FF:11681-122H7: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005902 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008527;DRR009399;DRZ000824;DRZ002209;DRZ012174;DRZ013559 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000483,UBERON:0005910,UBERON:0000479,UBERON:0004119,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0005911,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000486,UBERON:0010317,UBERON:0000365,UBERON:0001008 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0000244,CL:0000731 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000191 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Urothelial%2520Cells%252c%2520donor3.CNhs12122.11681-122H7.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Urothelial%2520Cells%252c%2520donor3.CNhs12122.11681-122H7.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Urothelial%2520Cells%252c%2520donor3.CNhs12122.11681-122H7.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Urothelial%2520Cells%252c%2520donor3.CNhs12122.11681-122H7.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Urothelial%2520Cells%252c%2520donor3.CNhs12122.11681-122H7.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11681-122H7 | |id=FF:11681-122H7 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000191 | ||
|is_obsolete= | |||
|library_id=CNhs12122 | |||
|library_id_phase_based=2:CNhs12122 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11681 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11681 | |||
|name=Urothelial Cells, donor3 | |name=Urothelial Cells, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12122,LSID839,release011,COMPLETED | |profile_hcage=CNhs12122,LSID839,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0.159395773552723,0.460310434424297,0.481289630991267,0,0,0,0,0,0,0,0,0,0,0.159395773552723,0,0,0.58182072228196,0,0,0,0.183705028662811,0,0.465592115590942,0,0,0.310106124404317,0,0,0,0,0,0,0,0,0,0,0,0,0.564416551550464,0.275739748541768,0,0,0.507471414038015,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0,0,0.346070352940574,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0376802171842853,0.0783930539857871,0,0,0,0.219849478192655,0.21771065356188,0,0,0,0,-0.0980353512377064,0.210610988171315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157362113096546,0,0,0,0.38562277915588,0.614384854495952,0,0,0.0746362406011014,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0.159395773552723,0,0,0,0,0,0,0,0,-0.0877831017328418,0,0.0333851952860061,0.132224606018296,0,0,-0.209711325862325,0,0,0,0,0,0,0,0,0,0.729696245562933,0,0.108983221963408,0,0.159395773552723,0,0,-0.0186252810838506,-0.146076457345685,0,-0.0945601743731485,0.0910515124753545,0,0,0,0,0.138340764889478,0,0.0385162897589821,-0.0827201683234173,-0.221611588102807,0.612077207188299,-0.055712496781182,0,0,0,0.259189288801733,0.386260839645608,0,0,0.18482441027701,-0.181349618560659,0,0,-0.391044581551635,0,0.0519885291304906,-0.0604397418968705,0,-0.220879436726905,0,0,0,0,0,0,0,0,0,0,0,0.0222044199549247,-0.326988596678969,0,0.159395773552723,0.443062714183179,0,0.272954480803557,0,0,0.534924390915857,0.347440364647562,0,-0.0663790681313022,0,-0.142993953457191,-0.144756904915593,0.195833836069445,0.219849478192655,-0.147401849371139,-0.0305859459971246,0.159395773552723,0.197529363261376,-0.0170628719245883,0.0772621236145097,0.277846817959876,0.147082988954995,0.356207766291892,0.198374227720459,0.159395773552723,0.159395773552723,0,-0.20159377537843,0,0,0.441257336947612,0.29074176460383,0.356422488221318,0.64603570149221,0.32958183973317,-0.164040103503071,-0.0395325284566706,0.240739925047826,0.060076904806623,-0.200040967812111,0,0.367410057325623,0.0994404288506956,-0.0162451643087136,-0.0877357291629018,0.0419409217162038,0.10424053585589,0.0795725500480187,0.299065796248255,0,0.031065219732003,0.272958275899364,0,0.0189735090929384,0.434567072726647,0,0,0,0,0,-0.0322774314840755,0.024057868828833,-0.0734597880028221,0,0.101945842877712,-0.010174707592665,0.182810261339189,0,-0.0137030659958168,0.129312415113661,0.0386697752168118,0.304548580705584,0,0.306534851640364,0.0384818636822742,0.21353609053764,0.43542130712376,-0.0584468268118252,-0.223000519737717,0.149435460765172,0.255749938765905,-0.225389852931227,0,-0.0881268324752877,0.159395773552723,-0.88354475051838,0.204245743707069,0.177850983230845,0.0055733191772115,0,-0.348707328397568,0,-0.84623299093945,0,0.27545811143497,0.117333343421643,-0.439289374580686,-0.568906638661068,0,0.283034805524397,0.893142836764812,0.180348385751871,0.308481619153984,0,0.159395773552723,-0.150367083334639,0.0715137906768408,-0.131952541088228,-0.0592915699028333,0,0.292193585940626,0,0,-0.0838948998712881,-0.235476037764389,0,0.0310355295419354,0.191593995617432,-0.161153327012116,-0.115971073434934,0,0,0.788267467630496,0,0.159395773552723,0.425701062024877,0,0.0783930539857871,-0.253326341486756,0,0.541816603895082,0,0,-0.177527765965176,0,-0.141766626018062,0,0,0.216872125119502,0,0,0,0,0,0,0,0,0,0,0,0,-0.476762941077773,-0.195437556663725,0,0.33447851182611,0,0,0,0,0,0,0,0,0.349522726494504,-0.0383034886763188,0.0363783578763024,0.0796978867763615,0,0,0,-0.215723402553475,-0.203236562094724,0,-0.131862706497632,0,0,0,0,-0.0861409897892114,0,0.159395773552723,0,0,-0.057730457053664,0.384474170919539,0,0,0,0.42122197634263,0,0,0,-0.0146188247041546,-0.416238519776553,0,0,-0.13599227503783,0,0.373177616311607,0.285828177778782,0,-0.059594231791077,0.549622756851148,1.092511847168,0,0.367410057325623,-0.261347131789888,0,0.0796978867763615,-0.42273579757548,0,0,0,0,0,0,0,0,0,-0.214314512399756,0,0,0,0,0,0,0,0,0,0,0,0.059458347685652,0.183515691883257,0.0953361030356145,0,0,0,0,0,0,0.277123220789048,0.134291435122767,0,0,0,0,0,0,0,0,-0.471425939663242,0,0,0,0,0,0.346070352940574,0,0,0,0,0.686839513440765,0,0,0.0900479251321094,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,0.505251349870701,0,0,0,0,0,0.159395773552723,0,0.460310434424297,0,0.275739748541768,0,0,-0.113884373708977,0,0,0,0.0545993887635663,0,-0.160318030086386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.147387159890197,0,-0.0105790858004298,-0.0568589461625992,0,0,0.073975909395842,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0962259712900034,0,0,0,0,0,0,0,0.465592115590942,0,0,-0.0123349230241648,0,0,0,0,0.159395773552723,0,0.140809235091862,0.372772242056699,-0.000873242640898055,0,0,0,-0.054385572482455,0,0,0.0411039912744495,0,0.208962361122867,0,0,0,0,0,0,0,0,0.159395773552723,0,0,0,0,0,0.159395773552723,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.58182072228196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159395773552723,0.0796978867763615,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.287391589056985,0,0,0,-0.053690456104321,0,0,0,0,0,0,0.159395773552723,0,0.367410057325623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275739748541768,0,0,0,0.502781679922029,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0482220752390542,0,-0.0843766322300271,0,0,0.159395773552723,0,0,0,0,0,0,0,0,0.275739748541768,0,0,0,0,0.380868008908673,0,0,0,0,0.319772946664705,0,0,0,0,0,0,0,-0.00950035825470885,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113799449037118,0,0,0.639658021862796,0,0,0,0,0,0,0,0,0,0,0,0,0.214419569391641,0,0,0,0,0,0,0,0,0,0.507471414038015,-0.0484300422256687,0,0,0,0,0,0,0,0,1.29278900575406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| |||
