FFCP PHASE1:Hg19::chr22:24552458..24552506,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr22:24552458..24552506,+ to FFCP PHASE1:Hg19::chr22:24552458..24552506,+: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=23523 | |EntrezGene=23523 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24187 | |HGNC=24187 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000495121_5end | |||
|cluster_id=chr22:24552458..24552506,+ | |||
|description=CAGE_peak_6_at_CABIN1_5end | |||
|id=chr22:24552458..24552506,+ | |||
|ontology_enrichment_celltype=CL:0000838!1.32e-12!52;CL:0000542!2.10e-12!53;CL:0000051!2.10e-12!53;CL:0002087!6.67e-07!119 | |||
|ontology_enrichment_celltype_v019=CL:0000542;1.04e-07;53!CL:0000791;7.00e-07;18!CL:0000789;7.00e-07;18!CL:0002419;7.00e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,3.92e-12,52;CL:0000542,9.71e-12,53;CL:0000051,9.71e-12,53;CL:0000791,6.76e-07,18;CL:0000789,6.76e-07,18;CL:0002420,6.76e-07,18;CL:0002419,6.76e-07,18;CL:0000790,6.76e-07,18 | |||
|ontology_enrichment_development_v019=CL:0000051;1.04e-07;53!CL:0000790;7.00e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001869!1.13e-12!32;UBERON:0001893!1.53e-12!34;UBERON:0002791!6.62e-12!33;UBERON:0002619!6.74e-12!22;UBERON:0002780!1.71e-11!41;UBERON:0001890!1.71e-11!41;UBERON:0006240!1.71e-11!41;UBERON:0007023!5.78e-11!115;UBERON:0001950!7.65e-11!20;UBERON:0003080!8.06e-11!42;UBERON:0002020!1.04e-10!34;UBERON:0003528!1.04e-10!34;UBERON:0000955!3.33e-10!69;UBERON:0006238!3.33e-10!69;UBERON:0002616!5.92e-10!59;UBERON:0000956!6.85e-10!25;UBERON:0000203!6.85e-10!25;UBERON:0001049!1.74e-09!57;UBERON:0005068!1.74e-09!57;UBERON:0006241!1.74e-09!57;UBERON:0007135!1.74e-09!57;UBERON:0001017!1.22e-08!82;UBERON:0005743!1.07e-07!86;UBERON:0000073!3.90e-07!94;UBERON:0001016!3.90e-07!94;UBERON:0003056!5.64e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;7.53e-21;22!UBERON:0001869;2.59e-19;32!UBERON:0001950;4.61e-19;20!UBERON:0002791;1.00e-17;32!UBERON:0001893;1.15e-17;34!UBERON:0000956;1.35e-17;25!UBERON:0000203;1.35e-17;25!UBERON:0003528;5.06e-16;34!UBERON:0002020;5.06e-16;34!UBERON:0002780;1.67e-12;41!UBERON:0001890;1.67e-12;41!UBERON:0002390;6.81e-11;32!UBERON:0000200;3.34e-09;6!UBERON:0002193;1.30e-08;42!UBERON:0000178;4.25e-08;15!UBERON:0000179;4.25e-08;15!UBERON:0000463;4.25e-08;15!UBERON:0000073;9.58e-08;53!UBERON:0002616;9.58e-08;53!UBERON:0001871;2.89e-07;6!UBERON:0000349;3.28e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001869,1.54e-21,32;UBERON:0002619,5.70e-21,22;UBERON:0001893,8.95e-20,34;UBERON:0002791,1.84e-19,32;UBERON:0001950,5.22e-19,20;UBERON:0002780,5.68e-18,41;UBERON:0001890,5.68e-18,41;UBERON:0003080,5.68e-18,41;UBERON:0006240,5.68e-18,41;UBERON:0003528,7.60e-18,34;UBERON:0002020,7.60e-18,34;UBERON:0000956,1.06e-17,25;UBERON:0000203,1.06e-17,25;UBERON:0007023,4.79e-15,114;UBERON:0000073,4.40e-14,53;UBERON:0002616,4.40e-14,53;UBERON:0003056,1.21e-13,61;UBERON:0001049,7.84e-13,56;UBERON:0005068,7.84e-13,56;UBERON:0006241,7.84e-13,56;UBERON:0007135,7.84e-13,56;UBERON:0000955,1.39e-11,68;UBERON:0006238,1.39e-11,68;UBERON:0001017,1.85e-10,81;UBERON:0003075,6.00e-10,82;UBERON:0007284,6.00e-10,82;UBERON:0001016,7.78e-10,89;UBERON:0002346,8.87e-10,86;UBERON:0000200,3.33e-09,6;UBERON:0000178,6.47e-08,15;UBERON:0000179,6.47e-08,15;UBERON:0000463,6.47e-08,15;UBERON:0000349,1.89e-07,5;UBERON:0001871,3.53e-07,6 | |||
