FFCP PHASE1:Hg19::chr13:109568238..109568258,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr13:109568238..109568258,+ to FFCP PHASE1:Hg19::chr13:109568238..109568258,+: NSchange) |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr13:109568238..109568258,+ | |||
|description=CAGE_peak_at_chr13:109568238..109568258,+ | |||
|id=chr13:109568238..109568258,+ | |||
|ontology_enrichment_celltype=CL:0000860!1.37e-13!45;CL:0000766!3.58e-13!76;CL:0000839!3.55e-12!70;CL:0002194!5.35e-12!63;CL:0000576!5.35e-12!63;CL:0000040!5.35e-12!63;CL:0000559!5.35e-12!63;CL:0000557!7.55e-12!71;CL:0002057!1.47e-11!42;CL:0002009!2.59e-11!65;CL:0000763!2.09e-10!112;CL:0000049!2.09e-10!112 | |||
|ontology_enrichment_celltype_v019=CL:0000860;8.20e-18;33!CL:0002057;8.20e-18;33!CL:0000473;1.34e-14;39!CL:0000234;1.34e-14;39!CL:0000576;3.95e-11;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,7.25e-19,42;CL:0002057,7.25e-19,42;CL:0000473,3.16e-16,48;CL:0000234,3.16e-16,48;CL:0002194,1.56e-12,59;CL:0000576,1.56e-12,59;CL:0000040,1.56e-12,59;CL:0000559,1.56e-12,59;CL:0002009,4.68e-12,61;CL:0000766,7.95e-12,72;CL:0000839,5.45e-11,66;CL:0000557,8.52e-11,67;CL:0000763,4.10e-07,108;CL:0000049,4.10e-07,108 | |||
|ontology_enrichment_development_v019=CL:0002057;6.13e-14;42!UBERON:0005425;1.85e-07;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002405!1.36e-11!115;UBERON:0002371!2.59e-09!80;UBERON:0001474!5.83e-08!86;UBERON:0002193!4.50e-07!112;UBERON:0004765!7.53e-07!101;UBERON:0001434!7.53e-07!101 | |||
|ontology_enrichment_uberon_v019=UBERON:0003296;5.17e-15;4!UBERON:0010133;5.17e-15;4!UBERON:0000007;4.25e-14;2!UBERON:0001894;8.64e-09;7!UBERON:0002038;1.85e-07;1!UBERON:0000941;1.85e-07;1!UBERON:0001785;1.85e-07;1!UBERON:0002464;1.85e-07;1!UBERON:0004904;1.85e-07;1!UBERON:0001021;1.85e-07;1!UBERON:0009661;1.85e-07;1!UBERON:0002950;1.85e-07;1!UBERON:0001891;1.85e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003296,7.40e-15,4;UBERON:0010133,7.40e-15,4;UBERON:0000007,4.54e-14,2;UBERON:0002371,2.82e-09,76;UBERON:0001894,1.06e-08,7;UBERON:0006222,1.06e-08,7;UBERON:0001474,1.90e-08,82;UBERON:0000941,1.58e-07,1;UBERON:0001785,1.58e-07,1;UBERON:0002464,1.58e-07,1;UBERON:0004904,1.58e-07,1;UBERON:0001021,1.58e-07,1;UBERON:0003902,1.58e-07,1;UBERON:0005425,1.58e-07,1;UBERON:0004765,1.63e-07,90;UBERON:0002038,2.17e-07,1;UBERON:0009661,2.17e-07,1;UBERON:0002950,2.17e-07,1;UBERON:0001891,2.17e-07,1;UBERON:0009616,2.17e-07,1;UBERON:0010286,2.17e-07,1;UBERON:0002405,3.31e-07,93;UBERON:0002390,9.82e-07,98;UBERON:0003061,9.82e-07,98 | |||
|phase1_expression=0.181678379270557,0.214100523890983,0,0,0,0,0,0,0.261185628199839,0,0,0,0,0.123766352960047,0.331397375727916,0,0,0,0,0,0,0,0,0,0,0,0.164201178899891,0,0.393364276848904,0,0.464448369948228,0,0,0,0,0,0,1.10799081706375,0,0,0,0,0.257575567634187,0.145398238779565,0,0.242584061187816,0.464858073811369,0,0.929119112685311,1.43846196161075,1.7931249457037,1.6553756092201,2.41321976515633,1.29096936716765,1.35426486594342,0.941211697713023,0.545812300115692,0,0.918251677112708,1.28371610830437,0.639337125799041,1.31940520074686,0,1.27867425159808,0.290209238628584,0.56738522469114,0,2.00998932205395,1.5644487552606,0.868755378820466,0,0.736555271975129,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400395987036012,0,0,0,0,0,0,0,0,0,0,0,0,0.334372990781356,0,0,0,0.222820913770347,0,0,0.270803863765016,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