|rna_box=122 | |rna_box=122 | ||
|rna_catalog_number=SC4325 | |rna_catalog_number=SC4325 | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=lot:4449 | |sample_cell_catalog=lot:4449 | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 91: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.97425079852029e-214!GO:0005737;cytoplasm;5.16859159031288e-191!GO:0043226;organelle;2.13290726212146e-150!GO:0043229;intracellular organelle;6.0106242926539e-150!GO:0043231;intracellular membrane-bound organelle;1.29015288011409e-138!GO:0043227;membrane-bound organelle;2.46941880216542e-138!GO:0044444;cytoplasmic part;4.88160941864963e-132!GO:0044422;organelle part;4.19605866947991e-113!GO:0044446;intracellular organelle part;6.328323502416e-112!GO:0032991;macromolecular complex;1.37366048479216e-65!GO:0044237;cellular metabolic process;2.6197082398328e-65!GO:0044238;primary metabolic process;1.139705632282e-64!GO:0005515;protein binding;4.77558013788797e-64!GO:0005739;mitochondrion;1.16495916942632e-62!GO:0030529;ribonucleoprotein complex;2.04706590674608e-60!GO:0043170;macromolecule metabolic process;1.606927723387e-53!GO:0031090;organelle membrane;2.38410317929897e-53!GO:0043233;organelle lumen;7.09354468047829e-47!GO:0031974;membrane-enclosed lumen;7.09354468047829e-47!GO:0005840;ribosome;2.24722734673214e-45!GO:0019538;protein metabolic process;4.53371358391049e-45!GO:0009058;biosynthetic process;1.79030016372552e-44!GO:0006412;translation;3.72173267849641e-42!GO:0044429;mitochondrial part;1.55238446807892e-41!GO:0003735;structural constituent of ribosome;3.64627643455928e-41!GO:0044249;cellular biosynthetic process;3.50853999118366e-39!GO:0044260;cellular macromolecule metabolic process;5.790515435971e-39!GO:0003723;RNA binding;1.02354518728606e-38!GO:0044267;cellular protein metabolic process;1.13920831417162e-38!GO:0044428;nuclear part;2.08041286227135e-37!GO:0009059;macromolecule biosynthetic process;6.25665893401804e-36!GO:0005634;nucleus;6.25665893401804e-36!GO:0033279;ribosomal subunit;1.30280873277104e-35!GO:0015031;protein transport;2.74452236777846e-35!GO:0033036;macromolecule localization;4.44532597517455e-35!GO:0005829;cytosol;2.03498992751133e-34!GO:0016043;cellular component organization and biogenesis;2.99953993090961e-34!GO:0008104;protein localization;1.70852597557083e-33!GO:0031967;organelle envelope;3.06801681648849e-33!GO:0045184;establishment of protein localization;3.94448996011149e-33!GO:0043234;protein complex;4.3044601509282e-33!GO:0031975;envelope;6.57633192014809e-33!GO:0005740;mitochondrial envelope;2.67053706679869e-28!GO:0043228;non-membrane-bound organelle;4.13935648614006e-27!GO:0043232;intracellular non-membrane-bound organelle;4.13935648614006e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);9.60666357045674e-27!GO:0046907;intracellular transport;1.78367511069463e-26!GO:0031966;mitochondrial membrane;2.50978873779208e-26!GO:0065003;macromolecular complex assembly;3.95643357623453e-26!GO:0006396;RNA processing;2.33945101541178e-25!GO:0043283;biopolymer metabolic process;3.99701686799341e-25!GO:0031981;nuclear lumen;1.39551917821709e-24!GO:0019866;organelle inner membrane;2.39462720328551e-24!GO:0005783;endoplasmic reticulum;5.38151569616672e-24!GO:0005743;mitochondrial inner membrane;3.5706526693044e-23!GO:0006886;intracellular protein transport;3.79692660848305e-23!GO:0022607;cellular component assembly;3.87186760236731e-23!GO:0012505;endomembrane system;7.78850893551244e-23!GO:0006996;organelle organization and biogenesis;7.24079906423013e-22!GO:0010467;gene expression;1.39848098426138e-21!GO:0044445;cytosolic part;4.53574638732854e-21!GO:0016071;mRNA metabolic process;2.20092447300415e-20!GO:0044432;endoplasmic reticulum part;4.2781885099197e-20!GO:0006119;oxidative phosphorylation;3.86889876301289e-19!GO:0015934;large ribosomal subunit;5.73650831398478e-19!GO:0008380;RNA splicing;1.66924346229509e-18!GO:0048770;pigment granule;3.93497972400448e-18!GO:0042470;melanosome;3.93497972400448e-18!GO:0005794;Golgi apparatus;5.94542388189104e-18!GO:0044455;mitochondrial membrane part;9.54580962213152e-18!GO:0015935;small ribosomal subunit;1.15729783169306e-17!GO:0006397;mRNA processing;2.8050329877452e-17!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.84721522126914e-17!GO:0022613;ribonucleoprotein complex biogenesis and assembly;9.41430491630419e-17!GO:0051641;cellular localization;1.86759898827676e-16!GO:0031980;mitochondrial lumen;1.87859176735524e-16!GO:0005759;mitochondrial matrix;1.87859176735524e-16!GO:0051649;establishment of cellular localization;1.87859176735524e-16!GO:0005789;endoplasmic reticulum membrane;5.06441861409397e-16!GO:0042175;nuclear envelope-endoplasmic reticulum network;5.71038780128086e-16!GO:0012501;programmed cell death;3.18123790505921e-15!GO:0016874;ligase activity;3.70212174388238e-15!GO:0051186;cofactor metabolic process;4.30801369792888e-15!GO:0006915;apoptosis;5.90008681187704e-15!GO:0005746;mitochondrial respiratory chain;1.24741033871576e-14!GO:0008134;transcription factor binding;1.89587519747331e-14!GO:0005681;spliceosome;3.40698745803166e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.41481062037829e-14!GO:0005654;nucleoplasm;4.43451441950342e-14!GO:0043412;biopolymer modification;1.19879453095195e-13!GO:0008219;cell death;1.22047439358619e-13!GO:0016265;death;1.22047439358619e-13!GO:0006457;protein folding;1.33792967191435e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.38850896832961e-13!GO:0050136;NADH dehydrogenase (quinone) activity;1.63423447961829e-13!GO:0003954;NADH dehydrogenase activity;1.63423447961829e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.63423447961829e-13!GO:0006605;protein targeting;2.60097208748689e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.72916567698697e-13!GO:0006464;protein modification process;8.05574121317226e-13!GO:0044248;cellular catabolic process;1.18027632326178e-12!GO:0006259;DNA metabolic process;1.21236032603055e-12!GO:0006732;coenzyme metabolic process;1.70802762232885e-12!GO:0044265;cellular macromolecule catabolic process;2.83201355817639e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.10992295314196e-12!GO:0009057;macromolecule catabolic process;3.6594730506203e-12!GO:0043285;biopolymer catabolic process;4.82994083929886e-12!GO:0006512;ubiquitin cycle;5.01865409062524e-12!GO:0044451;nucleoplasm part;5.76361399101987e-12!GO:0005761;mitochondrial ribosome;6.06490244035538e-12!GO:0000313;organellar ribosome;6.06490244035538e-12!GO:0016462;pyrophosphatase activity;8.30124605697978e-12!