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{{f5samples
{{f5samples
|id=FF:11323-117D9
|DRA_sample_Accession=CAGE@SAMD00005764
|name=Ciliary Epithelial Cells, donor2
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005764
|sample_id=11323
|accession_numbers=CAGE;DRX008207;DRR009079;DRZ000504;DRZ001889;DRZ011854;DRZ013239
|rna_tube_id=117D9
|accession_numbers_RNASeq=sRNA-Seq;DRX037213;DRR041579;DRZ007221
|rna_box=117
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000970,UBERON:0000019,UBERON:0000483,UBERON:0000033,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0000047,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000020,UBERON:0010371,UBERON:0002203,UBERON:0001768,UBERON:0000488,UBERON:0007625,UBERON:0001032,UBERON:0002049,UBERON:0002200,UBERON:0006876,UBERON:0010317,UBERON:0007798,UBERON:0001778,UBERON:0004088,UBERON:0000153,UBERON:0007811,UBERON:0004535,UBERON:0002104,UBERON:0001801,UBERON:0004456,UBERON:0001456,UBERON:0001775,UBERON:0010230,UBERON:0001009
|rna_position=D9
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000064,CL:0000075,CL:0000066,CL:0002371,CL:0000710,CL:0000255,CL:0002077,CL:0000067,CL:0005012,CL:0002304
|sample_cell_lot=N/A
|sample_cell_catalog=N/A
|sample_company=Sciencell/3H
|rna_lot_number=564
|rna_catalog_number=SC6585
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=fetus
|sample_tissue=eye
|sample_donor(cell lot)=
|sample_sex=unknown
|sample_age=fetal
|sample_ethnicity=unknown
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=ciliated epithelial cell
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_weight_ug=10
|rna_concentration=0.422
|sample_note=
|profile_hcage=CNhs11966,LSID836,release011,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10013,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000064,CL:0000066,CL:0000067,CL:0000075,CL:0000133,CL:0000144,CL:0000220,CL:0000221,CL:0000255,CL:0000548,CL:0000710,CL:0002077,CL:0002304,CL:0002321,CL:0002371,CL:0005012
|ancestors_in_anatomy_facet=UBERON:0000019,UBERON:0000020,UBERON:0000033,UBERON:0000047,UBERON:0000061,UBERON:0000062,UBERON:0000063,UBERON:0000064,UBERON:0000119,UBERON:0000153,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000483,UBERON:0000488,UBERON:0000970,UBERON:0001009,UBERON:0001032,UBERON:0001062,UBERON:0001444,UBERON:0001456,UBERON:0001768,UBERON:0001775,UBERON:0001778,UBERON:0001801,UBERON:0002049,UBERON:0002104,UBERON:0002200,UBERON:0002203,UBERON:0004456,UBERON:0004535,UBERON:0006876,UBERON:0007625,UBERON:0007798
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000040
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
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IL!0.75!5.32!SKIL;;chr2:5832493..5832507,+!p2@SOX11!0.75!4.66!SOX11;;chr3:147111198..147111225,+!p4@ZIC1!0.75!4.66!ZIC1;;chr3:181429704..181429722,+!p1@SOX2!0.75!4.66!SOX2;;chr19:49864746..49864780,-!p2@TEAD2!0.74!6.43!TEAD2;;chr6:43140095..43140145,+!p5@SRF!0.74!5.76!SRF;;chr5:92919068..92919082,+!p5@NR2F1!0.74!5.54!NR2F1;;chr1:164528687..164528711,+!p6@PBX1!0.74!5.32!PBX1;;chrX:84498989..84499003,+!p1@ZNF711!0.73!6.21!ZNF711;;chr9:16870659..16870675,-!p2@BNC2!0.72!5.32!BNC2;;chr5:92919375..92919438,+!p6@NR2F1!0.72!4.66!NR2F1;;chr2:45169179..45169190,+!p8@SIX3!0.72!4.21!SIX3;;chr3:25469815..25469866,+!p3@RARB!0.72!4.21!RARB;;chr16:86601052..86601066,+!p4@FOXC2!0.72!4.21!FOXC2;;chr12:66357214..66357233,+!p13@HMGA2!0.72!4.21!HMGA2;;chr2:60780607..60780624,-!p2@BCL11A!0.70!13.75!BCL11A;;chr6:45390025..45390076,+!p2@RUNX2!0.70!10.42!RUNX2;;chr11:61520075..61520136,+!p1@C11orf9!0.70!9.31!C11orf9;;chr8:60031682..60031710,-!p2@TOX!0.70!6.87!TOX;;chr6:45390300..45390335,+!p4@RUNX2!0.70!6.65!RUNX2;;chr19:53496768..53496799,-!p1@ZNF702P!0.70!6.65!ZNF702P;;chr11:31839453..31839462,-!p9@PAX6!0.70!3.99!PAX6;;chr9:126774058..126774081,+!p3@LHX2!0.70!3.99!LHX2;;chr3:12329397..12329433,+!p2@PPARG!0.69!9.76!PPARG;;chr3:71631382..71631413,-!p20@FOXP1!0.69!4.66!FOXP1;;chr3:71355163..71355209,-!p5@FOXP1!0.68!5.54!FOXP1;;chr7:14028488..14028516,-!p2@ETV1!0.68!4.21!ETV1;;chrX:136648297..136648319,+!p3@ZIC3!0.68!3.77!ZIC3;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.68!3.77!PEG3;;chr3:147127329..147127341,+!p7@ZIC1!0.68!3.77!ZIC1;;chr6:21593973..21593988,+!p1@SOX4!0.67!154.10!SOX4;;chr7:14029283..14029311,-!p1@ETV1!0.67!22.62!ETV1;;chr5:92920456..92920488,+!p9@NR2F1!0.67!4.43!NR2F1;;chr2:71127699..71127744,+!p1@VAX2!0.66!7.98!VAX2;;chr3:12330560..12330579,+!p1@PPARG!0.66!4.21!PPARG;;chr3:21792631..21792665,-!p3@ZNF385D!0.66!3.55!ZNF385D;;chr4:8873716..8873738,-!p2@HMX1!0.66!3.55!HMX1;;chr20:45142154..45142227,-!p1@ZNF334!0.65!7.54!ZNF334;;chr7:113726357..113726443,+!p1@FOXP2!0.65!6.43!FOXP2;;chr12:66218378..66218401,+!p6@HMGA2!0.65!5.76!HMGA2;;chr1:23696448..23696453,-!p5@ZNF436!0.65!4.43!ZNF436;;chr1:23696348..23696363,-!p4@ZNF436!0.65!3.99!ZNF436;;chr5:124082322..124082364,-!p1@ZNF608!0.64!9.76!ZNF608;;chr12:24715376..24715432,-!p1@SOX5!0.64!4.43!SOX5;;chr12:66358080..66358094,+!p15@HMGA2!0.64!3.33!HMGA2;;chr13:100634004..100634025,+!p2@ZIC2!0.64!3.33!ZIC2;;chr7:26191809..26191890,+!p1@NFE2L3!0.63!18.63!NFE2L3;;chr5:178368186..178368238,+!p1@ZNF454!0.63!6.43!ZNF454;;chr3:150126904..150126958,+!p7@TSC22D2!0.63!6.21!TSC22D2;;chr9:4299979..4299996,-!p3@GLIS3!0.63!5.76!GLIS3;;chr1:8926441..8926473,-!p10@ENO1!0.63!5.32!ENO1;;chrX:84499081..84499115,+!p2@ZNF711!0.63!5.10!ZNF711;;chr5:72744562..72744573,-!p3@FOXD1!0.63!4.21!FOXD1;;chr2:66662895..66662907,+!p3@MEIS1!0.63!4.21!MEIS1;;chr12:66218152..66218174,+!p10@HMGA2!0.63!3.55!HMGA2;;chr8:49833948..49833973,-!p2@SNAI2!0.62!23.50!SNAI2;;chr14:62162285..62162296,+!p3@HIF1A!0.62!19.29!HIF1A;;chr5:72744445..72744466,-!p2@FOXD1!0.62!5.76!FOXD1;;chr20:50721803..50721857,-!p2@ZFP64!0.62!5.32!ZFP64;;chr15:80696703..80696754,+!p1@ARNT2!0.62!4.43!ARNT2;;chr15:37392724..37392757,-!p1@MEIS2!0.61!16.41!MEIS2;;chr9:4300016..4300039,-!p2@GLIS3!0.61!5.76!GLIS3;;chr19:45260775..45260838,+!p5@BCL3!0.61!4.21!BCL3;;chr3:168865194..168865245,-!p3@MECOM!0.61!4.21!MECOM;;chr12:80083807..80083859,-!p11@PAWR!0.61!3.99!PAWR;;chr2:25475094..25475112,-!p3@DNMT3A!0.61!3.10!DNMT3A;;chrY:2803415..2803468,+!p1@ZFY!0.61!3.10!ZFY;;chr2:185463247..185463263,+!p1@ZNF804A!0.60!5.76!ZNF804A;;chr12:66218443..66218461,+!p8@HMGA2!0.60!3.99!HMGA2;;chr14:62162258..62162269,+!p2@HIF1A!0.59!33.48!HIF1A;;chr7:28725740..28725778,+!p1@CREB5!0.59!31.04!CREB5;;chr3:114343768..114343822,-!p1@ZBTB20!0.59!15.08!ZBTB20;;chr1:164528911..164528940,+!p7@PBX1!0.59!4.66!PBX1;;chr16:67881588..67881612,-!p2@CENPT!0.59!4.21!CENPT;;chr12:26278008..26278024,-!p4@BHLHE41!0.59!3.55!BHLHE41;;chr16:30406423..30406447,+!p4@ZNF48!0.59!2.88!ZNF48;;chr16:86600458..86600461,+!p3@FOXC2!0.59!2.88!FOXC2;;chr18:42260840..42260860,+!p2@SETBP1!0.59!2.88!SETBP1;;chr2:45169233..45169244,+!p10@SIX3!0.59!2.88!SIX3;;chr3:168865144..168865160,-!p6@MECOM!0.59!2.88!MECOM;;chr19:49865646..49865718,-!p1@TEAD2!0.57!28.82!TEAD2;;chr1:164528410..164528428,+!p1@PBX1!0.57!25.28!PBX1;;chr19:1592714..1592762,-!p1@MBD3!0.57!25.28!MBD3;;chr21:30671690..30671762,+!p2@BACH1!0.57!11.09!BACH1;;chr9:14083467..14083483,-!p4@NFIB!0.57!7.76!NFIB;;chr15:96869255..96869291,+!p6@NR2F2!0.57!5.54!NR2F2;;chr9:16870710..16870763,-!p1@BNC2!0.57!5.32!BNC2;;chr11:46299539..46299620,+!p2@CREB3L1!0.57!5.10!CREB3L1;;chr3:42947600..42947680,+!p1@ZNF662!0.57!4.21!ZNF662;;chr20:6748325..6748352,+!p1@BMP2!0.57!4.21!BMP2;;chr12:125002739..125002756,-!p6@NCOR2!0.56!4.21!NCOR2;;chr6:134210243..134210257,+!p1@TCF21!0.56!2.66!TCF21;;chr8:77593750..77593757,+!p3@ZFHX4!0.56!2.66!ZFHX4;;chr1:8934931..8934947,-!p4@ENO1!0.55!9.98!ENO1;;chr15:66994561..66994597,+!p2@SMAD6!0.55!7.10!SMAD6;;chr1:23696308..23696339,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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000067;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000710;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002077;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000970;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001768;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001801;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007625
