FFCP PHASE1:Hg19::chr14:73924954..73925009,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr14:73924954..73925009,- to FFCP PHASE1:Hg19::chr14:73924954..73925009,-: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=8650 | |EntrezGene=8650 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8060 | |HGNC=8060 | ||
|TSSclassifier=strong | |||
|UniProt=G3V4S6,G3V3R1 | |UniProt=G3V4S6,G3V3R1 | ||
|association_with_transcript=0bp_to_ENST00000554818,ENST00000555307_5end | |||
|cluster_id=chr14:73924954..73925009,- | |||
|coexpression_cluster_id=C17 | |||
|description=CAGE_peak_3_at_NUMB_5end | |||
|id=chr14:73924954..73925009,- | |||
|ontology_enrichment_celltype=CL:0000557!9.59e-16!71;CL:0000766!1.42e-15!76;CL:0002009!4.12e-15!65;CL:0002057!4.53e-15!42;CL:0002194!3.22e-14!63;CL:0000576!3.22e-14!63;CL:0000040!3.22e-14!63;CL:0000559!3.22e-14!63;CL:0000839!3.72e-14!70;CL:0000860!2.40e-12!45 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.19e-21;33!CL:0002057;2.19e-21;33!CL:0000473;3.90e-18;39!CL:0000234;3.90e-18;39!CL:0000576;1.68e-12;48!CL:0000766;2.34e-10;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000557,2.46e-23,67;CL:0000766,2.86e-23,72;CL:0000473,1.81e-22,48;CL:0000234,1.81e-22,48;CL:0002009,3.84e-22,61;CL:0000839,2.28e-21,66;CL:0000860,2.39e-21,42;CL:0002057,2.39e-21,42;CL:0002194,8.69e-21,59;CL:0000576,8.69e-21,59;CL:0000040,8.69e-21,59;CL:0000559,8.69e-21,59;CL:0000048,2.53e-11,427;CL:0000763,7.83e-11,108;CL:0000049,7.83e-11,108;CL:0000723,1.41e-10,433;CL:0000034,4.17e-10,441;CL:0000738,3.71e-08,136;CL:0002031,8.03e-08,120;CL:0000134,3.47e-07,354;CL:0002320,9.52e-07,361 | |||
|ontology_enrichment_development_v019=CL:0002057;2.81e-15;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!3.91e-19!216;UBERON:0002204!2.62e-18!167;UBERON:0000926!4.23e-18!448;UBERON:0004120!4.23e-18!448;UBERON:0006603!4.23e-18!448;UBERON:0000467!9.96e-16!625;UBERON:0000480!1.03e-15!626;UBERON:0002390!2.10e-15!102;UBERON:0003061!2.10e-15!102;UBERON:0002371!2.62e-15!80;UBERON:0002193!1.69e-14!112;UBERON:0001474!6.44e-14!86;UBERON:0000468!9.89e-14!659;UBERON:0004765!8.52e-13!101;UBERON:0001434!8.52e-13!101;UBERON:0002050!1.01e-11!605;UBERON:0005423!1.01e-11!605;UBERON:0000923!1.89e-11!604;UBERON:0005291!1.89e-11!604;UBERON:0006598!1.89e-11!604;UBERON:0002532!1.89e-11!604;UBERON:0000922!3.15e-11!612;UBERON:0002405!5.19e-11!115;UBERON:0004535!1.72e-09!110;UBERON:0001009!9.04e-09!113;UBERON:0004573!1.18e-08!33;UBERON:0004571!1.18e-08!33;UBERON:0004872!5.60e-08!84;UBERON:0001637!1.00e-07!42;UBERON:0003509!1.00e-07!42;UBERON:0004572!1.00e-07!42;UBERON:0001981!6.92e-07!60;UBERON:0007500!6.92e-07!60;UBERON:0004537!6.92e-07!60;UBERON:0006965!6.92e-07!60 