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;8.41775074756049e-12!GO:0016817;hydrolase activity, acting on acid anhydrides;8.46672692500591e-12!GO:0030964;NADH dehydrogenase complex (quinone);1.03089327610087e-11!GO:0045271;respiratory chain complex I;1.03089327610087e-11!GO:0005747;mitochondrial respiratory chain complex I;1.03089327610087e-11!GO:0042775;organelle ATP synthesis coupled electron transport;1.04067680757052e-11!GO:0042773;ATP synthesis coupled electron transport;1.04067680757052e-11!GO:0005730;nucleolus;1.30598814721671e-11!GO:0000166;nucleotide binding;3.18920856006152e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.34196235457471e-11!GO:0017111;nucleoside-triphosphatase activity;3.41428560480381e-11!GO:0000502;proteasome complex (sensu Eukaryota);6.3617538249276e-11!GO:0006461;protein complex assembly;9.77819720779565e-11!GO:0043687;post-translational protein modification;1.36379829711344e-10!GO:0051603;proteolysis involved in cellular protein catabolic process;1.40888963912803e-10!GO:0043067;regulation of programmed cell death;1.77633677244374e-10!GO:0030163;protein catabolic process;1.77761282598143e-10!GO:0019941;modification-dependent protein catabolic process;1.94191033892034e-10!GO:0043632;modification-dependent macromolecule catabolic process;1.94191033892034e-10!GO:0044257;cellular protein catabolic process;2.06512028999608e-10!GO:0042981;regulation of apoptosis;2.35597662228688e-10!GO:0006511;ubiquitin-dependent protein catabolic process;3.85670001304445e-10!GO:0022618;protein-RNA complex assembly;3.9069704051761e-10!GO:0048193;Golgi vesicle transport;5.30277082984721e-10!GO:0048523;negative regulation of cellular process;7.98016567700523e-10!GO:0051082;unfolded protein binding;1.04247505147533e-09!GO:0016192;vesicle-mediated transport;1.2345900897499e-09!GO:0009055;electron carrier activity;1.29934026064914e-09!GO:0005768;endosome;1.5283498156447e-09!GO:0003712;transcription cofactor activity;2.39517840296367e-09!GO:0007049;cell cycle;5.58151594833506e-09!GO:0044431;Golgi apparatus part;7.15389543703672e-09!GO:0051188;cofactor biosynthetic process;7.15389543703672e-09!GO:0048519;negative regulation of biological process;8.61315394328137e-09!GO:0009056;catabolic process;1.17644877962968e-08!GO:0032553;ribonucleotide binding;1.45146701841658e-08!GO:0032555;purine ribonucleotide binding;1.45146701841658e-08!GO:0017076;purine nucleotide binding;1.71492731137519e-08!GO:0008135;translation factor activity, nucleic acid binding;2.09038088904061e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.54291152292219e-08!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;4.33816002180764e-08!GO:0005773;vacuole;5.20088658949305e-08!GO:0006913;nucleocytoplasmic transport;5.2562465184845e-08!GO:0016491;oxidoreductase activity;5.38703693040037e-08!GO:0000398;nuclear mRNA splicing, via spliceosome;5.57955374665124e-08!GO:0000375;RNA splicing, via transesterification reactions;5.57955374665124e-08!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;5.57955374665124e-08!GO:0017038;protein import;7.46477138519772e-08!GO:0008565;protein transporter activity;8.2475105766278e-08!GO:0006163;purine nucleotide metabolic process;8.8430760852559e-08!GO:0005793;ER-Golgi intermediate compartment;9.12723659082694e-08!GO:0051169;nuclear transport;9.87051456428942e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.07704949666955e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.13720587226197e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.17563432318962e-07!GO:0008639;small protein conjugating enzyme activity;1.22506677760718e-07!GO:0007005;mitochondrion organization and biogenesis;1.36388388555653e-07!GO:0048475;coated membrane;1.47234316257318e-07!GO:0030117;membrane coat;1.47234316257318e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;1.50252604200396e-07!GO:0006366;transcription from RNA polymerase II promoter;1.54272746199665e-07!GO:0051726;regulation of cell cycle;1.67841368349536e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.74865899034788e-07!GO:0000074;regulation of progression through cell cycle;1.83149235032335e-07!GO:0009259;ribonucleotide metabolic process;1.83149235032335e-07!GO:0009150;purine ribonucleotide metabolic process;1.88362921777218e-07!GO:0016740;transferase activity;1.96825010309329e-07!GO:0006164;purine nucleotide biosynthetic process;2.24486302935722e-07!GO:0004842;ubiquitin-protein ligase activity;2.26998407525671e-07!GO:0009141;nucleoside triphosphate metabolic process;3.19637956896828e-07!GO:0030120;vesicle coat;4.15109435333795e-07!GO:0030662;coated vesicle membrane;4.15109435333795e-07!GO:0009152;purine ribonucleotide biosynthetic process;4.85027704494278e-07!GO:0042254;ribosome biogenesis and assembly;5.19832881057347e-07!GO:0009142;nucleoside triphosphate biosynthetic process;5.19832881057347e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.19832881057347e-07!GO:0019787;small conjugating protein ligase activity;5.39249132968584e-07!GO:0000139;Golgi membrane;5.5624020251913e-07!GO:0030532;small nuclear ribonucleoprotein complex;5.60239847810647e-07!GO:0009199;ribonucleoside triphosphate metabolic process;5.60239847810647e-07!GO:0015986;ATP synthesis coupled proton transport;5.86622651519592e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;5.86622651519592e-07!GO:0006323;DNA packaging;6.53937574991497e-07!GO:0009108;coenzyme biosynthetic process;6.66243698446157e-07!GO:0009260;ribonucleotide biosynthetic process;7.79473004983201e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;9.07194060986278e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;9.07194060986278e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;9.61231342203505e-07!GO:0009144;purine nucleoside triphosphate metabolic process;9.61231342203505e-07!GO:0000323;lytic vacuole;1.00106440353071e-06!GO:0005764;lysosome;1.00106440353071e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.10644327240499e-06!GO:0043069;negative