|ffid_belonging_in_development=CL:0000133,CL:0000221
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 66: Line 43:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
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|rna_box=117
|rna_catalog_number=SC6585
|rna_concentration=0.422
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_lot_number=564
|rna_od260/230=
|rna_od260/280=
|rna_position=D9
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=117D9
|rna_weight_ug=10
|rnaseq_library_id=SRhi10013.CTTGTA
|sample_age=fetal
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_lot=N/A
|sample_cell_type=ciliated epithelial cell
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Sciencell/3H
|sample_description=
|sample_dev_stage=fetus
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=unknown
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;7.58432752374909e-247!GO:0005737;cytoplasm;1.30545873043972e-202!GO:0043226;organelle;1.21640324722851e-191!GO:0043229;intracellular organelle;1.80299482387429e-191!GO:0043231;intracellular membrane-bound organelle;4.90273474594507e-184!GO:0043227;membrane-bound organelle;1.41119022789752e-183!GO:0044422;organelle part;4.59986180025076e-144!GO:0044446;intracellular organelle part;9.70362517977185e-143!GO:0044444;cytoplasmic part;3.10093534545728e-131!GO:0032991;macromolecular complex;1.18089907315967e-97!GO:0030529;ribonucleoprotein complex;9.64320595445123e-88!GO:0044237;cellular metabolic process;1.81800774750152e-83!GO:0044238;primary metabolic process;2.01483812582546e-82!GO:0005515;protein binding;4.00958013605942e-81!GO:0043170;macromolecule metabolic process;6.23855371190287e-73!GO:0043233;organelle lumen;1.79626316562747e-71!GO:0031974;membrane-enclosed lumen;1.79626316562747e-71!GO:0005634;nucleus;4.25340601798662e-71!GO:0003723;RNA binding;3.13035525573884e-70!GO:0044428;nuclear part;8.63808352413864e-69!GO:0005739;mitochondrion;2.70680635176532e-66!GO:0016043;cellular component organization and biogenesis;9.5365770608972e-56!GO:0005840;ribosome;2.86953428853863e-55!GO:0031090;organelle membrane;8.01847696197656e-50!GO:0006412;translation;1.10522640015956e-49!GO:0043234;protein complex;1.10416283858938e-48!GO:0003735;structural constituent of ribosome;1.79949297425972e-48!GO:0019538;protein metabolic process;1.73032516892647e-47!GO:0006396;RNA processing;5.93343506505769e-46!GO:0044429;mitochondrial part;1.78926563455914e-44!GO:0033036;macromolecule localization;2.40991113361108e-44!GO:0009058;biosynthetic process;2.96429592426122e-44!GO:0015031;protein transport;1.61011713322082e-43!GO:0033279;ribosomal subunit;1.16226681730552e-42!GO:0044260;cellular macromolecule metabolic process;1.46687395923804e-42!GO:0044267;cellular protein metabolic process;6.10773487212111e-42!GO:0044249;cellular biosynthetic process;1.00053586666145e-41!GO:0031981;nuclear lumen;1.2787326731598e-41!GO:0043283;biopolymer metabolic process;1.92655625153947e-41!GO:0008104;protein localization;1.05546634834556e-40!GO:0031967;organelle envelope;2.95967920787045e-40!GO:0045184;establishment of protein localization;3.11766960322733e-40!GO:0031975;envelope;7.49796820115648e-40!GO:0005829;cytosol;1.98893634889104e-38!GO:0009059;macromolecule biosynthetic process;4.49712168125201e-38!GO:0043228;non-membrane-bound organelle;9.20507798345945e-38!GO:0043232;intracellular non-membrane-bound organelle;9.20507798345945e-38!GO:0046907;intracellular transport;3.91321430085263e-37!GO:0016071;mRNA metabolic process;4.99925070077362e-37!GO:0006996;organelle organization and biogenesis;5.89176899294662e-37!GO:0010467;gene expression;1.41610261023277e-36!GO:0008380;RNA splicing;1.24095351506155e-34!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.51287823765598e-34!GO:0065003;macromolecular complex assembly;1.16863774464015e-32!GO:0006397;mRNA processing;2.44357009429502e-31!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.02766182103461e-31!GO:0006886;intracellular protein transport;1.87317732272522e-30!GO:0022607;cellular component assembly;1.60736390770842e-29!GO:0005740;mitochondrial envelope;3.74577767511772e-28!GO:0022613;ribonucleoprotein complex biogenesis and assembly;6.76380488670716e-28!GO:0019866;organelle inner membrane;2.6894002168863e-27!GO:0031966;mitochondrial membrane;1.55189529393453e-26!GO:0006259;DNA metabolic process;6.83941538087151e-26!GO:0005654;nucleoplasm;2.05569851062694e-25!GO:0005743;mitochondrial inner membrane;2.3278061766532e-25!GO:0044445;cytosolic part;5.85237300398601e-25!GO:0005681;spliceosome;2.47921478847567e-24!GO:0051641;cellular localization;1.40033787265595e-23!GO:0051649;establishment of cellular localization;1.5069656829898e-23!GO:0000166;nucleotide binding;3.29074865167949e-23!GO:0006119;oxidative phosphorylation;5.97832307101961e-23!GO:0007049;cell cycle;1.71283376833848e-22!GO:0015935;small ribosomal subunit;4.32799717833804e-22!GO:0015934;large ribosomal subunit;1.12413390916125e-21!GO:0012505;endomembrane system;2.9523079886116e-21!GO:0044451;nucleoplasm part;1.20545134265044e-20!GO:0044455;mitochondrial membrane part;1.20545134265044e-20!GO:0003676;nucleic acid binding;6.24411658407289e-20!GO:0031980;mitochondrial lumen;1.45911952269868e-19!GO:0005759;mitochondrial matrix;1.45911952269868e-19!GO:0016462;pyrophosphatase activity;3.11589709291414e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.17183604639244e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;6.06121422562585e-19!GO:0006457;protein folding;2.38700324278802e-18!GO:0016874;ligase activity;2.41802157515358e-18!GO:0017111;nucleoside-triphosphatase activity;2.76415596954989e-18!GO:0005783;endoplasmic reticulum;1.2996923506644e-17!GO:0048770;pigment granule;1.45159669285666e-17!GO:0042470;melanosome;1.45159669285666e-17!GO:0005746;mitochondrial respiratory chain;1.60520342307392e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.82691050849537e-17!GO:0022402;cell cycle process;4.00536395125735e-17!GO:0022618;protein-RNA complex assembly;5.28019968839378e-17!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.30943919501519e-16!GO:0006512;ubiquitin cycle;2.32329115579741e-16!GO:0005794;Golgi apparatus;3.37823730667289e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;4.30591434727398e-16!GO:0000502;proteasome complex (sensu Eukaryota);4.88312653729085e-16!GO:0050136;NADH dehydrogenase (quinone) activity;5.68911733698792e-16!GO:0003954;NADH dehydrogenase activity;5.68911733698792e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;5.68911733698792e-16!GO:0005730;nucleolus;5.72658810496985e-16!GO:0019941;modification-dependent protein catabolic process;6.84793170615309e-16!GO:0043632;modification-dependent macromolecule catabolic process;6.84793170615309e-16!GO:0044265;cellular macromolecule catabolic process;7.55973460506744e-16!GO:0000278;mitotic cell cycle;7.9022110805876e-16!GO:0005761;mitochondrial ribosome;8.37431527237938e-16!GO:0000313;organellar ribosome;8.37431527237938e-16!GO:0006511;ubiquitin-dependent protein catabolic process;9.14619790304579e-16!GO:0032553;ribonucleotide binding;9.36465049630897e-16!GO:0032555;purine ribonucleotide binding;9.36465049630897e-16!GO:0044257;cellular protein catabolic process;1.11888072258875e-15!GO:0044432;endoplasmic reticulum part;1.29597035117421e-15!GO:0006605;protein targeting;3.11147377762221e-15!GO:0017076;purine nucleotide binding;3.71213711259557e-15!GO:0043285;biopolymer catabolic process;3.99962523125376e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.28032314846914e-15!GO:0008134;transcription factor binding;4.72344008411691e-15!GO:0051186;cofactor