSL2:0.4693517101;ZBTB6:0.467910795889;BACH2:0.46218594672;HMX1:0.396895978508;POU6F1:0.379257547656;RXRA_VDR{dimer}:0.379190882875;POU2F1..3:0.376383914277;RREB1:0.376151898735;SOX2:0.367066937299;NANOG:0.345657145174;GFI1B:0.318985586262;bHLH_family:0.30464226168;TFAP4:0.269267464367;CEBPA,B_DDIT3:0.249015554986;HOX{A5,B5}:0.245035886753;ESR1:0.219644444654;RXR{A,B,G}:0.204604308421;MAZ:0.203578667153;POU1F1:0.201023909878;HIF1A:0.199726577139;GATA6:0.191254760127;EP300:0.183067507381;NR3C1:0.168733485848;SOX17:0.15957804414;NR1H4:0.147265012694;NKX3-2:0.126026322755;FOXQ1:0.123690160358;HNF1A:0.0972295035351;HNF4A_NR2F1,2:0.0838743547797;HLF:0.0776581570021;HOX{A6,A7,B6,B7}:0.0774675821361;NFIL3:0.0638232436401;NFE2:0.0350823233759;TFAP2B:0.0318980123334;REST:0.0289969713629;KLF4:0.013600240271;AR:0.0130297664115;CRX:0.0106957916566;NFKB1_REL_RELA:0.00556687125557;FOXL1:-0.0025309639502;IRF7:-0.00847729462109;SRF:-0.0359248684826;IKZF1:-0.0579675036694;LEF1_TCF7_TCF7L1,2:-0.0847642710357;NR6A1:-0.0873156247957;HES1:-0.0908116619616;HIC1:-0.0948039683273;UFEwm:-0.0966389345755;OCT4_SOX2{dimer}:-0.118544909475;HSF1,2:-0.126247388342;ETS1,2:-0.141786652644;JUN:-0.142961129521;GTF2I:-0.192347136411;T:-0.194747115519;MED-1{core}:-0.197679449988;ESRRA:-0.197990021456;SOX{8,9,10}:-0.198906372127;PAX8:-0.215828692519;PDX1:-0.217267590679;PAX5:-0.221381147487;ARID5B:-0.221722184882;PITX1..3:-0.222856001944;MEF2{A,B,C,D}:-0.235614022938;NFE2L2:-0.25407039635;PBX1:-0.255034722097;TOPORS:-0.276646715343;NFE2L1:-0.285490128561;POU3F1..4:-0.287884201161;TLX2:-0.298144401292;RORA:-0.312500009362;FOX{F1,F2,J1}:-0.312590706291;CDC5L:-0.312767486406;ATF6:-0.330764243985;NKX2-2,8:-0.348896433767;RUNX1..3:-0.360027902018;PAX4:-0.367510809172;HOX{A4,D4}:-0.395325200525;SPIB:-0.403849825927;NHLH1,2:-0.408032822958;STAT2,4,6:-0.415764424916;EVI1:-0.416151995134;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.463771872041;POU5F1:-0.501840354813;ATF2:-0.514965536467;DBP:-0.534467718478;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.539169315974;RFX1:-0.542806468609;CUX2:-0.549553288467;IRF1,2:-0.563598801144;HMGA1,2:-0.579316920237;ZNF384:-0.58495124757;GCM1,2:-0.587743725507;TFDP1:-0.595827648167;FOXA2:-0.611876198872;MYBL2:-0.637062404007;SPI1:-0.640531349829;PATZ1:-0.642491402793;MTE{core}:-0.66286029608;PAX2:-0.662904515287;ZFP161:-0.666494373236;NFIX:-0.680090090852;AIRE:-0.682342614348;SOX5:-0.706584740571;ELK1,4_GABP{A,B1}:-0.753328272192;NFY{A,B,C}:-0.755383182505;NKX6-1,2:-0.762441588573;PRDM1:-0.77340794759;MYB:-0.776873510118;ZNF143:-0.788220148098;NFATC1..3:-0.817379413733;MYFfamily:-0.863754830111;MAFB:-0.864071206372;RFX2..5_RFXANK_RFXAP:-0.897618621271;EGR1..3:-0.90985477624;GFI1:-0.920552302824;PRRX1,2:-0.932262633803;HBP1_HMGB_SSRP1_UBTF:-0.933146673898;NKX3-1:-0.939299480992;MZF1:-0.983727897265;ATF5_CREB3:-0.992523537908;EN1,2:-0.995644622155;ALX4:-1.0030109098;ELF1,2,4:-1.01998438943;E2F1..5:-1.02147948532;FOXO1,3,4:-1.0283399315;FOX{I1,J2}:-1.03499896234;FOXP3:-1.04913387015;FOX{D1,D2}:-1.04995898858;NKX2-1,4:-1.05745141209;HOXA9_MEIS1:-1.05759200198;RBPJ:-1.06291163854;XBP1:-1.12507970754;TAL1_TCF{3,4,12}:-1.13173517781;DMAP1_NCOR{1,2}_SMARC:-1.14061525006;TGIF1:-1.16205581302;FOXP1:-1.18479344537;NRF1:-1.19151121959;FOXN1:-1.20067054172;ALX1:-1.22979177554;BPTF:-1.24358999038;PAX3,7:-1.24906298276;YY1:-1.31342009824;ATF4:-1.35810719612;ZBTB16:-1.36725592211;CDX1,2,4:-1.36793989598;IKZF2:-1.41477899141;CREB1:-1.4293288619;PAX6:-1.46990120883;BREu{core}:-1.49691291987;FOXD3:-1.53252970798;AHR_ARNT_ARNT2:-1.60047583924;GATA4:-1.6538167813;NANOG{mouse}:-1.66418391186;SREBF1,2:-1.74355121069;STAT1,3:-1.84284932574
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11520-119H8;search_select_hide=table117:FF:11520-119H8
}}
}}