regulation of programmed cell death;1.35779524531729e-06!GO:0005635;nuclear envelope;1.39605746880043e-06!GO:0016023;cytoplasmic membrane-bound vesicle;1.40016080015461e-06!GO:0006446;regulation of translational initiation;1.44306351284944e-06!GO:0016070;RNA metabolic process;1.51414972498789e-06!GO:0048522;positive regulation of cellular process;1.51414972498789e-06!GO:0005524;ATP binding;1.52618606185931e-06!GO:0022402;cell cycle process;1.65416759906655e-06!GO:0051246;regulation of protein metabolic process;1.70006559818333e-06!GO:0003924;GTPase activity;1.96256388956789e-06!GO:0031988;membrane-bound vesicle;2.23696113899965e-06!GO:0032559;adenyl ribonucleotide binding;2.26391354102702e-06!GO:0016881;acid-amino acid ligase activity;2.85579027278305e-06!GO:0006916;anti-apoptosis;3.00571592878631e-06!GO:0006399;tRNA metabolic process;3.02565691554593e-06!GO:0030554;adenyl nucleotide binding;3.10487243140905e-06!GO:0043066;negative regulation of apoptosis;3.2572303478566e-06!GO:0015078;hydrogen ion transmembrane transporter activity;3.61800019137995e-06!GO:0006413;translational initiation;3.62364215470101e-06!GO:0009060;aerobic respiration;3.77587342792033e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.00279442086214e-06!GO:0004812;aminoacyl-tRNA ligase activity;4.00279442086214e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.00279442086214e-06!GO:0003743;translation initiation factor activity;4.48550863107794e-06!GO:0019829;cation-transporting ATPase activity;4.60026765023418e-06!GO:0000785;chromatin;4.71634254113286e-06!GO:0006754;ATP biosynthetic process;4.95048355491564e-06!GO:0006753;nucleoside phosphate metabolic process;4.95048355491564e-06!GO:0065009;regulation of a molecular function;5.19809458130687e-06!GO:0046034;ATP metabolic process;6.39476778589499e-06!GO:0009117;nucleotide metabolic process;7.50681954875831e-06!GO:0045259;proton-transporting ATP synthase complex;8.38921686232329e-06!GO:0006333;chromatin assembly or disassembly;8.8499381826196e-06!GO:0006752;group transfer coenzyme metabolic process;8.97478091893064e-06!GO:0007243;protein kinase cascade;9.20839551163908e-06!GO:0031982;vesicle;9.38873004247027e-06!GO:0006793;phosphorus metabolic process;9.50473660619762e-06!GO:0006796;phosphate metabolic process;9.50473660619762e-06!GO:0043038;amino acid activation;9.65915989676284e-06!GO:0006418;tRNA aminoacylation for protein translation;9.65915989676284e-06!GO:0043039;tRNA aminoacylation;9.65915989676284e-06!GO:0051276;chromosome organization and biogenesis;1.06066962887668e-05!GO:0009967;positive regulation of signal transduction;1.06585980496152e-05!GO:0031252;leading edge;1.07510695834192e-05!GO:0031410;cytoplasmic vesicle;1.11273988909227e-05!GO:0044440;endosomal part;1.16373413052051e-05!GO:0010008;endosome membrane;1.16373413052051e-05!GO:0065004;protein-DNA complex assembly;1.21536202897126e-05!GO:0050794;regulation of cellular process;1.25589642336169e-05!GO:0031965;nuclear membrane;1.37869505741647e-05!GO:0003676;nucleic acid binding;1.46529658815619e-05!GO:0005770;late endosome;1.47954851245195e-05!GO:0016604;nuclear body;1.53278691111211e-05!GO:0016469;proton-transporting two-sector ATPase complex;1.64142088505319e-05!GO:0000278;mitotic cell cycle;1.67907085173766e-05!GO:0006091;generation of precursor metabolites and energy;1.69629983872092e-05!GO:0005839;proteasome core complex (sensu Eukaryota);1.69635161023683e-05!GO:0016564;transcription repressor activity;1.72867178881218e-05!GO:0008610;lipid biosynthetic process;1.89900149819876e-05!GO:0044453;nuclear membrane part;2.9019270491249e-05!GO:0042802;identical protein binding;2.91326353922016e-05!GO:0005762;mitochondrial large ribosomal subunit;3.17039603259131e-05!GO:0000315;organellar large ribosomal subunit;3.17039603259131e-05!GO:0031324;negative regulation of cellular metabolic process;3.29715410454501e-05!GO:0043623;cellular protein complex assembly;3.34484056604942e-05!GO:0051170;nuclear import;3.59573347675012e-05!GO:0008654;phospholipid biosynthetic process;3.80194499056966e-05!GO:0045333;cellular respiration;4.02724040466633e-05!GO:0051187;cofactor catabolic process;4.04173854650738e-05!GO:0006606;protein import into nucleus;4.2797759253188e-05!GO:0009109;coenzyme catabolic process;4.66097861180715e-05!GO:0003714;transcription corepressor activity;5.15100589758914e-05!GO:0032446;protein modification by small protein conjugation;5.3283495686082e-05!GO:0006888;ER to Golgi vesicle-mediated transport;5.35798668018898e-05!GO:0048518;positive regulation of biological process;5.35798668018898e-05!GO:0005905;coated pit;5.38241981806505e-05!GO:0045786;negative regulation of progression through cell cycle;5.86451536950602e-05!GO:0016567;protein ubiquitination;6.27081483315748e-05!GO:0006974;response to DNA damage stimulus;6.4537827344779e-05!GO:0006099;tricarboxylic acid cycle;6.52378558372441e-05!GO:0046356;acetyl-CoA catabolic process;6.52378558372441e-05!GO:0030176;integral to endoplasmic reticulum membrane;6.79182202215905e-05!GO:0030118;clathrin coat;6.93317192550897e-05!GO:0016563;transcription activator activity;6.93317192550897e-05!GO:0031497;chromatin assembly;7.03626109194755e-05!GO:0005788;endoplasmic reticulum lumen;7.37362021196684e-05!GO:0006334;nucleosome assembly;7.43845520618039e-05!GO:0042623;ATPase activity, coupled;9.12340526421218e-05!GO:0016072;rRNA metabolic process;9.73900804986424e-05!GO:0065002;intracellular protein transport across a membrane;0.00010141788435492!GO:0006364;rRNA processing;0.000101660592160269!GO:0019899;enzyme binding;0.000106546743933756!GO:0004298;threonine endopeptidase activity;0.00010748306083072!GO:0005798;Golgi-associated vesicle;0.000108370556916405!GO:0016310;phosphorylation;0.000134101529518421!GO:0005525;GTP binding;0.00013430247682214!GO:0006979;response to oxidative stress;0.000135924847228354!GO:0006084;acetyl-CoA metabolic process;0.00013747403430433!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.00014937168569897!GO:0007264;small GTPase mediated signal transduction;0.00014937168569897!GO:0016126;sterol biosynthetic process;0.000151417160501217!GO:0030119;AP-type membrane coat adaptor complex;0.000153028317945043!GO:0016787;hydrolase activity;0.000153028317945043!GO:0003713;transcription coactivator activity;0.000162164044383874!GO:0016779;nucleotidyltransferase activity;0.000169964887510934!