metabolic process;7.96805253447084e-15!GO:0048193;Golgi vesicle transport;1.45299243590469e-14!GO:0042775;organelle ATP synthesis coupled electron transport;3.3579598266704e-14!GO:0042773;ATP synthesis coupled electron transport;3.3579598266704e-14!GO:0030964;NADH dehydrogenase complex (quinone);4.13171723116568e-14!GO:0045271;respiratory chain complex I;4.13171723116568e-14!GO:0005747;mitochondrial respiratory chain complex I;4.13171723116568e-14!GO:0009057;macromolecule catabolic process;5.38688201732604e-14!GO:0008135;translation factor activity, nucleic acid binding;5.84182837719605e-14!GO:0016070;RNA metabolic process;5.95410847234909e-14!GO:0030163;protein catabolic process;6.60334067043245e-14!GO:0043412;biopolymer modification;1.1650330900065e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.39460708429175e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.58551512964515e-13!GO:0044248;cellular catabolic process;2.61576425784205e-13!GO:0006974;response to DNA damage stimulus;3.3931197606494e-13!GO:0051276;chromosome organization and biogenesis;3.85616741669518e-13!GO:0051082;unfolded protein binding;4.63819306219178e-13!GO:0005694;chromosome;6.36349801562612e-13!GO:0005635;nuclear envelope;9.08447946095815e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;9.42534869003062e-13!GO:0000375;RNA splicing, via transesterification reactions;9.42534869003062e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;9.42534869003062e-13!GO:0016192;vesicle-mediated transport;1.26340294418967e-12!GO:0031965;nuclear membrane;1.37745466072903e-12!GO:0005524;ATP binding;1.71329403247889e-12!GO:0006464;protein modification process;2.3911855304347e-12!GO:0006732;coenzyme metabolic process;2.71406090251488e-12!GO:0032559;adenyl ribonucleotide binding;3.11133317621952e-12!GO:0044427;chromosomal part;5.01427356008359e-12!GO:0042254;ribosome biogenesis and assembly;1.07497923660999e-11!GO:0006325;establishment and/or maintenance of chromatin architecture;1.11232678357552e-11!GO:0009055;electron carrier activity;1.29462705146398e-11!GO:0030554;adenyl nucleotide binding;1.4789252154395e-11!GO:0022403;cell cycle phase;1.52122238044816e-11!GO:0000087;M phase of mitotic cell cycle;3.53772342901663e-11!GO:0003743;translation initiation factor activity;3.57464777539582e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.70251690294231e-11!GO:0044453;nuclear membrane part;3.95753871479602e-11!GO:0006323;DNA packaging;5.1155855255429e-11!GO:0007067;mitosis;5.28749472675778e-11!GO:0006281;DNA repair;6.65044518615255e-11!GO:0005789;endoplasmic reticulum membrane;7.33694673397509e-11!GO:0006413;translational initiation;8.85751574720861e-11!GO:0016604;nuclear body;1.14294551097732e-10!GO:0043687;post-translational protein modification;1.15591807140838e-10!GO:0051301;cell division;1.83838668703301e-10!GO:0048523;negative regulation of cellular process;1.95943421381056e-10!GO:0000074;regulation of progression through cell cycle;2.13096153142937e-10!GO:0006913;nucleocytoplasmic transport;2.15497148757073e-10!GO:0051726;regulation of cell cycle;2.15497148757073e-10!GO:0009259;ribonucleotide metabolic process;3.75263737073273e-10!GO:0051169;nuclear transport;5.24178528047404e-10!GO:0005793;ER-Golgi intermediate compartment;5.63214977969584e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;7.46886389529854e-10!GO:0065004;protein-DNA complex assembly;1.03164037912543e-09!GO:0006446;regulation of translational initiation;1.17062525803373e-09!GO:0006163;purine nucleotide metabolic process;1.18138054862063e-09!GO:0042623;ATPase activity, coupled;1.48229165387878e-09!GO:0008565;protein transporter activity;1.82279090760309e-09!GO:0016887;ATPase activity;1.97592185174776e-09!GO:0012501;programmed cell death;2.07507585697713e-09!GO:0008639;small protein conjugating enzyme activity;2.21035974196381e-09!GO:0003712;transcription cofactor activity;2.61204201083937e-09!GO:0004842;ubiquitin-protein ligase activity;3.0676891965014e-09!GO:0009719;response to endogenous stimulus;3.16828473871198e-09!GO:0004386;helicase activity;3.41668186224767e-09!GO:0006333;chromatin assembly or disassembly;3.50187562899262e-09!GO:0006164;purine nucleotide biosynthetic process;3.58059609313338e-09!GO:0009150;purine ribonucleotide metabolic process;3.58420594838105e-09!GO:0005643;nuclear pore;3.7032323069728e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.81512502298961e-09!GO:0006915;apoptosis;3.81557357509843e-09!GO:0006461;protein complex assembly;3.86628887367768e-09!GO:0016607;nuclear speck;4.20752271695961e-09!GO:0006399;tRNA metabolic process;4.39687079578295e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.69308505007025e-09!GO:0009260;ribonucleotide biosynthetic process;4.70225218335572e-09!GO:0009060;aerobic respiration;4.76203728118801e-09!GO:0006260;DNA replication;5.21651224833818e-09!GO:0030120;vesicle coat;6.15523417758597e-09!GO:0030662;coated vesicle membrane;6.15523417758597e-09!GO:0048475;coated membrane;7.74560055032188e-09!GO:0030117;membrane coat;7.74560055032188e-09!GO:0000785;chromatin;8.60698007396203e-09!GO:0019787;small conjugating protein ligase activity;8.60698007396203e-09!GO:0009152;purine ribonucleotide biosynthetic process;1.04275188166596e-08!GO:0048519;negative regulation of biological process;1.11565146587785e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.14031489305459e-08!GO:0008219;cell death;1.48658769344975e-08!GO:0016265;death;1.48658769344975e-08!GO:0000279;M phase;1.54314797525172e-08!GO:0015630;microtubule cytoskeleton;2.12268491158931e-08!GO:0045333;cellular respiration;2.80604396674832e-08!GO:0065002;intracellular protein transport across a membrane;2.93948163265575e-08!GO:0051188;cofactor biosynthetic process;3.69350747356125e-08!GO:0017038;protein import;3.79917989756779e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.79917989756779e-08!GO:0004812;aminoacyl-tRNA ligase activity;3.79917989756779e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.79917989756779e-08!GO:0006888;ER to Golgi vesicle-mediated transport;3.81551373264755e-08!GO:0015986;ATP synthesis coupled proton transport;4.21345478847049e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.21345478847049e-08!GO:0006334;nucleosome assembly;4.4615845077447e-08!GO:0006403;RNA localization;4.81267837277433e-08!GO:0009141;nucleoside triphosphate metabolic process;5.5621322594492e-08!GO:0016881;acid-amino acid ligase activity;6.07134395214431e-08!GO:0030532;small nuclear ribonucleoprotein complex;6.07134395214431e-08!GO:0009199;ribonucleoside triphosphate metabolic process;6.15666496784177e-08!GO:0050657;nucleic acid transport;7.0055368116727e-08!GO:0051236;establishment of RNA localization;7.0055368116727e-08!GO:0050658;RNA transport;7.0055368116727e-08!GO:0009056;catabolic process;7.11952524442363e-08!GO:0009142;nucleoside triphosphate biosynthetic process;7.57714115784457e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;7.57714115784457e-08!GO:0043038;amino acid activation;7.57714115784457e-08!GO:0006418;tRNA aminoacylation for protein translation;7.57714115784457e-08!GO:0043039;tRNA aminoacylation;7.57714115784457e-08!GO:0006364;rRNA processing;8.31555328176277e-08!GO:0008026;ATP-dependent helicase activity;9.65311959099596e-08!GO:0003924;GTPase activity;1.00532523811276e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.02117328027437e-07!GO:0009144;purine nucleoside triphosphate metabolic process;1.02117328027437e-07!GO:0019829;cation-transporting ATPase activity;1.03637103647363e-07!GO:0007005;mitochondrion organization and biogenesis;1.14175573613474e-07!GO:0050794;regulation of cellular process;1.29197535127745e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.30157075888423e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.30157075888423e-07!GO:0006366;transcription from RNA polymerase II promoter;1.83088309706603e-07!GO:0016072;rRNA