FFCP PHASE1:Hg19::chr2:216242925..216242993,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr2:216242925..216242993,- to FFCP PHASE1:Hg19::chr2:216242925..216242993,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2335 | |EntrezGene=2335 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=3778 | |HGNC=3778 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_uc002vfk.1,uc010fva.1,uc010fvb.1_5end | |||
|cluster_id=chr2:216242925..216242993,- | |||
|coexpression_cluster_id=C79 | |||
|description=CAGE_peak_27_at_FN1_5end | |||
|id=chr2:216242925..216242993,- | |||
|ontology_enrichment_celltype=CL:0000055!9.87e-35!180;CL:0000057!5.62e-22!75;CL:0000680!2.60e-16!57;CL:0000056!2.60e-16!57;CL:0000355!2.60e-16!57;CL:0000183!1.90e-15!59;CL:0000187!5.41e-15!54;CL:0002371!3.34e-14!591;CL:0000222!6.46e-13!119;CL:0000393!1.47e-12!60;CL:0000211!1.47e-12!60;CL:0000144!4.83e-12!625;CL:0000220!5.23e-12!246;CL:0002321!1.64e-11!248;CL:0000192!1.43e-10!42;CL:0000514!1.43e-10!42;CL:0000359!2.55e-09!32;CL:0002620!2.45e-08!23;CL:0000548!8.88e-08!679;CL:0000004!8.88e-08!679;CL:0000255!8.88e-08!679;CL:0000048!9.51e-08!430;CL:0002494!1.21e-07!16;CL:0002334!2.58e-07!12;CL:0000012!2.76e-07!682;CL:0000723!3.14e-07!436 | |||
|ontology_enrichment_celltype_v019=CL:0000134;2.18e-11;55!CL:0000723;1.95e-10;61!CL:0000359;4.10e-10;32!CL:0000057;5.26e-10;73!CL:0000187;1.20e-09;55!CL:0000048;1.41e-09;58!CL:0002620;1.44e-09;23!CL:0002320;8.66e-09;188!CL:0002494;1.67e-08;16!CL:0000192;1.79e-08;43!CL:0002334;3.18e-08;12!CL:0000034;5.88e-08;69!CL:0000349;1.51e-07;19!CL:0000393;3.17e-07;61!CL:0000211;3.17e-07;61!CL:0000499;8.80e-07;28 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,6.90e-25,76;CL:0000048,3.26e-18,427;CL:0000680,4.07e-18,58;CL:0000056,4.07e-18,58;CL:0000355,4.07e-18,58;CL:0000723,2.09e-17,433;CL:0000187,1.30e-16,55;CL:0000034,1.80e-16,441;CL:0000393,3.59e-13,61;CL:0000211,3.59e-13,61;CL:0000192,1.45e-11,43;CL:0000514,1.45e-11,43;CL:0000359,1.71e-10,32;CL:0000222,9.57e-10,121;CL:0002620,1.59e-09,23;CL:0002494,1.45e-08,16;CL:0002321,1.64e-08,250;CL:0002320,3.19e-08,361;CL:0002334,3.46e-08,12;CL:0000349,1.59e-07,19;CL:0000134,7.13e-07,354;CL:0000499,8.65e-07,28 | |||
|ontology_enrichment_development_v019=CL:0000355;8.18e-10;58!CL:0000514;1.79e-08;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!1.68e-20!143;UBERON:0000914!3.81e-18!83;UBERON:0002329!3.81e-18!83;UBERON:0003077!3.81e-18!83;UBERON:0003059!3.81e-18!83;UBERON:0007282!3.81e-18!83;UBERON:0009618!3.81e-18!83;UBERON:0007285!3.81e-18!83;UBERON:0003914!1.44e-17!118;UBERON:0004290!3.01e-16!70;UBERON:0004872!7.67e-16!84;UBERON:0000490!4.27e-15!138;UBERON:0001134!1.20e-14!61;UBERON:0002036!1.20e-14!61;UBERON:0003082!1.20e-14!61;UBERON:0002385!3.19e-14!63;UBERON:0001015!3.19e-14!63;UBERON:0000383!3.19e-14!63;UBERON:0002049!3.29e-14!79;UBERON:0007798!3.29e-14!79;UBERON:0000486!3.55e-14!82;UBERON:0002100!1.20e-13!216;UBERON:0004535!5.53e-12!110;UBERON:0001009!8.00e-12!113;UBERON:0000055!1.06e-11!69;UBERON:0001637!1.77e-11!42;UBERON:0003509!1.77e-11!42;UBERON:0004572!1.77e-11!42;UBERON:0001981!2.54e-11!60;UBERON:0007500!2.54e-11!60;UBERON:0004537!2.54e-11!60;UBERON:0006965!2.54e-11!60;UBERON:0003104!2.30e-09!238;UBERON:0009142!2.30e-09!238;UBERON:0004573!4.54e-09!33;UBERON:0004571!4.54e-09!33;UBERON:0000119!5.71e-09!312;UBERON:0000475!1.27e-08!365;UBERON:0000483!1.43e-08!309;UBERON:0000948!4.72e-08!24;UBERON:0005498!4.72e-08!24;UBERON:0004140!4.72e-08!24;UBERON:0009881!4.72e-08!24;UBERON:0004141!4.72e-08!24;UBERON:0003084!4.72e-08!24;UBERON:0007005!4.72e-08!24;UBERON:0004139!4.72e-08!24;UBERON:0004291!4.72e-08!24;UBERON:0000468!5.12e-08!659;UBERON:0002199!6.17e-08!45;UBERON:0002416!6.17e-08!45;UBERON:0007100!1.81e-07!27;UBERON:0000926!2.57e-07!448;UBERON:0004120!2.57e-07!448;UBERON:0006603!2.57e-07!448;UBERON:0003102!3.54e-07!95;UBERON:0000947!6.90e-07!21;UBERON:0010191!6.90e-07!21;UBERON:0001013!8.73e-07!14 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;5.92e-09;42!UBERON:0003509;5.92e-09;42!UBERON:0004572;5.92e-09;42!UBERON:0004573;1.04e-08;33!UBERON:0004571;1.04e-08;33!UBERON:0002384;3.62e-08;198!UBERON:0001013;4.24e-07;14!UBERON:0002385;7.90e-07;31!UBERON:0001015;7.90e-07;31!UBERON:0000383;7.90e-07;31!UBERON:0000947;8.20e-07;21!UBERON:0010191;8.20e-07;21 | |||
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| ||
|short_description=p27@FN1 | |||
}} | }} |
Latest revision as of 02:18, 20 September 2015
Short description: | p27@FN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_27_at_FN1_5end |
Coexpression cluster: | C79_chorionic_Chondrocyte_Cardiac_Smooth_Fibroblast_Preadipocyte_Mesenchymal |
Association with transcript: | 0bp_to_uc002vfk.1, uc010fva.1, uc010fvb.1_5end |
EntrezGene: | FN1 |
HGNC: | 3778 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 6.90e-25 | 76 |
multi fate stem cell | 3.26e-18 | 427 |
muscle precursor cell | 4.07e-18 | 58 |
myoblast | 4.07e-18 | 58 |
multi-potent skeletal muscle stem cell | 4.07e-18 | 58 |
somatic stem cell | 2.09e-17 | 433 |
muscle cell | 1.30e-16 | 55 |
stem cell | 1.80e-16 | 441 |
electrically responsive cell | 3.59e-13 | 61 |
electrically active cell | 3.59e-13 | 61 |
smooth muscle cell | 1.45e-11 | 43 |
smooth muscle myoblast | 1.45e-11 | 43 |
vascular associated smooth muscle cell | 1.71e-10 | 32 |
mesodermal cell | 9.57e-10 | 121 |
skin fibroblast | 1.59e-09 | 23 |
cardiocyte | 1.45e-08 | 16 |
embryonic cell | 1.64e-08 | 250 |
connective tissue cell | 3.19e-08 | 361 |
preadipocyte | 3.46e-08 | 12 |
extraembryonic cell | 1.59e-07 | 19 |
mesenchymal cell | 7.13e-07 | 354 |
stromal cell | 8.65e-07 | 28 |