FFCP PHASE1:Hg19::chr2:160654706..160654744,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr2:160654706..160654744,- to FFCP PHASE1:Hg19::chr2:160654706..160654744,-: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9936 | |EntrezGene=9936 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30843 | |HGNC=30843 | ||
|TSSclassifier=strong | |||
|UniProt=Q8IX05,B4E2T9 | |UniProt=Q8IX05,B4E2T9 | ||
|association_with_transcript=8bp_to_ENST00000259053,ENST00000429078,ENST00000480212_5end | |||
|cluster_id=chr2:160654706..160654744,- | |||
|description=CAGE_peak_1_at_CD302_5end | |||
|id=chr2:160654706..160654744,- | |||
|ontology_enrichment_celltype=CL:0000766!6.20e-33!76;CL:0000557!7.26e-29!71;CL:0002009!8.65e-28!65;CL:0002194!6.62e-27!63;CL:0000576!6.62e-27!63;CL:0000040!6.62e-27!63;CL:0000559!6.62e-27!63;CL:0000839!2.20e-26!70;CL:0002057!6.26e-26!42;CL:0000763!2.19e-25!112;CL:0000049!2.19e-25!112;CL:0000860!2.17e-21!45;CL:0002320!1.63e-13!365;CL:0000134!1.39e-12!358;CL:0000219!4.54e-10!390;CL:0000048!2.19e-09!430;CL:0000723!3.78e-08!436;CL:0000034!1.14e-07!444;CL:0000136!9.10e-07!15 | |||
|ontology_enrichment_celltype_v019=CL:0000860;6.13e-19;33!CL:0002057;6.13e-19;33!CL:0000576;1.32e-18;48!CL:0000473;5.81e-18;39!CL:0000234;5.81e-18;39!CL:0000766;5.82e-16;69!CL:0000763;4.81e-10;100!CL:0000136;1.43e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,2.15e-37,72;CL:0000557,3.98e-33,67;CL:0002009,3.29e-32,61;CL:0002194,2.53e-31,59;CL:0000576,2.53e-31,59;CL:0000040,2.53e-31,59;CL:0000559,2.53e-31,59;CL:0000839,2.03e-30,66;CL:0000473,2.22e-28,48;CL:0000234,2.22e-28,48;CL:0000763,2.62e-28,108;CL:0000049,2.62e-28,108;CL:0000860,5.10e-26,42;CL:0002057,5.10e-26,42;CL:0002320,1.67e-14,361;CL:0000134,1.54e-13,354;CL:0000219,8.12e-11,386;CL:0000048,2.95e-10,427;CL:0000723,6.51e-09,433;CL:0000034,2.39e-08,441;CL:0000136,8.70e-07,15 | |||
|ontology_enrichment_development_v019=CL:0002057;6.67e-19;42!CL:0000049;2.56e-08;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!4.84e-27!112;UBERON:0002405!6.46e-27!115;UBERON:0002390!7.89e-27!102;UBERON:0003061!7.89e-27!102;UBERON:0002371!9.19e-27!80;UBERON:0001474!8.19e-25!86;UBERON:0004765!1.56e-22!101;UBERON:0001434!1.56e-22!101;UBERON:0007023!6.05e-18!115;UBERON:0002204!1.77e-15!167;UBERON:0002384!1.48e-13!375;UBERON:0003081!4.24e-11!216;UBERON:0000479!1.26e-10!787;UBERON:0000468!4.01e-09!659;UBERON:0000467!8.58e-09!625;UBERON:0000480!1.12e-08!626;UBERON:0000062!8.43e-08!511;UBERON:0000926!1.48e-07!448;UBERON:0004120!1.48e-07!448;UBERON:0006603!1.48e-07!448 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.56e-30,76;UBERON:0002193,2.22e-30,108;UBERON:0002390,2.35e-30,98;UBERON:0003061,2.35e-30,98;UBERON:0001474,3.34e-28,82;UBERON:0002405,2.70e-27,93;UBERON:0004765,9.48e-26,90;UBERON:0001434,1.00e-25,100;UBERON:0007023,7.64e-18,114;UBERON:0002204,8.99e-18,167;UBERON:0000926,1.17e-14,315;UBERON:0004120,1.17e-14,315;UBERON:0006603,1.17e-14,315;UBERON:0003081,1.30e-14,203;UBERON:0002384,1.47e-14,371;UBERON:0000479,3.18e-13,773;UBERON:0000923,3.44e-09,560;UBERON:0010316,3.44e-09,560;UBERON:0005291,3.44e-09,560;UBERON:0006598,3.44e-09,560;UBERON:0010317,3.44e-09,560;UBERON:0002532,3.44e-09,560;UBERON:0002050,1.02e-08,564 | |||
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| ||
|short_description=p1@CD302 | |||
}} | }} |
Latest revision as of 19:07, 17 September 2015
Short description: | p1@CD302 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CD302_5end |
Coexpression cluster: | NA |
Association with transcript: | 8bp_to_ENST00000259053, ENST00000429078, ENST00000480212_5end |
EntrezGene: | CD302 |
HGNC: | 30843 |
UniProt: | Q8IX05B4E2T9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 2.15e-37 | 72 |
granulocyte monocyte progenitor cell | 3.98e-33 | 67 |
macrophage dendritic cell progenitor | 3.29e-32 | 61 |
monopoietic cell | 2.53e-31 | 59 |
monocyte | 2.53e-31 | 59 |
monoblast | 2.53e-31 | 59 |
promonocyte | 2.53e-31 | 59 |
myeloid lineage restricted progenitor cell | 2.03e-30 | 66 |
defensive cell | 2.22e-28 | 48 |
phagocyte | 2.22e-28 | 48 |
myeloid cell | 2.62e-28 | 108 |
common myeloid progenitor | 2.62e-28 | 108 |
classical monocyte | 5.10e-26 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.10e-26 | 42 |
connective tissue cell | 1.67e-14 | 361 |
mesenchymal cell | 1.54e-13 | 354 |
motile cell | 8.12e-11 | 386 |
multi fate stem cell | 2.95e-10 | 427 |
somatic stem cell | 6.51e-09 | 433 |
stem cell | 2.39e-08 | 441 |
fat cell | 8.70e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.56e-30 | 76 |
hemolymphoid system | 2.22e-30 | 108 |
hematopoietic system | 2.35e-30 | 98 |
blood island | 2.35e-30 | 98 |
bone element | 3.34e-28 | 82 |
immune system | 2.70e-27 | 93 |
skeletal element | 9.48e-26 | 90 |
skeletal system | 1.00e-25 | 100 |
adult organism | 7.64e-18 | 114 |
musculoskeletal system | 8.99e-18 | 167 |
mesoderm | 1.17e-14 | 315 |
mesoderm-derived structure | 1.17e-14 | 315 |
presumptive mesoderm | 1.17e-14 | 315 |
lateral plate mesoderm | 1.30e-14 | 203 |
connective tissue | 1.47e-14 | 371 |
tissue | 3.18e-13 | 773 |
germ layer | 3.44e-09 | 560 |
germ layer / neural crest | 3.44e-09 | 560 |
embryonic tissue | 3.44e-09 | 560 |
presumptive structure | 3.44e-09 | 560 |
germ layer / neural crest derived structure | 3.44e-09 | 560 |
epiblast (generic) | 3.44e-09 | 560 |
embryonic structure | 1.02e-08 | 564 |