metabolic process;2.03349615726109e-07!GO:0009117;nucleotide metabolic process;2.19216846664334e-07!GO:0031497;chromatin assembly;2.52691321200849e-07!GO:0044431;Golgi apparatus part;2.84201045729612e-07!GO:0005768;endosome;3.33164281344175e-07!GO:0046930;pore complex;3.37517257542071e-07!GO:0043566;structure-specific DNA binding;3.50953814829146e-07!GO:0006099;tricarboxylic acid cycle;3.54419350329958e-07!GO:0046356;acetyl-CoA catabolic process;3.54419350329958e-07!GO:0051246;regulation of protein metabolic process;5.58716414045531e-07!GO:0007010;cytoskeleton organization and biogenesis;5.96374773123971e-07!GO:0016023;cytoplasmic membrane-bound vesicle;6.42435179555322e-07!GO:0006793;phosphorus metabolic process;6.81064383389921e-07!GO:0006796;phosphate metabolic process;6.81064383389921e-07!GO:0016469;proton-transporting two-sector ATPase complex;7.11862313878706e-07!GO:0046034;ATP metabolic process;7.18222586317848e-07!GO:0006084;acetyl-CoA metabolic process;7.24264122352177e-07!GO:0006754;ATP biosynthetic process;7.29304764889509e-07!GO:0006753;nucleoside phosphate metabolic process;7.29304764889509e-07!GO:0031988;membrane-bound vesicle;7.5212752259117e-07!GO:0005839;proteasome core complex (sensu Eukaryota);7.5212752259117e-07!GO:0005788;endoplasmic reticulum lumen;7.55960125536996e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.01891907024459e-06!GO:0003697;single-stranded DNA binding;1.10125535281163e-06!GO:0045259;proton-transporting ATP synthase complex;1.27040033671668e-06!GO:0016853;isomerase activity;1.43615615101543e-06!GO:0045786;negative regulation of progression through cell cycle;1.5696241597564e-06!GO:0031324;negative regulation of cellular metabolic process;2.03356605560857e-06!GO:0005667;transcription factor complex;2.12530664714044e-06!GO:0009108;coenzyme biosynthetic process;2.12645195929841e-06!GO:0015078;hydrogen ion transmembrane transporter activity;2.12645195929841e-06!GO:0016740;transferase activity;2.19686336338363e-06!GO:0031252;leading edge;2.40443904007559e-06!GO:0051028;mRNA transport;2.46815677757242e-06!GO:0032446;protein modification by small protein conjugation;2.75729476197569e-06!GO:0005762;mitochondrial large ribosomal subunit;3.13677606802772e-06!GO:0000315;organellar large ribosomal subunit;3.13677606802772e-06!GO:0009109;coenzyme catabolic process;3.35519509969243e-06!GO:0043067;regulation of programmed cell death;3.65180563133002e-06!GO:0006752;group transfer coenzyme metabolic process;3.89815621750469e-06!GO:0016568;chromatin modification;4.13932253320196e-06!GO:0042981;regulation of apoptosis;4.51707011062177e-06!GO:0016567;protein ubiquitination;4.55703883161101e-06!GO:0004298;threonine endopeptidase activity;5.0777134218039e-06!GO:0016126;sterol biosynthetic process;5.22220537219152e-06!GO:0016310;phosphorylation;5.24407845011708e-06!GO:0000245;spliceosome assembly;5.28914230092622e-06!GO:0005798;Golgi-associated vesicle;5.7415347540804e-06!GO:0031410;cytoplasmic vesicle;5.98423949381075e-06!GO:0005525;GTP binding;6.13793574108604e-06!GO:0031982;vesicle;6.3704260241298e-06!GO:0009892;negative regulation of metabolic process;6.43329297533943e-06!GO:0043069;negative regulation of programmed cell death;6.49660240217881e-06!GO:0050789;regulation of biological process;6.66416307761988e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;7.11022877720664e-06!GO:0030036;actin cytoskeleton organization and biogenesis;7.35907959798915e-06!GO:0016564;transcription repressor activity;8.09499034374982e-06!GO:0016491;oxidoreductase activity;8.58535766085033e-06!GO:0051187;cofactor catabolic process;8.85185726114727e-06!GO:0006613;cotranslational protein targeting to membrane;9.19708342929771e-06!GO:0003714;transcription corepressor activity;9.74338938106253e-06!GO:0008092;cytoskeletal protein binding;1.08014282913751e-05!GO:0051170;nuclear import;1.11638879319874e-05!GO:0051329;interphase of mitotic cell cycle;1.22419976642373e-05!GO:0043623;cellular protein complex assembly;1.32580707938132e-05!GO:0043066;negative regulation of apoptosis;1.4148493469673e-05!GO:0051325;interphase;1.44997157080214e-05!GO:0016859;cis-trans isomerase activity;1.52210048154795e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;1.54914942790047e-05!GO:0006695;cholesterol biosynthetic process;1.80133130455844e-05!GO:0006606;protein import into nucleus;2.10742000201737e-05!GO:0000139;Golgi membrane;2.32558989429379e-05!GO:0006916;anti-apoptosis;2.60065132410109e-05!GO:0000151;ubiquitin ligase complex;2.8135142529117e-05!GO:0015980;energy derivation by oxidation of organic compounds;3.0681667497824e-05!GO:0005905;coated pit;3.21264090299716e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.24353738231149e-05!GO:0019899;enzyme binding;3.45107827705468e-05!GO:0005813;centrosome;3.72746024877239e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.73613419477405e-05!GO:0003724;RNA helicase activity;4.09832636611257e-05!GO:0032561;guanyl ribonucleotide binding;4.38234380696628e-05!GO:0019001;guanyl nucleotide binding;4.38234380696628e-05!GO:0005819;spindle;4.57201984146548e-05!GO:0008654;phospholipid biosynthetic process;4.88456076310547e-05!GO:0016787;hydrolase activity;5.17431952877238e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;5.70926450922156e-05!GO:0030029;actin filament-based process;5.76053761596168e-05!GO:0000314;organellar small ribosomal subunit;6.50451431405319e-05!GO:0005763;mitochondrial small ribosomal subunit;6.50451431405319e-05!GO:0008361;regulation of cell size;6.55459676298508e-05!GO:0044440;endosomal part;7.12945982195777e-05!GO:0010008;endosome membrane;7.12945982195777e-05!GO:0030133;transport vesicle;7.45571780736276e-05!GO:0016049;cell growth;7.6634985987832e-05!GO:0030867;rough endoplasmic reticulum membrane;7.92098984460574e-05!GO:0016481;negative regulation of transcription;8.45025906277252e-05!GO:0019843;rRNA binding;9.76687721534995e-05!GO:0030118;clathrin coat;9.78513466927806e-05!GO:0005815;microtubule organizing center;9.99800376356734e-05!GO:0045454;cell redox homeostasis;0.000100070634787659!GO:0051427;hormone receptor binding;0.000100953799941938!GO:0001558;regulation of cell growth;0.000107337507688488!GO:0043021;ribonucleoprotein binding;0.000108950941476869!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000133591433662998!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000137752809875643!GO:0005770;late endosome;0.000145046074745729!GO:0003713;transcription coactivator activity;0.00015560220006263!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000157833241355106!GO:0016563;transcription activator activity;0.000172011640822598!GO:0005791;rough endoplasmic reticulum;0.000175935290467059!GO:0035257;nuclear hormone receptor binding;0.00021419141590227!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000216423737762203!GO:0016779;nucleotidyltransferase activity;0.000216423737762203!GO:0007264;small GTPase mediated signal transduction;0.000223082991488228!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000230469400605017!GO:0005048;signal sequence binding;0.000240550128857966!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000266377937905072!GO:0005885;Arp2/3 protein complex;0.000273945635893004!GO:0005769;early endosome;0.000276499907968828!GO:0033116;ER-Golgi intermediate compartment membrane;0.000292021837978237!GO:0048471;perinuclear region of cytoplasm;0.00031620095088384!GO:0009165;nucleotide biosynthetic process;0.00031769300539979!GO:0030658;transport vesicle membrane;0.000322227591838272!GO:0016363;nuclear matrix;0.000340294728977668!GO:0051168;nuclear export;0.000343719179711737!GO:0008610;lipid biosynthetic process;0.000348788462380229!GO:0003729;mRNA binding;0.000368738787260922!GO:0006414;translational elongation;0.00038332654361173!GO:0006612;protein targeting to membrane;0.000387495500194065!GO:0006091;generation of precursor metabolites and energy;0.00042336370418311!GO:0008250;oligosaccharyl transferase complex;0.000430791523732256!GO:0043681;protein import into mitochondrion;0.000435119439561049!GO:0006839;mitochondrial transport;0.000435528363535855!GO:0000075;cell cycle checkpoint;0.000439963818438914!GO:0007051;spindle organization and biogenesis;0.000440801927506761!GO:0006626;protein targeting to mitochondrion;0.000443648802216078!