0.0654895377488563,0,0,0.97364218096405,0.522389211897802,0.398873881556595,0,0,0,0,0,0,0,0,0,0,0,0,0.66944122552934,0,0,0.488124115096339,0,0,0.0892997282840798,0,0.112611480483322,0,0,0,0,3.87780264148325,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204154171254893,0,0.206651562351531,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241011029883482,0,0,0,0.404493924480493,0.196221465125346,0,0.738155454624648,0,0,0,3.80265104465493,0.982827216677626,2.95394953340702,0,0,0,0,0,0,0,0,1.03993478527958,0,0,0,0.144366447761074,0.925971025153221,0.190254152234598,2.37061319387782,0,0,0.234004265139238,0.148631162288728,0,0,0,0,0,0,0,0.44024217006613,0,0.144119953416961,0.12624243342638,0.063497894292169,0,0,0,0,0.600686115687835,0.285826432630578,0,0.43596006883328,0,0,3.57656445851882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.114814448164607,0,0.131124414959424,0,0,0,1.46139224653261,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328014645699706,0,6.38854272215878,0,0,0,0,0,0,0,0.15350367472613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0,0.655894752046633,0,0,0,0.143411352204052,0,0,0,0,0,0,0,0,0,0,5.08376524194607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.156679895773023,0,0,0,0,0,0.343505344755765,0,0,0,0.390776190804081,0.556812347790485,0,0,0,0,0,1.31857361344705,0,0.334330152832435,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0.20453736500431,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0.260427761085233,0,0,0.1137934482855,0,0.709163045303809,0,0,0,0,0.361789315876224,0,0.110579259931225,0,0,0,0,0.0769502585037971,0,0,0,0,0,0.0915975934018623,0,0,0.156980256395025,0,0,0,0,0.189753732724185,0,0.210998064528027,0.816164040795739,0,0,0,0.0884575645033392,0.611030144933625,0,0,0,0.269604531922708,0.802577647298789,0,0,0.586993856796269,0,0,0,0,0,0.60129367765797,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0.19351266257817,0.511625219603299,0.328461828212837,0.0969890164884194,0,0,0,0,0.0633107959558787,0,0.0801588202515337,0,0,0.144090417154106,0,0.171594997861965,0.14405479798815,0,0.235694034616795,0,0,0,0,0,0.273810757783986,0,0,0,0,0,0,0.199679000498991,0.429226048136571,0.223171457441873,0,0,0,0.0787831823072236,0.0824158583811665,0.0674035438541849,0.0984274815147488,0,0,0,0,0,0,0,0,0.0607495566580247,0,0.0788057072991982,0.157363764404994,0,0.179287339332845,0,0,0,0,0,0,0,0,0,0,0,2.63794020620548,0,0.258565912723101,0,0.171086837884329,0,0,0,0,0,0,0,0.638341257770182,0,2.7575888342497,3.06345576763462,0.983617892129413,0,0,0,0,0,0.998361463831671,0,0,0,0,0,0,0,0,0,0,0.554805861502613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.761610424337591,0,0,0,0,0,0,0,0,0,0.192619830407303,0,0,0,0,0,0,0,0,0,0.192914038270915,0,0.256241518587947,0,0,0.276516872303462,0.389720617678777,0.132864840313363,0.163565394255844,0,0.245772908753719,0.211312123358627,0,0,0,0,0.368211900503681,0,0,0,0,0,0,0,0,0,0,0,0,0.80057074828547,0,0,0.128458450192919,0,0.159633859057151,0,0,0,0.161475645631851,1.42769420259154,0.196295437002051,0,0,0,0,0,0,0.150420656698515,0,0,0,0,0,0.0675375846183947,0,0,0.0634158101939068,0,0,0,0.351742488719241,0,1.07140367175657,0,3.03482802118316,2.73194629621557,0.0887023701626388,0,0,0.203909198930495,0.0657727735628491,0.118193840883968,0,0.156986185701028,0.314231179832004,0,0,0.215927591218621,0,0.214429632529969,0,0,0,0,0,0,0,0,1.06498800657509,0.937347452350735,0,0,0,0,0.111855431797792,0.098150233615243,0,0,0,0,0,0,0,0,0.11294608203896,0,0,0,0,0.470317296361523,0,0,0,1.78227840196252,0,0,0,0,0,0,0,0.320965466756673,0,0,1.29005624836306,0,0,0,0,0,0,0,0,0,0,0,0,0.0918948995348449,0,0.0757786982182394,0,0,0.517164979309476,0,0,0,0,0.112131862580613,0,0,0,0,0.0673520530145875,0.143444410785353,0,0,0.106727345877715,0,0.0898252021065869,0,0,0,0,0.201273793591026,0.320568492303233 | |phase1_expression=0.181678379270557,0.214100523890983,0,0,0,0,0,0,0.261185628199839,0,0,0,0,0.123766352960047,0.331397375727916,0,0,0,0,0,0,0,0,0,0,0,0.164201178899891,0,0.393364276848904,0,0.464448369948228,0,0,0,0,0,0,1.10799081706375,0,0,0,0,0.257575567634187,0.145398238779565,0,0.242584061187816,0.464858073811369,0,0.929119112685311,1.43846196161075,1.7931249457037,1.6553756092201,2.41321976515633,1.29096936716765,1.35426486594342,0.941211697713023,0.545812300115692,0,0.918251677112708,1.28371610830437,0.639337125799041,1.31940520074686,0,1.27867425159808,0.290209238628584,0.56738522469114,0,2.00998932205395,1.5644487552606,0.868755378820466,0,0.736555271975129,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400395987036012,0,0,0,0,0,0,0,0,0,0,0,0,0.334372990781356,0,0,0,0.222820913770347,0,0,0.270803863765016,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0.0654895377488563,0,0,0.97364218096405,0.522389211897802,0.398873881556595,0,0,0,0,0,0,0,0,0,0,0,0,0.66944122552934,0,0,0.488124115096339,0,0,0.0892997282840798,0,0.112611480483322,0,0,0,0,3.87780264148325,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204154171254893,0,0.206651562351531,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241011029883482,0,0,0,0.404493924480493,0.196221465125346,0,0.738155454624648,0,0,0,3.80265104465493,0.982827216677626,2.95394953340702,0,0,0,0,0,0,0,0,1.03993478527958,0,0,0,0.144366447761074,0.925971025153221,0.190254152234598,2.37061319387782,0,0,0.234004265139238,0.148631162288728,0,0,0,0,0,0,0,0.44024217006613,0,0.144119953416961,0.12624243342638,0.063497894292169,0,0,0,0,0.600686115687835,0.285826432630578,0,0.43596006883328,0,0,3.57656445851882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.114814448164607,0,0.131124414959424,0,0,0,1.46139224653261,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328014645699706,0,6.38854272215878,0,0,0,0,0,0,0,0.15350367472613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0,0.655894752046633,0,0,0,0.143411352204052,0,0,0,0,0,0,0,0,0,0,5.08376524194607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.156679895773023,0,0,0,0,0,0.343505344755765,0,0,0,0.390776190804081,0.556812347790485,0,0,0,0,0,1.31857361344705,0,0.334330152832435,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0.20453736500431,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0.260427761085233,0,0,0.1137934482855,0,0.709163045303809,0,0,0,0,0.361789315876224,0,0.110579259931225,0,0,0,0,0.0769502585037971,0,0,0,0,0,0.0915975934018623,0,0,0.156980256395025,0,0,0,0,0.189753732724185,0,0.210998064528027,0.816164040795739,0,0,0,0.0884575645033392,0.611030144933625,0,0,0,0.269604531922708,0.802577647298789,0,0,0.586993856796269,0,0,0,0,0,0.60129367765797,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0.19351266257817,0.511625219603299,0.328461828212837,0.0969890164884194,0,0,0,0,0.0633107959558787,0,0.0801588202515337,0,0,0.144090417154106,0,0.171594997861965,0.14405479798815,0,0.235694034616795,0,0,0,0,0,0.273810757