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000190528003409734!GO:0016887;ATPase activity;0.00019557404200791!GO:0009892;negative regulation of metabolic process;0.000202782986305384!GO:0033116;ER-Golgi intermediate compartment membrane;0.000218096611250286!GO:0030036;actin cytoskeleton organization and biogenesis;0.000224771146407223!GO:0045454;cell redox homeostasis;0.00023843462700714!GO:0009719;response to endogenous stimulus;0.000243721723415269!GO:0016607;nuclear speck;0.000245858362315557!GO:0030131;clathrin adaptor complex;0.000248747749031253!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00025650286827813!GO:0044255;cellular lipid metabolic process;0.000257839788736989!GO:0030132;clathrin coat of coated pit;0.000288645338824298!GO:0043065;positive regulation of apoptosis;0.000299702993306814!GO:0016044;membrane organization and biogenesis;0.000309024703594747!GO:0051427;hormone receptor binding;0.000325567366302617!GO:0043068;positive regulation of programmed cell death;0.000326318814230891!GO:0016568;chromatin modification;0.000332755444205011!GO:0048468;cell development;0.000355444069519691!GO:0016481;negative regulation of transcription;0.000388647841166629!GO:0044427;chromosomal part;0.000388647841166629!GO:0005694;chromosome;0.000425128054387658!GO:0050790;regulation of catalytic activity;0.000454703641532687!GO:0005769;early endosome;0.000507238290837159!GO:0031968;organelle outer membrane;0.000534328841658551!GO:0005643;nuclear pore;0.000555416326451295!GO:0035257;nuclear hormone receptor binding;0.000559102425109678!GO:0000245;spliceosome assembly;0.000564102062977639!GO:0019867;outer membrane;0.000585748373137577!GO:0006082;organic acid metabolic process;0.000621527721026925!GO:0005741;mitochondrial outer membrane;0.000668651257287961!GO:0005774;vacuolar membrane;0.000682181169119659!GO:0001726;ruffle;0.000722453572634655!GO:0008092;cytoskeletal protein binding;0.000727902264396835!GO:0016125;sterol metabolic process;0.000728749660072441!GO:0007006;mitochondrial membrane organization and biogenesis;0.000736269848825484!GO:0019752;carboxylic acid metabolic process;0.000741841507563845!GO:0008250;oligosaccharyl transferase complex;0.000771866248449697!GO:0005667;transcription factor complex;0.000813100115848737!GO:0030029;actin filament-based process;0.000834251366220235!GO:0030031;cell projection biogenesis;0.000834251366220235!GO:0006066;alcohol metabolic process;0.000846407667429582!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000874578261662491!GO:0055092;sterol homeostasis;0.000875291622063913!GO:0042632;cholesterol homeostasis;0.000875291622063913!GO:0006281;DNA repair;0.000914611829965521!GO:0000314;organellar small ribosomal subunit;0.00097436317535899!GO:0005763;mitochondrial small ribosomal subunit;0.00097436317535899!GO:0016853;isomerase activity;0.000999541077800091!GO:0030867;rough endoplasmic reticulum membrane;0.0010202468310701!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0010202468310701!GO:0008632;apoptotic program;0.00104647969007052!GO:0050789;regulation of biological process;0.00107578989800347!GO:0006695;cholesterol biosynthetic process;0.00114070060443064!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00143469652283636!GO:0005885;Arp2/3 protein complex;0.00151487098928506!GO:0046474;glycerophospholipid biosynthetic process;0.00153675388850006!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00156078679600371!GO:0032561;guanyl ribonucleotide binding;0.00160435064894757!GO:0019001;guanyl nucleotide binding;0.00160435064894757!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00161509590954045!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00168971794642413!GO:0015399;primary active transmembrane transporter activity;0.00168971794642413!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00170447217930754!GO:0005048;signal sequence binding;0.00172884869274866!GO:0044262;cellular carbohydrate metabolic process;0.001751740496123!GO:0008637;apoptotic mitochondrial changes;0.00178183119692538!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00186214210832575!GO:0043681;protein import into mitochondrion;0.00201124021511017!GO:0055088;lipid homeostasis;0.00201423408934775!GO:0019843;rRNA binding;0.00202493330481387!GO:0044437;vacuolar part;0.00202493330481387!GO:0007010;cytoskeleton organization and biogenesis;0.00206027811389837!GO:0030133;transport vesicle;0.00212403307553215!GO:0043488;regulation of mRNA stability;0.00212403307553215!GO:0043487;regulation of RNA stability;0.00212403307553215!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00220393904267073!GO:0030658;transport vesicle membrane;0.00228604195359777!GO:0030125;clathrin vesicle coat;0.0022967061583206!GO:0030665;clathrin coated vesicle membrane;0.0022967061583206!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00233415749991854!GO:0046930;pore complex;0.0023568573092497!GO:0018196;peptidyl-asparagine modification;0.00240096325241569!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00240096325241569!GO:0051920;peroxiredoxin activity;0.00244861203295717!GO:0004576;oligosaccharyl transferase activity;0.00265751096386027!GO:0003697;single-stranded DNA binding;0.00275865683766068!GO:0006839;mitochondrial transport;0.00279562792669736!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00286194706765406!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00291589895821488!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00291589895821488!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00291589895821488!GO:0051789;response to protein stimulus;0.00295040141077508!GO:0006986;response to unfolded protein;0.00295040141077508!GO:0006629;lipid metabolic process;0.00295040141077508!GO:0006626;protein targeting to mitochondrion;0.0030961993347092!GO:0016859;cis-trans isomerase activity;0.00316808066000107!GO:0006650;glycerophospholipid metabolic process;0.00321278390841095!GO:0006818;hydrogen transport;0.00338402474119604!GO:0046489;phosphoinositide biosynthetic process;0.00341707412142001!GO:0006260;DNA replication;0.00357698075789124!GO:0007265;Ras protein signal transduction;0.00360021311664146!GO:0015992;proton transport;0.00364397663327832!GO:0006414;translational elongation;0.00365221739686709!GO:0005765;lysosomal membrane;0.00376819968376662!GO:0003899;DNA-directed RNA polymerase activity;0.00379927971625672!GO:0006917;induction of apoptosis;0.00379927971625672!GO:0051329;interphase of mitotic cell cycle;0.00388105399541531!GO:0048471;perinuclear region of cytoplasm;0.00389219245689726!GO:0005791;rough endoplasmic reticulum;0.00390509567648619!GO:0031902;late endosome membrane;0.00393832323233171!GO:0000786;nucleosome;0.0040994914357169!GO:0046467;membrane lipid biosynthetic process;0.00410993259655264!GO:0001836;release of cytochrome c from mitochondria;0.00443195622031086!