|phase1_expression=0.363356758541113,0.214100523890983,0.140954404095971,1.0007329835313,0,0,0,0,0.522371256399677,0,0,0.218441372130172,0,0.495065411840187,0.331397375727916,0,0,0.730310090387373,0,0.861847406537515,0.816002764977012,0.940364164434263,0,0.410623275218653,0,1.22261449196722,1.80621296789881,2.04648031415566,1.96682138424452,0,1.23852898652861,0,0.30120591877825,0,1.31694240986513,0.426507697462265,1.46800219667424,0,0.802177789880567,0.434021741431704,0.223915474239924,0.32389366601898,0.515151135268373,0,0.377875943688809,0.727752183563449,0.464858073811369,0,0,0.575384784644301,0.256160706529101,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0.426224750532694,0.290209238628584,0,0,0.251248665256743,0.521482918420201,0,0,0,0,0.845021145247767,0.637812899895131,1.25795187305026,1.12328631146495,2.4028302854641,1.28580469357664,0.570025487482497,0.79566670879636,0.730656615058536,1.75996244461323,0.546138611262131,2.66852776159066,2.13365111283254,2.40237592221607,1.72425731986345,0.661044872784862,1.90810750907073,2.27685187643779,1.17447437874188,0,1.32171328579026,5.04457706683382,0.526768169550154,0.590129310341499,2.35806457649499,1.23360899399706,1.83905144929746,0.977766799900771,0.946895611469467,1.94826728407911,2.1167986808183,1.47302953737419,0.443067789167242,0.270803863765016,1.15282187753108,1.1705341280389,3.28875809207352,0.552700035571697,0.869409257205157,2.37258501059297,2.1403266247177,4.18142095219907,0.906474741580529,2.68254345521345,1.37450978193052,1.51811815211702,1.27426165729639,0.651083453856419,2.85135613334512,1.35517607169996,1.66382594500744,0,1.18388626022008,0.821127996921047,2.01606743224732,2.13952156626806,1.44824403882799,0,1.34140171940727,0.12786256184353,0.361439152384566,1.00267582127178,0.289693037921647,0,0,1.22895262313288,0.886917589850256,1.84453049955565,0.982343066232845,0,0,1.62273696827342,2.96020553408754,1.99436940778298,0.238490624305342,0,0,0.198762407366705,0.860234595106124,0,0.56530794192401,0,0.275118041940067,0.417989933073621,0.516833518338658,0,0,0.805658634218294,0,0.24406205754817,0,0,0.357198913136319,0,0,0,0,0.366403487860815,1.31780417436063,0,0,0,0,0.264818361626438,0,1.06400514659507,0,0,0.98667019366864,0.311211035399766,0.134710672069688,0.326923806226917,0.302714855289863,0.576175924479999,0,0.624320153660641,0.570471821544449,1.64393548606981,0,0.161872944368132,0,0,0.61417158655884,0,0,0.494533858557114,1.82032272387605,1.43723628363248,0.168336113954066,0.375355559615893,0.277064115484183,0.438977620880838,0,0.300476117813194,0.226864366320042,0.358779271377724,0.213557388818567,0.423863802319124,0.900273288253207,1.13357782162283,0.515281080091258,0.558350568994769,1.18143432568886,0.389748020644795,0.504867548488229,0.552299391853796,1.61646056818812,0,0.10075209822764,0.339121184620975,0,0,0,0,0,0.116193942869518,0.207322110030741,0,0,0,0.643240938192885,1.38134921352481,0,0.721879481669586,0,0,0,0,0,0,0,0,0,0.738155454624648,1.40241773803446,0.4115740113314,1.47008711385542,0,0,0.590789906681404,0,0,0.171567810298526,0,0,0,0,0,0,1.44331342025273,0,0.469634776943287,0.577465791044295,0,0.380508304469197,0,0,0.246217006087397,1.40402559083543,0.445893486866185,0,0,0,0,0,0,1.47798971368783,18.9304133128436,0.207328115540772,0,0,0.507983154337352,1.14596527667483,0,3.4214489204541,0.102827492703324,1.20137223137567,0.857479297891735,0.448524337381443,0,0.51336800074665,0.646358578788889,3.57656445851882,0,1.86156681609409,0