783986,0,0,0,0,0,0,0.199679000498991,0.429226048136571,0.223171457441873,0,0,0,0.0787831823072236,0.0824158583811665,0.0674035438541849,0.0984274815147488,0,0,0,0,0,0,0,0,0.0607495566580247,0,0.0788057072991982,0.157363764404994,0,0.179287339332845,0,0,0,0,0,0,0,0,0,0,0,2.63794020620548,0,0.258565912723101,0,0.171086837884329,0,0,0,0,0,0,0,0.638341257770182,0,2.7575888342497,3.06345576763462,0.983617892129413,0,0,0,0,0,0.998361463831671,0,0,0,0,0,0,0,0,0,0,0.554805861502613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.761610424337591,0,0,0,0,0,0,0,0,0,0.192619830407303,0,0,0,0,0,0,0,0,0,0.192914038270915,0,0.256241518587947,0,0,0.276516872303462,0.389720617678777,0.132864840313363,0.163565394255844,0,0.245772908753719,0.211312123358627,0,0,0,0,0.368211900503681,0,0,0,0,0,0,0,0,0,0,0,0,0.80057074828547,0,0,0.128458450192919,0,0.159633859057151,0,0,0,0.161475645631851,1.42769420259154,0.196295437002051,0,0,0,0,0,0,0.150420656698515,0,0,0,0,0,0.0675375846183947,0,0,0.0634158101939068,0,0,0,0.351742488719241,0,1.07140367175657,0,3.03482802118316,2.73194629621557,0.0887023701626388,0,0,0.203909198930495,0.0657727735628491,0.118193840883968,0,0.156986185701028,0.314231179832004,0,0,0.215927591218621,0,0.214429632529969,0,0,0,0,0,0,0,0,1.06498800657509,0.937347452350735,0,0,0,0,0.111855431797792,0.098150233615243,0,0,0,0,0,0,0,0,0.11294608203896,0,0,0,0,0.470317296361523,0,0,0,1.78227840196252,0,0,0,0,0,0,0,0.320965466756673,0,0,1.29005624836306,0,0,0,0,0,0,0,0,0,0,0,0,0.0918948995348449,0,0.0757786982182394,0,0,0.517164979309476,0,0,0,0,0.112131862580613,0,0,0,0,0.0673520530145875,0.143444410785353,0,0,0.106727345877715,0,0.0898252021065869,0,0,0,0,0.201273793591026,0.320568492303233 | ||
|short_description=p@chr13:109568238..109568258,+ | |||
}} | }} |
Latest revision as of 14:26, 24 July 2015
Short description: | p@chr13:109568238..109568258, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr13:109568238..109568258, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 7.25e-19 | 42 |
CD14-positive, CD16-negative classical monocyte | 7.25e-19 | 42 |
defensive cell | 3.16e-16 | 48 |
phagocyte | 3.16e-16 | 48 |
monopoietic cell | 1.56e-12 | 59 |
monocyte | 1.56e-12 | 59 |
monoblast | 1.56e-12 | 59 |
promonocyte | 1.56e-12 | 59 |
macrophage dendritic cell progenitor | 4.68e-12 | 61 |
myeloid leukocyte | 7.95e-12 | 72 |
myeloid lineage restricted progenitor cell | 5.45e-11 | 66 |
granulocyte monocyte progenitor cell | 8.52e-11 | 67 |
myeloid cell | 4.10e-07 | 108 |
common myeloid progenitor | 4.10e-07 | 108 |
Ontology term | p-value | n |
---|---|---|
gland of diencephalon | 7.40e-15 | 4 |
neuroendocrine gland | 7.40e-15 | 4 |
pituitary gland | 4.54e-14 | 2 |
bone marrow | 2.82e-09 | 76 |
diencephalon | 1.06e-08 | 7 |
future diencephalon | 1.06e-08 | 7 |
bone element | 1.90e-08 | 82 |
cranial nerve II | 1.58e-07 | 1 |
cranial nerve | 1.58e-07 | 1 |
nerve trunk | 1.58e-07 | 1 |
nerve connecting eye with brain | 1.58e-07 | 1 |
nerve | 1.58e-07 | 1 |
retinal neural layer | 1.58e-07 | 1 |
presumptive neural retina | 1.58e-07 | 1 |
skeletal element | 1.63e-07 | 90 |
substantia nigra | 2.17e-07 | 1 |
midbrain nucleus | 2.17e-07 | 1 |
regional part of midbrain | 2.17e-07 | 1 |
midbrain | 2.17e-07 | 1 |
presumptive midbrain | 2.17e-07 | 1 |
midbrain neural tube | 2.17e-07 | 1 |
immune system | 3.31e-07 | 93 |
hematopoietic system | 9.82e-07 | 98 |
blood island | 9.82e-07 | 98 |