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00489600072524018!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00489600072524018!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00500357826230347!GO:0006509;membrane protein ectodomain proteolysis;0.00508131602540538!GO:0033619;membrane protein proteolysis;0.00508131602540538!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00508131602540538!GO:0046822;regulation of nucleocytoplasmic transport;0.00510925118981895!GO:0012502;induction of programmed cell death;0.00519922525676158!GO:0031301;integral to organelle membrane;0.00537476309505686!GO:0007067;mitosis;0.00537476309505686!GO:0009165;nucleotide biosynthetic process;0.00538404549903711!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00544969146802192!GO:0007398;ectoderm development;0.00546018003848549!GO:0006613;cotranslational protein targeting to membrane;0.00546018003848549!GO:0008361;regulation of cell size;0.00547931876979608!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00551593907654898!GO:0006118;electron transport;0.005650323265555!GO:0000087;M phase of mitotic cell cycle;0.00577318323141461!GO:0030660;Golgi-associated vesicle membrane;0.0065035259536624!GO:0051101;regulation of DNA binding;0.00673138778558065!GO:0022890;inorganic cation transmembrane transporter activity;0.00680409377286657!GO:0016049;cell growth;0.00681555997965071!GO:0006643;membrane lipid metabolic process;0.00686290996969897!GO:0045892;negative regulation of transcription, DNA-dependent;0.00686890366315399!GO:0051098;regulation of binding;0.00696048164517847!GO:0043021;ribonucleoprotein binding;0.00704340848565294!GO:0004386;helicase activity;0.00744448573305431!GO:0017166;vinculin binding;0.00768920741316172!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.00778787106752813!GO:0006595;polyamine metabolic process;0.00778958414682676!GO:0009966;regulation of signal transduction;0.00805090968091267!GO:0005684;U2-dependent spliceosome;0.00808878766876197!GO:0007242;intracellular signaling cascade;0.0084548428686734!GO:0015630;microtubule cytoskeleton;0.00870318138022445!GO:0043492;ATPase activity, coupled to movement of substances;0.00871224558202007!GO:0051325;interphase;0.0087548974986482!GO:0006644;phospholipid metabolic process;0.00884553468444528!GO:0008203;cholesterol metabolic process;0.00888456073076887!GO:0015980;energy derivation by oxidation of organic compounds;0.00909907140342357!GO:0030659;cytoplasmic vesicle membrane;0.00917134875904045!GO:0051252;regulation of RNA metabolic process;0.00917134875904045!GO:0030145;manganese ion binding;0.00964231714401101!GO:0000151;ubiquitin ligase complex;0.00970286620023049!GO:0001558;regulation of cell growth;0.0100103941446569!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0100792797861927!GO:0045893;positive regulation of transcription, DNA-dependent;0.0101834309007887!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0101834309007887!GO:0007040;lysosome organization and biogenesis;0.0103101646407154!GO:0030027;lamellipodium;0.0104737075913924!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0105629119791716!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0108559032963136!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0109766831667178!GO:0006458;'de novo' protein folding;0.0110259070057992!GO:0051084;'de novo' posttranslational protein folding;0.0110259070057992!GO:0045334;clathrin-coated endocytic vesicle;0.011185133088649!GO:0051338;regulation of transferase activity;0.0114050359995803!GO:0050662;coenzyme binding;0.0122398642908108!GO:0016197;endosome transport;0.0122928035182475!GO:0030833;regulation of actin filament polymerization;0.0126238513096529!GO:0008026;ATP-dependent helicase activity;0.0134063075822!GO:0005856;cytoskeleton;0.0136087328279588!GO:0031529;ruffle organization and biogenesis;0.0137650280044195!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0138033748655677!GO:0043154;negative regulation of caspase activity;0.0139312256756445!GO:0051287;NAD binding;0.0145028161036909!GO:0033673;negative regulation of kinase activity;0.0146474587779877!GO:0006469;negative regulation of protein kinase activity;0.0146474587779877!GO:0045941;positive regulation of transcription;0.0147277098913113!GO:0051348;negative regulation of transferase activity;0.0147465900348119!GO:0008283;cell proliferation;0.0147620056001485!GO:0006778;porphyrin metabolic process;0.0147620056001485!GO:0033013;tetrapyrrole metabolic process;0.0147620056001485!GO:0008544;epidermis development;0.0147620056001485!GO:0006740;NADPH regeneration;0.015270618444447!GO:0006098;pentose-phosphate shunt;0.015270618444447!GO:0046483;heterocycle metabolic process;0.0155799163311601!GO:0005852;eukaryotic translation initiation factor 3 complex;0.016086532717089!GO:0006402;mRNA catabolic process;0.0161471023527878!GO:0022403;cell cycle phase;0.0166250736022177!GO:0043284;biopolymer biosynthetic process;0.0167908812870651!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0167908812870651!GO:0015002;heme-copper terminal oxidase activity;0.0167908812870651!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0167908812870651!GO:0004129;cytochrome-c oxidase activity;0.0167908812870651!GO:0051168;nuclear export;0.0170321329495035!GO:0006612;protein targeting to membrane;0.0172107605812319!GO:0030663;COPI coated vesicle membrane;0.0172107605812319!GO:0030126;COPI vesicle coat;0.0172107605812319!GO:0048144;fibroblast proliferation;0.0172107605812319!GO:0048145;regulation of fibroblast proliferation;0.0172107605812319!GO:0045926;negative regulation of growth;0.0173766324248597!GO:0048487;beta-tubulin binding;0.0174011094284671!GO:0046519;sphingoid metabolic process;0.0175197604760124!GO:0048037;cofactor binding;0.0175980555824869!GO:0030384;phosphoinositide metabolic process;0.0176191867864929!GO:0006506;GPI anchor biosynthetic process;0.0179510597150913!GO:0035035;histone acetyltransferase binding;0.0179510597150913!GO:0030137;COPI-coated vesicle;0.0179510597150913!GO:0043566;structure-specific DNA binding;0.0179510597150913!GO:0007033;vacuole organization and biogenesis;0.0186194437960843!GO:0030880;RNA polymerase complex;0.0187356357374887!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.019218204163968!GO:0008047;enzyme activator activity;0.019218204163968!GO:0001666;response to hypoxia;0.019218204163968!GO:0030128;clathrin coat of endocytic vesicle;0.0193060143951508!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0193060143951508!GO:0030122;AP-2 adaptor complex;0.0193060143951508!