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000486239080137389!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000499978340178719!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000574799364087421!GO:0004576;oligosaccharyl transferase activity;0.000593959470879648!GO:0006261;DNA-dependent DNA replication;0.00063977198109408!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000640232839313303!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000654500241932338!GO:0051920;peroxiredoxin activity;0.000673557744594175!GO:0051789;response to protein stimulus;0.00071182485677971!GO:0006986;response to unfolded protein;0.00071182485677971!GO:0005874;microtubule;0.000728812511921824!GO:0003899;DNA-directed RNA polymerase activity;0.000757220719392611!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00082896296992043!GO:0008186;RNA-dependent ATPase activity;0.000838338900233427!GO:0000786;nucleosome;0.000952596959140195!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00101623870958144!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00101623870958144!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00101623870958144!GO:0031968;organelle outer membrane;0.00103600195297448!GO:0003690;double-stranded DNA binding;0.00103600195297448!GO:0030119;AP-type membrane coat adaptor complex;0.00109529441706943!GO:0019867;outer membrane;0.00124006644948259!GO:0030660;Golgi-associated vesicle membrane;0.0012712943655239!GO:0001726;ruffle;0.00134759856864034!GO:0030663;COPI coated vesicle membrane;0.00137638719368202!GO:0030126;COPI vesicle coat;0.00137638719368202!GO:0007050;cell cycle arrest;0.00139037307620747!GO:0000775;chromosome, pericentric region;0.00140651322732774!GO:0006891;intra-Golgi vesicle-mediated transport;0.00142386148211229!GO:0018196;peptidyl-asparagine modification;0.00143630105643068!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00143630105643068!GO:0000059;protein import into nucleus, docking;0.00153024578884687!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00153654591724672!GO:0030132;clathrin coat of coated pit;0.00156245361128964!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00157980918727978!GO:0042802;identical protein binding;0.00160433391057622!GO:0030131;clathrin adaptor complex;0.00168913115404659!GO:0006402;mRNA catabolic process;0.00175388827694178!GO:0016044;membrane organization and biogenesis;0.00186353273489445!GO:0006383;transcription from RNA polymerase III promoter;0.00188988303538326!GO:0048500;signal recognition particle;0.0019056261827305!GO:0065009;regulation of a molecular function;0.00207289893527275!GO:0030125;clathrin vesicle coat;0.00212211949070982!GO:0030665;clathrin coated vesicle membrane;0.00212211949070982!GO:0043284;biopolymer biosynthetic process;0.0022556955415052!GO:0005741;mitochondrial outer membrane;0.00229662519204378!GO:0004004;ATP-dependent RNA helicase activity;0.00232728642399187!GO:0005773;vacuole;0.00239858247871971!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00247008250922024!GO:0007243;protein kinase cascade;0.0026330860524115!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0026562343046457!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0026562343046457!GO:0046474;glycerophospholipid biosynthetic process;0.00274051490455688!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00279702610447546!GO:0007006;mitochondrial membrane organization and biogenesis;0.00279702610447546!GO:0040008;regulation of growth;0.00292627696721917!GO:0030137;COPI-coated vesicle;0.0032669761107418!GO:0030659;cytoplasmic vesicle membrane;0.00328734705495331!GO:0008286;insulin receptor signaling pathway;0.0033855481293342!GO:0007093;mitotic cell cycle checkpoint;0.00340575328373018!GO:0019222;regulation of metabolic process;0.00344207074940844!GO:0046467;membrane lipid biosynthetic process;0.00362297800527674!GO:0051252;regulation of RNA metabolic process;0.00379423319836923!GO:0015631;tubulin binding;0.00379813824597155!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00400364420994313!GO:0003684;damaged DNA binding;0.00424570908150175!GO:0031072;heat shock protein binding;0.00432627704597667!GO:0030134;ER to Golgi transport vesicle;0.00432627704597667!GO:0008312;7S RNA binding;0.00437369172952904!GO:0030176;integral to endoplasmic reticulum membrane;0.00440369371984732!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00458177088688775!GO:0045047;protein targeting to ER;0.00458177088688775!GO:0033673;negative regulation of kinase activity;0.00458177088688775!GO:0006469;negative regulation of protein kinase activity;0.00458177088688775!GO:0048468;cell development;0.00459466972912004!GO:0005869;dynactin complex;0.00474233456252253!GO:0008139;nuclear localization sequence binding;0.00485838368276176!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00487065624234434!GO:0015399;primary active transmembrane transporter activity;0.00487065624234434!GO:0030027;lamellipodium;0.00487065624234434!GO:0003779;actin binding;0.00487065624234434!GO:0003682;chromatin binding;0.00487065624234434!GO:0008094;DNA-dependent ATPase activity;0.00497469198807227!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00517871727415457!GO:0030127;COPII vesicle coat;0.00522737707238631!GO:0012507;ER to Golgi transport vesicle membrane;0.00522737707238631!GO:0016197;endosome transport;0.00560728608947124!GO:0006595;polyamine metabolic process;0.00563148536224511!GO:0017166;vinculin binding;0.0056685427257487!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0059262790477238!GO:0000776;kinetochore;0.0059753840072554!GO:0044433;cytoplasmic vesicle part;0.00597681693602737!GO:0006720;isoprenoid metabolic process;0.00609933972931707!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00626966956175356!GO:0008047;enzyme activator activity;0.00626966956175356!GO:0005657;replication fork;0.00642817855910867!GO:0005684;U2-dependent spliceosome;0.00648272258941802!GO:0051348;negative regulation of transferase activity;0.00653871094167692!GO:0051128;regulation of cellular component organization and biogenesis;0.00657483428726377!GO:0007265;Ras protein signal transduction;0.00662311050922493!GO:0051287;NAD binding;0.00662765238790154!GO:0005637;nuclear inner membrane;0.00665645803592413!GO:0008033;tRNA processing;0.00683618609379383!GO:0048487;beta-tubulin binding;0.00694779590163336!GO:0004674;protein serine/threonine kinase activity;0.00709630581829802!GO:0003711;transcription elongation regulator activity;0.00742846225739294!GO:0008180;signalosome;0.00758800385149368!GO:0006401;RNA catabolic process;0.00796701957518!GO:0003678;DNA helicase activity;0.00811161482061848!GO:0043488;regulation of mRNA stability;0.00825427720343364!GO:0043487;regulation of RNA stability;0.00825427720343364!GO:0045045;secretory pathway;0.0083099634313845!GO:0030880;RNA polymerase complex;0.0085057541001403!GO:0015992;proton transport;0.0085057541001403!GO:0000902;cell morphogenesis;0.00892045810355775!GO:0032989;cellular structure morphogenesis;0.00892045810355775!GO:0006740;NADPH regeneration;0.00896197371380013!GO:0006098;pentose-phosphate shunt;0.00896197371380013!GO:0006818;hydrogen transport;0.00919367557852551!GO:0006509;membrane protein ectodomain proteolysis;0.00943376554203342!GO:0033619;membrane protein proteolysis;0.00943376554203342!GO:0019798;procollagen-proline dioxygenase activity;0.00943804133207785!GO:0008168;methyltransferase