,1.02882949704857,1.41849132023278,1.5985330740966,0.142977993658148,0.542621605391443,0,0.65147236858747,0,0,0,0,0,0,0,0,0.239624855491583,0,0,0,0.821905290201534,0.179060963239896,0.336255431980582,2.75843064282698,3.23441362289276,1.41177339907723,0.254094624222463,0,1.54657762555539,0,0,2.24702107184155,0,2.90090859405225,0.858840442033979,0.500170521059677,0,2.28767947683888,0.713715955188647,0.315404830067869,0.937131319941706,0.902838299183157,2.27407504055985,0,0.664225598535437,0.737476674166813,0.0868836144680828,0.195801157462741,0.686286847621712,1.03384013061444,1.2942852049117,1.60091336705167,0,0,0,0,0.306923946576125,0.561320188866147,0,0,0.160853921143607,0,0.616838775210622,0.887808626565635,0.739144404124282,1.03850885836724,0.813472649219715,0,0,0,0.229628896329213,0.182091168006717,0.786746489756545,0,0,0,0,0.211103257785751,2.27466768141793,0.340187410553031,0,0,0,1.00337954770971,0.254876273045038,0,0,0,0,0,0,0,0.206082023295445,0.183138929636687,0.41254749960294,0,0,0,0.096670718292122,0.616194468458578,0.921022048356777,0.551346289938122,0.537101224341368,0.290033387828457,1.36362603865761,0.801288320820636,0,0,0,0,0,0,0.6970372701606,1.23213432070436,1.59691809095107,0,0.18532421910392,0,0.372158369359667,0.316379424718726,0.571890581771475,1.02359116524534,1.28381696410176,2.22742273548156,0,0.719489830333259,0.274537029736055,0,0.808729926293264,0,0.421258456238981,1.46290121726877,0.731140468893853,1.05650146756755,0.682499557039929,0.141405431953713,2.26016233240486,0,0,0.438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| ||
|short_description=p6@CABIN1 | |||
}} | }} |
Latest revision as of 10:12, 19 September 2015
Short description: | p6@CABIN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_CABIN1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000495121_5end |
EntrezGene: | CABIN1 |
HGNC: | 24187 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 3.92e-12 | 52 |
lymphocyte | 9.71e-12 | 53 |
common lymphoid progenitor | 9.71e-12 | 53 |
mature alpha-beta T cell | 6.76e-07 | 18 |
alpha-beta T cell | 6.76e-07 | 18 |
immature T cell | 6.76e-07 | 18 |
mature T cell | 6.76e-07 | 18 |
immature alpha-beta T cell | 6.76e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
cerebral hemisphere | 1.54e-21 | 32 |
regional part of cerebral cortex | 5.70e-21 | 22 |
telencephalon | 8.95e-20 | 34 |
regional part of telencephalon | 1.84e-19 | 32 |
neocortex | 5.22e-19 | 20 |
regional part of forebrain | 5.68e-18 | 41 |
forebrain | 5.68e-18 | 41 |
anterior neural tube | 5.68e-18 | 41 |
future forebrain | 5.68e-18 | 41 |
brain grey matter | 7.60e-18 | 34 |
gray matter | 7.60e-18 | 34 |
cerebral cortex | 1.06e-17 | 25 |
pallium | 1.06e-17 | 25 |
adult organism | 4.79e-15 | 114 |
regional part of nervous system | 4.40e-14 | 53 |
regional part of brain | 4.40e-14 | 53 |
pre-chordal neural plate | 1.21e-13 | 61 |
neural tube | 7.84e-13 | 56 |
neural rod | 7.84e-13 | 56 |
future spinal cord | 7.84e-13 | 56 |
neural keel | 7.84e-13 | 56 |
brain | 1.39e-11 | 68 |
future brain | 1.39e-11 | 68 |
central nervous system | 1.85e-10 | 81 |
neural plate | 6.00e-10 | 82 |
presumptive neural plate | 6.00e-10 | 82 |
nervous system | 7.78e-10 | 89 |
neurectoderm | 8.87e-10 | 86 |
gyrus | 3.33e-09 | 6 |
blood | 6.47e-08 | 15 |
haemolymphatic fluid | 6.47e-08 | 15 |
organism substance | 6.47e-08 | 15 |
limbic system | 1.89e-07 | 5 |
temporal lobe | 3.53e-07 | 6 |