Latest revision as of 18:06, 4 June 2020

Name:Urothelial Cells, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11334
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuebladder
dev stageNA
sexNA
ageNA
cell typeurothelial cell
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberlot:4494
catalog numberSC4325
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005694
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11334 CAGE DRX008525 DRR009397
Accession ID Hg19

Library idBAMCTSS
CNhs11334 DRZ000822 DRZ002207
Accession ID Hg38

Library idBAMCTSS
CNhs11334 DRZ012172 DRZ013557
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005694
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10013.GTCCGC sRNA-Seq DRX037219 DRR041585
Accession ID Hg19

Library idBAMCTSS
SRhi10013.GTCCGC DRZ007227


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0861
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.315
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.499
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.36
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.00573
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.455
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.00381
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0983
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0.27
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.115
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal1.318
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.196
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.00331
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0.604
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.0526
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.36
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.604
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11334

Jaspar motifP-value
MA0002.20.291
MA0003.10.331
MA0004.10.602
MA0006.10.168
MA0007.10.335
MA0009.10.231
MA0014.10.784
MA0017.10.0745
MA0018.20.00767
MA0019.10.39
MA0024.18.56035e-4
MA0025.10.151
MA0027.10.739
MA0028.10.0726
MA0029.10.123
MA0030.10.302
MA0031.10.0622
MA0035.20.137
MA0038.10.55
MA0039.20.0822
MA0040.10.593
MA0041.10.389
MA0042.10.783
MA0043.10.0076
MA0046.10.0245
MA0047.20.441
MA0048.10.949
MA0050.10.0235
MA0051.10.131
MA0052.10.853
MA0055.10.188
MA0057.10.0542
MA0058.10.331
MA0059.10.709
MA0060.10.115
MA0061.10.323
MA0062.20.00265
MA0065.20.00724
MA0066.10.0972
MA0067.10.0319
MA0068.10.0241
MA0069.10.61
MA0070.10.662
MA0071.10.449
MA0072.10.818
MA0073.10.96
MA0074.10.69
MA0076.10.01
MA0077.10.35
MA0078.10.352
MA0079.20.694
MA0080.20.0446
MA0081.10.081
MA0083.10.154
MA0084.10.0364
MA0087.10.729
MA0088.10.813
MA0090.10.00655
MA0091.10.72
MA0092.10.23
MA0093.10.477
MA0099.21.35115e-11
MA0100.10.149
MA0101.10.882
MA0102.20.00517
MA0103.13.43029e-4
MA0104.20.495
MA0105.10.228
MA0106.16.70879e-6