activity;0.00945779657393668!GO:0016408;C-acyltransferase activity;0.00948243334329394!GO:0044452;nucleolar part;0.00955177027899009!GO:0016272;prefoldin complex;0.00963675919775775!GO:0045892;negative regulation of transcription, DNA-dependent;0.00990357795973415!GO:0044262;cellular carbohydrate metabolic process;0.00991351722810982!GO:0043022;ribosome binding;0.0100442138313577!GO:0031124;mRNA 3'-end processing;0.0104987769207894!GO:0007088;regulation of mitosis;0.0105438051870609!GO:0016741;transferase activity, transferring one-carbon groups;0.0105698667543514!GO:0000323;lytic vacuole;0.0105698667543514!GO:0005764;lysosome;0.0105698667543514!GO:0051087;chaperone binding;0.0105915949267407!GO:0065007;biological regulation;0.0108240856495837!GO:0006352;transcription initiation;0.0117739768761861!GO:0006650;glycerophospholipid metabolic process;0.0117749171174324!GO:0045893;positive regulation of transcription, DNA-dependent;0.0119853104830529!GO:0046489;phosphoinositide biosynthetic process;0.0121380177176053!GO:0005862;muscle thin filament tropomyosin;0.012496257834424!GO:0012506;vesicle membrane;0.0130696121782949!GO:0005083;small GTPase regulator activity;0.0132134957864614!GO:0016584;nucleosome positioning;0.0133545030689008!GO:0007052;mitotic spindle organization and biogenesis;0.0133776515603056!GO:0048522;positive regulation of cellular process;0.0133776515603056!GO:0005832;chaperonin-containing T-complex;0.0134352368227104!GO:0006302;double-strand break repair;0.0136602193847349!GO:0031901;early endosome membrane;0.0139659031370558!GO:0006611;protein export from nucleus;0.0139769921297436!GO:0000082;G1/S transition of mitotic cell cycle;0.0141762694471946!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0141762694471946!GO:0015002;heme-copper terminal oxidase activity;0.0141762694471946!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0141762694471946!GO:0004129;cytochrome-c oxidase activity;0.0141762694471946!GO:0000792;heterochromatin;0.0142756731185941!GO:0031543;peptidyl-proline dioxygenase activity;0.0147676265189092!GO:0000209;protein polyubiquitination;0.0148164186813626!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0149646002434618!GO:0016125;sterol metabolic process;0.0149995391519486!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0150553071132324!GO:0000086;G2/M transition of mitotic cell cycle;0.0152033360800225!GO:0007017;microtubule-based process;0.0157287168474405!GO:0030521;androgen receptor signaling pathway;0.0157371081642197!GO:0009116;nucleoside metabolic process;0.0158443826712191!GO:0006892;post-Golgi vesicle-mediated transport;0.0159566616870025!GO:0035258;steroid hormone receptor binding;0.0162611725585367!GO:0000049;tRNA binding;0.0163857790464306!GO:0008022;protein C-terminus binding;0.0168174736337543!GO:0008632;apoptotic program;0.0169622730056987!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.017054228179755!GO:0000428;DNA-directed RNA polymerase complex;0.017054228179755!GO:0006144;purine base metabolic process;0.017405551969809!GO:0046483;heterocycle metabolic process;0.0174202953644404!GO:0031625;ubiquitin protein ligase binding;0.0174987737742099!GO:0006520;amino acid metabolic process;0.0179208257368564!GO:0031529;ruffle organization and biogenesis;0.0179212733741079!GO:0019752;carboxylic acid metabolic process;0.0182007475316158!GO:0051052;regulation of DNA metabolic process;0.0182765743807364!GO:0030145;manganese ion binding;0.018504987133408!GO:0006082;organic acid metabolic process;0.0186282640700953!GO:0000339;RNA cap binding;0.0189344851497744!GO:0006289;nucleotide-excision repair;0.0191069677860769!GO:0032508;DNA duplex unwinding;0.019374630003786!GO:0032392;DNA geometric change;0.019374630003786!GO:0051101;regulation of DNA binding;0.0205032223935712!GO:0003746;translation elongation factor activity;0.0205142035265104!GO:0045936;negative regulation of phosphate metabolic process;0.020681905055378!GO:0006672;ceramide metabolic process;0.0209420710573581!GO:0022890;inorganic cation transmembrane transporter activity;0.0213234859227688!GO:0000118;histone deacetylase complex;0.0213682927499176!GO:0046519;sphingoid metabolic process;0.0224031526327684!GO:0016860;intramolecular oxidoreductase activity;0.0225308216717224!GO:0043492;ATPase activity, coupled to movement of substances;0.0225308216717224!GO:0051539;4 iron, 4 sulfur cluster binding;0.0225308216717224!GO:0051059;NF-kappaB binding;0.0226258611602597!GO:0045941;positive regulation of transcription;0.0232292594809183!GO:0032906;transforming growth factor-beta2 production;0.0238792555694749!GO:0032909;regulation of transforming growth factor-beta2 production;0.0238792555694749!GO:0045792;negative regulation of cell size;0.0238851404307021!GO:0007569;cell aging;0.0239288784804729!GO:0006310;DNA recombination;0.0240098137184954!GO:0006405;RNA export from nucleus;0.0240460599789901!GO:0030032;lamellipodium biogenesis;0.0244593856759333!GO:0040029;regulation of gene expression, epigenetic;0.0248134757251564!GO:0050790;regulation of catalytic activity;0.0248174257122825!GO:0008287;protein serine/threonine phosphatase complex;0.0248174257122825!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0248174257122825!GO:0030308;negative regulation of cell growth;0.0251684327655801!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0254002898812512!GO:0031575;G1/S transition checkpoint;0.0254819101971205!GO:0030384;phosphoinositide metabolic process;0.0255800107309768!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0259094832345134!GO:0005096;GTPase activator activity;0.0260879334284971!GO:0006376;mRNA splice site selection;0.0261935558094039!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0261935558094039!GO:0043624;cellular protein complex disassembly;0.0263648487202977!GO:0007021;tubulin folding;0.0265734494202112!GO:0050662;coenzyme binding;0.0273634849247025!GO:0050811;GABA receptor binding;0.0273761830147039!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0276898197524748!GO:0006284;base-excision repair;0.0281057532945355!GO:0006268;DNA unwinding during replication;0.0283054433808111!GO:0006979;response to oxidative stress;0.0284294534943473!GO:0051098;regulation of binding;0.028453148017823!GO:0009112;nucleobase metabolic process;0.028453148017823!GO:0051272;positive regulation of cell motility;0.0286021003915445!GO:0040017;positive regulation of locomotion;0.0286021003915445!GO:0006779;porphyrin biosynthetic process;0.0286682307728133!GO:0033014;tetrapyrrole biosynthetic process;0.0286682307728133!GO:0006643;membrane lipid metabolic process;0.0287332480379685!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0292066851729577!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0292066851729577!GO:0007266;Rho protein signal transduction;0.0311927417617693!GO:0050750;low-density lipoprotein receptor binding;0.0311927417617693!GO:0032984;macromolecular complex disassembly;0.0317317105067837!GO:0051338;regulation of transferase activity;0.032100613515689!GO:0045334;clathrin-coated endocytic vesicle;0.0322435162593827!GO:0008538;proteasome activator activity;0.0325100314371485!GO:0004860;protein kinase inhibitor activity;0.0329013262794179!GO:0051540;metal cluster binding;0.0331894233110625!GO:0051536;iron-sulfur cluster binding;0.0331894233110625!GO:0005876;spindle microtubule;0.0337860759512427!GO:0043086;negative regulation of catalytic activity;0.0338255322691765!GO:0006007;glucose catabolic process;0.0338799261476547!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0338799261476547!GO:0031970;organelle envelope lumen;0.0340425350738006!GO:0006338;chromatin remodeling;0.0341325871748623!GO:0009081;branched chain family amino acid metabolic process;0.0343279215548269!GO:0050178;phenylpyruvate tautomerase activity;0.0348692123270486!