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0194725233306077!GO:0050657;nucleic acid transport;0.0194951677529129!GO:0051236;establishment of RNA localization;0.0194951677529129!GO:0050658;RNA transport;0.0194951677529129!GO:0003724;RNA helicase activity;0.0198645095259873!GO:0031272;regulation of pseudopodium formation;0.0201066108169952!GO:0031269;pseudopodium formation;0.0201066108169952!GO:0031344;regulation of cell projection organization and biogenesis;0.0201066108169952!GO:0031268;pseudopodium organization and biogenesis;0.0201066108169952!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0201066108169952!GO:0031274;positive regulation of pseudopodium formation;0.0201066108169952!GO:0006779;porphyrin biosynthetic process;0.0202759740173136!GO:0033014;tetrapyrrole biosynthetic process;0.0202759740173136!GO:0050178;phenylpyruvate tautomerase activity;0.0203668688659177!GO:0044433;cytoplasmic vesicle part;0.0208274660044358!GO:0051085;chaperone cofactor-dependent protein folding;0.0208298671391571!GO:0006403;RNA localization;0.0209114332357026!GO:0006749;glutathione metabolic process;0.0212294818676179!GO:0032507;maintenance of cellular protein localization;0.0213544235078478!GO:0019318;hexose metabolic process;0.0214991612540992!GO:0042987;amyloid precursor protein catabolic process;0.0216411656898392!GO:0051336;regulation of hydrolase activity;0.0217992801352326!GO:0008139;nuclear localization sequence binding;0.0218672852244923!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0218952635922696!GO:0005149;interleukin-1 receptor binding;0.0218952635922696!GO:0006505;GPI anchor metabolic process;0.0218952635922696!GO:0045792;negative regulation of cell size;0.0224328059390176!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0225367031643227!GO:0043549;regulation of kinase activity;0.0227387583977574!GO:0040008;regulation of growth;0.0230423276856354!GO:0030308;negative regulation of cell growth;0.0231064563087013!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0233034919917632!GO:0030041;actin filament polymerization;0.0233682093558599!GO:0008243;plasminogen activator activity;0.0234770440433863!GO:0016791;phosphoric monoester hydrolase activity;0.0237140145289038!GO:0035258;steroid hormone receptor binding;0.0240570455250052!GO:0007266;Rho protein signal transduction;0.0242403211374704!GO:0004674;protein serine/threonine kinase activity;0.0253815129020515!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0254248879557985!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0259344593406293!GO:0016311;dephosphorylation;0.0259344593406293!GO:0008629;induction of apoptosis by intracellular signals;0.0260223691399666!GO:0006007;glucose catabolic process;0.0264455524982991!GO:0005813;centrosome;0.0266109556853341!GO:0006891;intra-Golgi vesicle-mediated transport;0.0267692502451816!GO:0006401;RNA catabolic process;0.0277456663461628!GO:0019904;protein domain specific binding;0.0277456663461628!GO:0006520;amino acid metabolic process;0.0285081629922265!GO:0006354;RNA elongation;0.0286353394684237!GO:0043281;regulation of caspase activity;0.0290733312023827!GO:0040029;regulation of gene expression, epigenetic;0.0290733312023827!GO:0048146;positive regulation of fibroblast proliferation;0.0293365960399127!GO:0030134;ER to Golgi transport vesicle;0.0293385881353022!GO:0005996;monosaccharide metabolic process;0.029414598345861!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0296086960790196!GO:0010257;NADH dehydrogenase complex assembly;0.0296086960790196!GO:0033108;mitochondrial respiratory chain complex assembly;0.0296086960790196!GO:0005869;dynactin complex;0.0297767202408636!GO:0004680;casein kinase activity;0.0301038970715369!GO:0042168;heme metabolic process;0.0301038970715369!GO:0006950;response to stress;0.0304844204755178!GO:0031072;heat shock protein binding;0.0310269828782215!GO:0051128;regulation of cellular component organization and biogenesis;0.0319891393988884!GO:0006672;ceramide metabolic process;0.0320246109536103!GO:0000209;protein polyubiquitination;0.0327852619987485!GO:0031300;intrinsic to organelle membrane;0.0327992060641024!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0327992060641024!GO:0006497;protein amino acid lipidation;0.0329931076772101!GO:0006383;transcription from RNA polymerase III promoter;0.0335870074354796!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0345068453294846!GO:0000428;DNA-directed RNA polymerase complex;0.0345068453294846!GO:0016272;prefoldin complex;0.0349218409836672!GO:0003746;translation elongation factor activity;0.0349711212273105!GO:0008601;protein phosphatase type 2A regulator activity;0.0351796931949695!GO:0016717;oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water;0.0352221421585702!GO:0006730;one-carbon compound metabolic process;0.0357288690353491!GO:0003756;protein disulfide isomerase activity;0.0357653453933344!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0357653453933344!GO:0051651;maintenance of cellular localization;0.0363317700966906!GO:0008213;protein amino acid alkylation;0.0371319532300791!GO:0006479;protein amino acid methylation;0.0371319532300791!GO:0042158;lipoprotein biosynthetic process;0.03726419648292!GO:0051301;cell division;0.0377747198242496!GO:0008538;proteasome activator activity;0.0380285423706414!GO:0031543;peptidyl-proline dioxygenase activity;0.0383096986647159!GO:0030433;ER-associated protein catabolic process;0.0392529920374748!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0392529920374748!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.0394327787808205!GO:0016783;sulfurtransferase activity;0.039594143832914!GO:0004860;protein kinase inhibitor activity;0.0399505184780757!GO:0006897;endocytosis;0.0400348243027618!GO:0010324;membrane invagination;0.0400348243027618!GO:0000030;mannosyltransferase activity;0.0401417302610591!GO:0008186;RNA-dependent ATPase activity;0.0402605752215286!GO:0006633;fatty acid biosynthetic process;0.0402605752215286!GO:0030127;COPII vesicle coat;0.0402649916081796!GO:0012507;ER to Golgi transport vesicle membrane;0.0402649916081796!GO:0006783;heme biosynthetic process;0.0416201253170194!