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;7.42e-07;33!UBERON:0004571;7.42e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003081,5.48e-24,203;UBERON:0000926,3.42e-23,315;UBERON:0004120,3.42e-23,315;UBERON:0006603,3.42e-23,315;UBERON:0002371,6.71e-23,76;UBERON:0002390,1.17e-22,98;UBERON:0003061,1.17e-22,98;UBERON:0001474,7.48e-22,82;UBERON:0002193,4.79e-20,108;UBERON:0002204,6.28e-20,167;UBERON:0004765,7.98e-19,90;UBERON:0002405,1.12e-16,93;UBERON:0001434,1.22e-15,100;UBERON:0000923,5.49e-09,560;UBERON:0010316,5.49e-09,560;UBERON:0005291,5.49e-09,560;UBERON:0006598,5.49e-09,560;UBERON:0010317,5.49e-09,560;UBERON:0002532,5.49e-09,560;UBERON:0002050,6.09e-09,564;UBERON:0005423,6.02e-08,581;UBERON:0004573,1.26e-07,33;UBERON:0004571,1.26e-07,33;UBERON:0000922,3.50e-07,592;UBERON:0004535,9.62e-07,109 | |||
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| ||
|short_description=p3@NUMB | |||
}} | }} |
Latest revision as of 23:07, 15 September 2015
Short description: | p3@NUMB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_NUMB_5end |
Coexpression cluster: | C17_Mast_CD14_Monocytederived_Lymphatic_Smooth_mesenchymal_Macrophage |
Association with transcript: | 0bp_to_ENST00000554818, ENST00000555307_5end |
EntrezGene: | NUMB |
HGNC: | 8060 |
UniProt: | G3V4S6G3V3R1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
granulocyte monocyte progenitor cell | 2.46e-23 | 67 |
myeloid leukocyte | 2.86e-23 | 72 |
defensive cell | 1.81e-22 | 48 |
phagocyte | 1.81e-22 | 48 |
macrophage dendritic cell progenitor | 3.84e-22 | 61 |
myeloid lineage restricted progenitor cell | 2.28e-21 | 66 |
classical monocyte | 2.39e-21 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.39e-21 | 42 |
monopoietic cell | 8.69e-21 | 59 |
monocyte | 8.69e-21 | 59 |
monoblast | 8.69e-21 | 59 |
promonocyte | 8.69e-21 | 59 |
multi fate stem cell | 2.53e-11 | 427 |
myeloid cell | 7.83e-11 | 108 |
common myeloid progenitor | 7.83e-11 | 108 |
somatic stem cell | 1.41e-10 | 433 |
stem cell | 4.17e-10 | 441 |
leukocyte | 3.71e-08 | 136 |
hematopoietic lineage restricted progenitor cell | 8.03e-08 | 120 |
mesenchymal cell | 3.47e-07 | 354 |
connective tissue cell | 9.52e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
lateral plate mesoderm | 5.48e-24 | 203 |
mesoderm | 3.42e-23 | 315 |
mesoderm-derived structure | 3.42e-23 | 315 |
presumptive mesoderm | 3.42e-23 | 315 |
bone marrow | 6.71e-23 | 76 |
hematopoietic system | 1.17e-22 | 98 |
blood island | 1.17e-22 | 98 |
bone element | 7.48e-22 | 82 |
hemolymphoid system | 4.79e-20 | 108 |
musculoskeletal system | 6.28e-20 | 167 |
skeletal element | 7.98e-19 | 90 |
immune system | 1.12e-16 | 93 |
skeletal system | 1.22e-15 | 100 |
germ layer | 5.49e-09 | 560 |
germ layer / neural crest | 5.49e-09 | 560 |
embryonic tissue | 5.49e-09 | 560 |
presumptive structure | 5.49e-09 | 560 |
germ layer / neural crest derived structure | 5.49e-09 | 560 |
epiblast (generic) | 5.49e-09 | 560 |
embryonic structure | 6.09e-09 | 564 |
developing anatomical structure | 6.02e-08 | 581 |
systemic artery | 1.26e-07 | 33 |
systemic arterial system | 1.26e-07 | 33 |
embryo | 3.50e-07 | 592 |
cardiovascular system | 9.62e-07 | 109 |