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0348734502556137!GO:0033043;regulation of organelle organization and biogenesis;0.0348734502556137!GO:0043130;ubiquitin binding;0.0358592057896498!GO:0032182;small conjugating protein binding;0.0358592057896498!GO:0006739;NADP metabolic process;0.0361865735944004!GO:0031123;RNA 3'-end processing;0.036249325474143!GO:0030128;clathrin coat of endocytic vesicle;0.0366304405803385!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0366304405803385!GO:0030122;AP-2 adaptor complex;0.0366304405803385!GO:0008097;5S rRNA binding;0.0366304405803385!GO:0006778;porphyrin metabolic process;0.0366304405803385!GO:0033013;tetrapyrrole metabolic process;0.0366304405803385!GO:0005784;translocon complex;0.0369253203919378!GO:0030140;trans-Golgi network transport vesicle;0.0371043169829198!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0373851244516813!GO:0000096;sulfur amino acid metabolic process;0.0379525103347235!GO:0006220;pyrimidine nucleotide metabolic process;0.0380065134813612!GO:0008299;isoprenoid biosynthetic process;0.0388280343823006!GO:0016251;general RNA polymerase II transcription factor activity;0.0390171358794981!GO:0006607;NLS-bearing substrate import into nucleus;0.0397383818921322!GO:0008154;actin polymerization and/or depolymerization;0.0398614394161769!GO:0005856;cytoskeleton;0.0401783089587716!GO:0001952;regulation of cell-matrix adhesion;0.0402453902756679!GO:0043034;costamere;0.0403591920614681!GO:0009303;rRNA transcription;0.0406315449552124!GO:0006733;oxidoreduction coenzyme metabolic process;0.0409299743448405!GO:0051270;regulation of cell motility;0.0414063335352819!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0414063335352819!GO:0030911;TPR domain binding;0.0415006808017546!GO:0030496;midbody;0.0416287401382105!GO:0022415;viral reproductive process;0.0419243367138681!GO:0043495;protein anchor;0.0420065289239397!GO:0006417;regulation of translation;0.0420065289239397!GO:0008637;apoptotic mitochondrial changes;0.0423227488167915!GO:0050681;androgen receptor binding;0.0423730899927001!GO:0031371;ubiquitin conjugating enzyme complex;0.0424272854336367!GO:0048144;fibroblast proliferation;0.0425405857594516!GO:0048145;regulation of fibroblast proliferation;0.0425405857594516!GO:0046966;thyroid hormone receptor binding;0.0425660223357562!GO:0022408;negative regulation of cell-cell adhesion;0.0426052218720982!GO:0006378;mRNA polyadenylation;0.0426641857747218!GO:0007030;Golgi organization and biogenesis;0.0431320888498751!GO:0005669;transcription factor TFIID complex;0.0435043312109097!GO:0007346;regulation of progression through mitotic cell cycle;0.0435043312109097!GO:0046822;regulation of nucleocytoplasmic transport;0.043801267436587!GO:0004177;aminopeptidase activity;0.0441146353116383!GO:0007040;lysosome organization and biogenesis;0.0441146353116383!GO:0046128;purine ribonucleoside metabolic process;0.0445118958650094!GO:0042278;purine nucleoside metabolic process;0.0445118958650094!GO:0016311;dephosphorylation;0.0445118958650094!GO:0030031;cell projection biogenesis;0.0452677332310483!GO:0006518;peptide metabolic process;0.0452677332310483!GO:0008143;poly(A) binding;0.0457016461543421!GO:0043241;protein complex disassembly;0.0457854904074755!GO:0006769;nicotinamide metabolic process;0.046544886733378!GO:0042326;negative regulation of phosphorylation;0.0466364335316048!GO:0030833;regulation of actin filament polymerization;0.0474513663829582!GO:0007033;vacuole organization and biogenesis;0.0475125693837064!GO:0003756;protein disulfide isomerase activity;0.0475125693837064!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0475125693837064!GO:0022406;membrane docking;0.0475125693837064!GO:0048278;vesicle docking;0.0475125693837064!GO:0006275;regulation of DNA replication;0.0477021733574227!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0481166227629993!GO:0004721;phosphoprotein phosphatase activity;0.0481478926005298!GO:0000910;cytokinesis;0.0483133779174831!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0485548590072377!GO:0048146;positive regulation of fibroblast proliferation;0.0488188031967065!GO:0006541;glutamine metabolic process;0.0490834031369575!GO:0043549;regulation of kinase activity;0.0495067001379745!GO:0005758;mitochondrial intermembrane space;0.0495221866310611
|sample_id=11323
|sample_note=
|sample_sex=unknown
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=eye
|top_motifs=T:2.04354886063;NKX2-1,4:2.00531233997;ZIC1..3:1.95752617052;PAX1,9:1.78332765409;ZNF384:1.58101068258;SOX17:1.3566777092;CDC5L:1.23596941698;SOX2:1.22158190373;NKX3-1:1.17989473258;EVI1:1.17762827064;ONECUT1,2:1.12225368599;UFEwm:1.12140966271;GFI1:1.12030016714;NR3C1:1.10783604925;HOXA9_MEIS1:1.0458195469;TEAD1:0.9809840428;NANOG:0.974380684572;MZF1:0.960353876975;FOXP1:0.95466847667;TOPORS:0.928299834013;EBF1:0.881609562578;MAZ:0.866559538227;NKX6-1,2:0.823128793641;HOX{A4,D4}:0.804827717811;EGR1..3:0.798179420409;NR6A1:0.757170942316;POU3F1..4:0.736405632669;GFI1B:0.736085079453;ALX1:0.712833026944;HMGA1,2:0.680422675879;NFY{A,B,C}:0.662126991023;ZFP161:0.659885301558;DBP:0.642566558054;SRF:0.640448734499;HSF1,2:0.632480769245;GTF2A1,2:0.631458445725;KLF4:0.618115644159;ALX4:0.594629042018;CDX1,2,4:0.590020303663;LHX3,4:0.58858454871;TFCP2:0.578616629894;TFDP1:0.565327360553;TBX4,5:0.552185964571;NKX2-3_NKX2-5:0.522227715578;STAT1,3:0.521009956187;PAX5:0.518449624033;SP1:0.513715106421;AIRE:0.511017540567;TFAP2{A,C}:0.503925177806;GATA4:0.503050585875;TLX1..3_NFIC{dimer}:0.499086341369;PATZ1:0.49510520105;TFAP4:0.4454890519;IKZF1:0.440283795911;GZF1:0.438153853851;NRF1:0.418851737833;XCPE1{core}:0.407760622206;PAX8:0.403703730173;E2F1..5:0.401582106639;ELK1,4_GABP{A,B1}:0.393915001963;HOX{A5,B5}:0.379949023002;ZBTB6:0.377865516468;GTF2I:0.360820591977;PAX4:0.358641822021;MTE{core}:0.351095732379;POU6F1:0.331698386064;SOX{8,9,10}:0.326981391345;ZNF143:0.324118719693;PRDM1:0.27529592701;RXR{A,B,G}:0.258219337707;ZBTB16:0.234213375037;FOXD3:0.232404145471;HIC1:0.214629191636;TEF:0.211293468525;PBX1:0.204025211933;TFAP2B:0.190860652121;MYBL2:0.183799701088;GLI1..3:0.183382121754;TAL1_TCF{3,4,12}:0.181409148584;ESRRA:0.176317605999;YY1:0.151892927877;NFATC1..3:0.151590092321;HNF4A_NR2F1,2:0.134790986123;POU5F1:0.121427176973;OCT4_SOX2{dimer}:0.119393954335;NFE2L1:0.119246641247;EN1,2:0.116334189093;ADNP_IRX_SIX_ZHX:0.110546404186;ZNF148:0.0857576180134;LEF1_TCF7_TCF7L1,2:0.0736384583636;PITX1..3:0.0661543948574;FOXM1:0.0581553661171;NKX3-2:0.0526889132147;IKZF2:0.0393566177416;NHLH1,2:0.022210270876;RBPJ:0.0177417693562;XBP1:0.0136449404946;RFX1:0.0122125014912;HMX1:0.00942254750912;FOSL2:-0.0164438140794;MYOD1:-0.0172904599741;TP53:-0.040611919639;AHR_ARNT_ARNT2:-0.0631898451043;BACH2:-0.0673333676262;MTF1:-0.0792850358599;SPZ1:-0.103895728054;MYFfamily:-0.111585660378;NANOG{mouse}:-0.112116506559;LMO2:-0.12411823747;NR1H4:-0.13182978016;CRX:-0.138392614142;GCM1,2:-0.141508875317;SMAD1..7,9:-0.161581420107;MYB:-0.175276386858;FOS_FOS{B,L1}_JUN{B,D}:-0.185629427661;HNF1A:-0.187731014356;NKX2-2,8:-0.19206663387;PAX6:-0.197334760053;ARID5B:-0.200525421199;RREB1:-0.205624157019;NFE2L2:-0.206393154565;STAT2,4,6:-0.206676910213;BREu{core}:-0.215140652211;JUN:-0.217042451296;FOXL1:-0.219214519679;RUNX1..3:-0.221872000983;VSX1,2:-0.22739645277;NR5A1,2:-0.238664505705;RXRA_VDR{dimer}:-0.239733580443;POU2F1..3:-0.245023703291;ZEB1:-0.254569354664;REST:-0.258045674538;FOXA2:-0.285419452862;CUX2:-0.294349602504;TLX2:-0.296326046465;POU1F1:-0.299481884132;TBP:-0.308294482254;MED-1{core}:-0.317575395886;SNAI1..3:-0.317898853315;ATF6:-0.318684719996;MEF2{A,B,C,D}:-0.321065612305;FOXN1:-0.368280683408;NFE2:-0.369508307449;TGIF1:-0.380540415954;PRRX1,2:-0.399735965588;CREB1:-0.410424454597;FOXP3:-0.423206057753;NFIX:-0.428489156456;NFKB1_REL_RELA:-0.429045956935;AR:-0.430762239448;HOX{A6,A7,B6,B7}:-0.441646028656;RFX2..5_RFXANK_RFXAP:-0.48095852778;ZNF423:-0.488401496691;ATF4:-0.489604444284;IRF1,2:-0.491910846866;PAX2:-0.495533445124;SOX5:-0.49785056063;HIF1A:-0.499610695936;BPTF:-0.518758768778;ELF1,2,4:-0.540091719778;PAX3,7:-0.554349551569;FOXQ1:-0.56444361503;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.606645414045;SPI1:-0.607038315487;STAT5{A,B}:-0.607845350412;HLF:-0.612886197698;ATF2:-0.62844953028;ESR1:-0.639259428953;FOX{D1,D2}:-0.646035255901;EP300:-0.648386901194;SPIB:-0.664624896862;RORA:-0.676556290285;MAFB:-0.679258222527;FOX{I1,J2}:-0.697222077081;ZNF238:-0.745945652904;ETS1,2:-0.757575632909;IRF7:-0.773420084121;ATF5_CREB3:-0.778225081121;DMAP1_NCOR{1,2}_SMARC:-0.780693605026;GATA6:-0.793580165971;bHLH_family:-0.800280039975;FOXO1,3,4:-0.87627895134;SREBF1,2:-0.884992429057;CEBPA,B_DDIT3:-0.897136962169;PDX1:-0.902941096415;NFIL3:-0.926024545055;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.933111306771;HBP1_HMGB_SSRP1_UBTF:-1.0609360863;HAND1,2:-1.09898919768;FOX{F1,F2,J1}:-1.32327217235;PPARG:-1.42742902664;HES1:-1.6043197772