MA0107.10.631
MA0108.20.00214
MA0111.10.95
MA0112.20.00286
MA0113.10.601
MA0114.10.0337
MA0115.10.571
MA0116.10.142
MA0117.10.351
MA0119.10.0578
MA0122.10.837
MA0124.10.882
MA0125.10.0868
MA0131.10.215
MA0135.10.216
MA0136.10.0884
MA0137.20.0104
MA0138.20.0916
MA0139.10.36
MA0140.10.533
MA0141.10.332
MA0142.10.281
MA0143.10.232
MA0144.10.902
MA0145.10.0343
MA0146.10.117
MA0147.10.694
MA0148.10.0952
MA0149.10.0369
MA0150.10.201
MA0152.10.0179
MA0153.10.0156
MA0154.10.0711
MA0155.10.171
MA0156.10.119
MA0157.10.201
MA0159.10.175
MA0160.10.248
MA0162.10.0657
MA0163.10.197
MA0164.10.71
MA0258.10.0495
MA0259.10.581



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11334

Novel motifP-value
10.588
100.695
1000.911
1010.618
1020.427
1030.173
1040.409
1050.0342
1060.0106
1070.0132
1080.323
1090.0421
110.122
1100.222
1110.104
1120.296
1130.171
1140.215
1150.775
1160.573
1170.494
1180.667
1190.127
120.653
1200.201
1210.592
1220.399
1230.858
1240.857
1250.318
1260.529
1270.0342
1280.0326
1290.0414
130.364
1300.591
1310.875
1320.23
1330.00787
1340.786
1350.245
1360.906
1370.369
1380.967
1390.441
140.609
1400.464
1410.703
1420.0811
1430.287
1440.858
1450.116
1460.0599
1470.224
1480.968
1490.224
150.455
1500.26
1510.3
1520.0402
1530.638
1540.437
1550.61
1560.0242
1570.466
1580.683
1590.727
160.212
1600.091
1610.46
1620.33
1630.857
1640.971
1650.625
1660.769
1670.229
1680.482
1690.0386
170.094
180.116
190.338
20.174
200.726
210.834
220.218
230.0504
240.24
250.856
260.334
270.259
280.915
290.832
30.333
300.213
310.375
320.575
330.451
340.376
350.626
360.622
370.335
380.218
390.191
40.195
400.014
410.486
420.465
430.249
440.606
450.16
460.242
470.297
480.171
490.319
50.519
500.417
510.339
520.255
530.976
540.355
550.189
560.268
570.354
580.613
590.0504
60.474
600.118
610.747
620.576
630.115
640.285
650.0561
660.608
670.562
680.996
690.0894
70.513
705.38074e-4
710.281
720.964
730.0479
740.431
750.33
760.683
770.021
780.187
790.736
80.151
800.668
810.807
820.215
830.578
840.409
850.169
860.895
870.442
880.235
890.0174
90.516
900.316
910.0969
920.31
930.907
940.205
950.256
960.705
970.786
980.376
990.107



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11334


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000244 (transitional epithelial cell)
0000731 (urothelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000483 (epithelium)
0005910 (transitional epithelium)
0000479 (tissue)
0004119 (endoderm-derived structure)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0005911 (endo-epithelium)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000486 (multilaminar epithelium)
0010317 (germ layer / neural crest derived structure)
0000365 (urothelium)
0001008 (renal system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000191 (human urothelial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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