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11323-117D9;search_select_hide=table117:FF:11323-117D9
}}
}}

Latest revision as of 17:52, 4 June 2020

Name:Ciliary Epithelial Cells, donor2
Species:Human (Homo sapiens)
Library ID:CNhs11966
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueeye
dev stagefetus
sexunknown
agefetal
cell typeciliated epithelial cell
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number564
catalog numberSC6585
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005764
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11966 CAGE DRX008207 DRR009079
Accession ID Hg19

Library idBAMCTSS
CNhs11966 DRZ000504 DRZ001889
Accession ID Hg38

Library idBAMCTSS
CNhs11966 DRZ011854 DRZ013239
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005764
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10013.CTTGTA sRNA-Seq DRX037213 DRR041579
Accession ID Hg19

Library idBAMCTSS
SRhi10013.CTTGTA DRZ007221


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0764
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.166
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.087
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0539
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0776
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0357
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.00676
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.319
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.468
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.102
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.087
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0384
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.15
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.276
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.087
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.841
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.536
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.33
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.407
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11966

Jaspar motifP-value
MA0002.20.0131
MA0003.10.0331
MA0004.10.052
MA0006.10.342
MA0007.10.604
MA0009.10.147
MA0014.10.197
MA0017.10.0127
MA0018.20.0439
MA0019.10.843
MA0024.10.127
MA0025.10.138
MA0027.10.9
MA0028.10.587
MA0029.10.445
MA0030.18.68829e-4
MA0031.15.15352e-5
MA0035.20.0388
MA0038.10.101
MA0039.20.418
MA0040.10.405
MA0041.10.198
MA0042.10.255
MA0043.10.0163
MA0046.10.73
MA0047.24.41231e-5
MA0048.10.0833
MA0050.13.99191e-4
MA0051.10.0127
MA0052.10.0122
MA0055.10.662
MA0057.10.672
MA0058.10.0104
MA0059.10.0507
MA0060.12.22669e-4
MA0061.11.94578e-4
MA0062.20.0399
MA0065.20.00444
MA0066.10.29
MA0067.10.00516
MA0068.10.0264
MA0069.10.622
MA0070.10.811
MA0071.10.314
MA0072.10.509
MA0073.10.99
MA0074.10.427
MA0076.10.965
MA0077.10.139
MA0078.10.563
MA0079.20.465
MA0080.22.2974e-13
MA0081.10.0363
MA0083.10.0121
MA0084.10.317
MA0087.10.266
MA0088.10.113
MA0090.10.0163
MA0091.10.163
MA0092.10.274
MA0093.10.0691
MA0099.22.88005e-5
MA0100.10.927
MA0101.10.0123
MA0102.22.72545e-4
MA0103.10.118
MA0104.20.00629
MA0105.12.667e-6
MA0106.10.961
MA0107.11.46473e-4
MA0108.20.775
MA0111.10.587
MA0112.22.93011e-4
MA0113.10.0673
MA0114.10.032
MA0115.10.632
MA0116.11.77111e-5
MA0117.10.575
MA0119.10.771
MA0122.10.974
MA0124.10.503
MA0125.10.412
MA0131.10.912
MA0135.10.623
MA0136.17.8711e-17
MA0137.20.153
MA0138.20.166
MA0139.10.537
MA0140.10.012
MA0141.10.123
MA0142.10.166
MA0143.10.374
MA0144.10.159
MA0145.10.458
MA0146.10.196
MA0147.10.0351
MA0148.15.93989e-4
MA0149.10.0905
MA0150.12.41884e-5
MA0152.10.269
MA0153.10.753
MA0154.10.00243
MA0155.10.51
MA0156.11.84549e-9
MA0157.10.00728
MA0159.10.0204
MA0160.10.0239
MA0162.10.622
MA0163.11.09749e-6
MA0164.10.777
MA0258.10.00549
MA0259.10.223



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11966

Novel motifP-value
10.109
100.229
1000.637
1010.498
1020.477
1030.165
1040.656
1050.0522
1060.0419
1070.705
1080.888
1090.108
110.114
1100.704
1110.00601
1120.039
1130.166
1140.115
1150.0361
1160.779
1170.28
1180.46
1190.621
120.193
1200.925
1210.961
1220.33
1230.0816
1240.236
1250.82
1260.101
1270.158
1280.36
1290.335
130.552
1300.492
1310.693
1320.89
1330.904
1340.55
1350.0395
1360.24
1370.0594
1380.24
1390.0577
140.615
1400.164
1410.255
1420.98
1430.0892
1440.771
1450.728
1460.591
1470.539
1480.0382
1490.234
150.116
1500.731
1510.212
1520.182
1530.326
1540.558
1550.012
1560.132
1570.378
1580.00554
1590.544
160.71
1600.265
1610.66
1620.226
1630.437
1640.286
1650.883
1660.0398
1670.946
1680.719
1690.00845
170.215
180.0945
190.498
20.422
200.922
210.769
220.154
230.153
240.334
250.253
260.427
270.27
280.919
290.212
30.237
300.895
310.748
320.302
330.445
340.526
350.318
360.0252
370.206
380.119
390.423
40.494
400.071
410.034
420.319
430.0794
440.925
450.428
460.105
470.378
480.337
490.048
50.123
500.716
510.502
520.438
530.37
540.515
550.989
560.498
570.611
580.0756
590.292
60.644
600.0376
610.169
620.0704
630.235
640.204
650.134
660.848
670.832
680.489
690.767
70.29
700.0924
710.144
720.103
730.128
740.64
750.0293
760.197
770.261
780.718
790.536
80.563
800.105
810.483
820.0919
830.579
840.27
850.0489
860.165
870.799
880.743
890.575
90.261
900.516
910.856
920.201
930.0062
940.145
950.0203
960.0499
970.782
980.0547
990.156



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11966


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000064 (ciliated cell)
0000075 (columnar/cuboidal epithelial cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000710 (neurecto-epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)
0000067 (ciliated epithelial cell)
0005012 (multi-ciliated epithelial cell)
0002304 (non-pigmented ciliary epithelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000970 (eye)
0000019 (camera-type eye)
0000483 (epithelium)
0000033 (head)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000047 (simple eye)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000020 (sense organ)
0010371 (ecto-epithelium)
0002203 (vasculature of eye)
0001768 (uvea)
0000488 (atypical epithelium)
0007625 (pigment epithelium of eye)
0001032 (sensory system)
0002049 (vasculature)
0002200 (vasculature of head)
0006876 (vasculature of organ)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0001778 (ciliary epithelium)
0004088 (ocular region)
0000153 (anterior region of body)
0007811 (craniocervical region)
0004535 (cardiovascular system)
0002104 (visual system)
0001801 (anterior segment of eyeball)
0004456 (entire sense organ system)
0001456 (face)
0001775 (ciliary body)
0010230 (eyeball of camera-type eye)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000040 (human ciliary epithelial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000221 (ectodermal cell)

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