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.0418308678298088!GO:0006417;regulation of translation;0.041975663549173!GO:0006984;ER-nuclear signaling pathway;0.041975663549173!GO:0003729;mRNA binding;0.0420035031085882!GO:0046983;protein dimerization activity;0.0420887409905927!GO:0009166;nucleotide catabolic process;0.0421241050317239!GO:0015631;tubulin binding;0.0422909327372418!GO:0045859;regulation of protein kinase activity;0.0423811161203287!GO:0002009;morphogenesis of an epithelium;0.042924994956754!GO:0005815;microtubule organizing center;0.042924994956754!GO:0033559;unsaturated fatty acid metabolic process;0.0430196032196071!GO:0006636;unsaturated fatty acid biosynthetic process;0.0430196032196071!GO:0008033;tRNA processing;0.0430289815049298!GO:0051540;metal cluster binding;0.0432106170812353!GO:0051536;iron-sulfur cluster binding;0.0432106170812353!GO:0000049;tRNA binding;0.0432106170812353!GO:0065007;biological regulation;0.0432106170812353!GO:0008426;protein kinase C inhibitor activity;0.0432434327946239!GO:0017049;GTP-Rho binding;0.0434233786441401!GO:0033157;regulation of intracellular protein transport;0.0437498842303254!GO:0042306;regulation of protein import into nucleus;0.0437498842303254!GO:0006289;nucleotide-excision repair;0.0437498842303254!GO:0051289;protein homotetramerization;0.0454998764744103!GO:0043414;biopolymer methylation;0.0460256977903791!GO:0051881;regulation of mitochondrial membrane potential;0.0463136716221469!GO:0045936;negative regulation of phosphate metabolic process;0.0464174086960008!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0466428425558601!GO:0019798;procollagen-proline dioxygenase activity;0.0466545026205888!GO:0008154;actin polymerization and/or depolymerization;0.0473150195403051!GO:0006739;NADP metabolic process;0.0473150195403051!GO:0007034;vacuolar transport;0.047509303807008!GO:0045806;negative regulation of endocytosis;0.0477162374854734!GO:0016485;protein processing;0.0482000074359862!GO:0009303;rRNA transcription;0.0487403189704061!GO:0012506;vesicle membrane;0.0492669021015085!GO:0006611;protein export from nucleus;0.0495287747576992 | |||
|sample_id=11681 | |sample_id=11681 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=bladder | |sample_tissue=bladder | ||
|top_motifs=TP53:3.0269227113;PPARG:2.2320207601;TFCP2:2.04961260874;ZEB1:1.95521158261;TBX4,5:1.89270941499;HAND1,2:1.77736283905;XCPE1{core}:1.77636372667;ZNF423:1.72343624177;VSX1,2:1.72306856181;SNAI1..3:1.69563763438;ZNF148:1.68471657016;MYOD1:1.33167179217;TBP:1.26388184885;GTF2A1,2:1.20399003696;NR5A1,2:1.19534226961;SP1:1.16569780368;TFAP2{A,C}:1.14677294336;GLI1..3:1.06833246764;ADNP_IRX_SIX_ZHX:1.02955240679;TEAD1:0.976898028238;NKX2-3_NKX2-5:0.923177022864;EBF1:0.911101194786;LMO2:0.910074824585;FOXM1:0.882649394185;ONECUT1,2:0.784971248321;ZIC1..3:0.738807399224;POU2F1..3:0.724814701011;PAX1,9:0.69317861025;TLX1..3_NFIC{dimer}:0.680378689241;ZBTB6:0.645474637628;FOS_FOS{B,L1}_JUN{B,D}:0.631150830055;IKZF1:0.594729097237;ZNF238:0.594333835941;RREB1:0.526345437026;ESR1:0.518583483096;POU6F1:0.517952861121;TFAP4:0.509716841287;RXR{A,B,G}:0.506773283995;TEF:0.504569076377;LHX3,4:0.488136620566;MTF1:0.486062977728;GZF1:0.468994118379;BACH2:0.468542982581;SMAD1..7,9:0.462426531987;ARID5B:0.421413289048;FOSL2:0.366282090257;RXRA_VDR{dimer}:0.354144811573;MAZ:0.310204200577;NANOG:0.30212750885;bHLH_family:0.280565083134;REST:0.267198322616;TOPORS:0.24636562382;EP300:0.234061301647;HIC1:0.213878467114;MED-1{core}:0.191965416953;HMX1:0.189309779426;HNF4A_NR2F1,2:0.185571308044;UFEwm:0.162663445521;STAT5{A,B}:0.121873865741;FOXL1:0.0806148101763;POU1F1:0.0726271036068;SOX2:0.0700922911451;TFAP2B:0.0655297444902;CEBPA,B_DDIT3:0.0630436969344;GFI1B:0.0156211066402;NFE2:0.013900930394;LEF1_TCF7_TCF7L1,2:0.00156229847333;RBPJ:-0.00522772843709;SPZ1:-0.0254860741463;NKX2-2,8:-0.0279775285193;HNF1A:-0.0385444232596;HOX{A6,A7,B6,B7}:-0.0427559460106;HLF:-0.0772119919766;PITX1..3:-0.0776099981922;FOXQ1:-0.0781403237692;GTF2I:-0.116572247682;HOX{A4,D4}:-0.122036298613;SOX17:-0.127205270703;NKX3-2:-0.131384875142;NFKB1_REL_RELA:-0.138222338534;TLX2:-0.144591546835;NR1H4:-0.164413407148;ALX4:-0.189880420726;KLF4:-0.196634623852;AR:-0.205367322865;NFIL3:-0.206856608313;HSF1,2:-0.219075792075;NR6A1:-0.227858250969;T:-0.228714982331;NR3C1:-0.247790642824;IRF7:-0.253454575382;PAX5:-0.266356834779;GATA6:-0.301407329215;OCT4_SOX2{dimer}:-0.323761532841;STAT2,4,6:-0.328200267968;DBP:-0.339630597775;PAX4:-0.340258765786;CDC5L:-0.346729851563;HOX{A5,B5}:-0.361420619456;ETS1,2:-0.390581259344;JUN:-0.3973506745;NFE2L2:-0.434005698406;MAFB:-0.440656210123;SRF:-0.450498907856;NHLH1,2:-0.45824496459;SPIB:-0.458978056522;PDX1:-0.474800742778;POU5F1:-0.475510080186;MYBL2:-0.479754805514;CRX:-0.483796830334;AIRE:-0.494539221278;ZFP161:-0.499944161292;SOX{8,9,10}:-0.505963421474;EGR1..3:-0.509034868835;ATF2:-0.520739083885;MEF2{A,B,C,D}:-0.532399056194;PBX1:-0.53304316599;NKX2-1,4:-0.54017684141;NFE2L1:-0.544628667815;PAX2:-0.550596453966;POU3F1..4:-0.550971286486;MTE{core}:-0.57306622028;ESRRA:-0.593408050853;PATZ1:-0.601459854591;FOX{F1,F2,J1}:-0.619204661174;HES1:-0.638565346571;PAX6:-0.651373188837;SPI1:-0.663817476939;ZNF143:-0.674994343417;TFDP1:-0.701090419625;RUNX1..3:-0.704330770543;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.714513940908;RORA:-0.719685748961;MYFfamily:-0.762741514139;HIF1A:-0.763595648791;FOXN1:-0.769358921168;ATF6:-0.778989382142;IRF1,2:-0.807012967133;FOX{D1,D2}:-0.813830094934;CUX2:-0.816392701345;RFX1:-0.820705297222;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.829029733433;TAL1_TCF{3,4,12}:-0.870035040741;GCM1,2:-0.871583918472;NFY{A,B,C}:-0.898224053019;PAX8:-0.928739479285;GFI1:-0.934317648317;SOX5:-0.943207869677;EVI1:-0.954097243769;RFX2..5_RFXANK_RFXAP:-0.956732430061;ZNF384:-0.957793868299;NFIX:-0.984743231594;CDX1,2,4:-0.986149677107;MYB:-1.00427760368;YY1:-1.00961008925;ATF4:-1.01368364633;FOX{I1,J2}:-1.0144474307;E2F1..5:-1.05640931975;NFATC1..3:-1.06960317519;FOXO1,3,4:-1.0712086861;FOXP1:-1.11311520093;ATF5_CREB3:-1.11441700369;EN1,2:-1.12631453983;PRDM1:-1.13194907093;ELF1,2,4:-1.1569882312;DMAP1_NCOR{1,2}_SMARC:-1.1730714569;PAX3,7:-1.17394918179;TGIF1:-1.20473539708;XBP1:-1.21364089308;PRRX1,2:-1.21994386752;HOXA9_MEIS1:-1.22075029726;NKX6-1,2:-1.22684972661;ELK1,4_GABP{A,B1}:-1.23236719734;FOXA2:-1.23429988984;MZF1:-1.25635092825;ALX1:-1.26237120348;BREu{core}:-1.285956956;CREB1:-1.37088454013;SREBF1,2:-1.38212585954;NANOG{mouse}:-1.3863601714;NRF1:-1.45036526549;ZBTB16:-1.4801016311;FOXD3:-1.48887378907;IKZF2:-1.49844586408;HMGA1,2:-1.50333633833;BPTF:-1.54944256563;FOXP3:-1.61581255164;HBP1_HMGB_SSRP1_UBTF:-1.62266343838;GATA4:-1.62910253114;STAT1,3:-1.70025895859;NKX3-1:-1.71103315783;AHR_ARNT_ARNT2:-1.84844135115 | |top_motifs=TP53:3.0269227113;PPARG:2.2320207601;TFCP2:2.04961260874;ZEB1:1.95521158261;TBX4,5:1.89270941499;HAND1,2:1.77736283905;XCPE1{core}:1.77636372667;ZNF423:1.72343624177;VSX1,2:1.72306856181;SNAI1..3:1.69563763438;ZNF148:1.68471657016;MYOD1:1.33167179217;TBP:1.26388184885;GTF2A1,2:1.20399003696;NR5A1,2:1.19534226961;SP1:1.16569780368;TFAP2{A,C}:1.14677294336;GLI1..3:1.06833246764;ADNP_IRX_SIX_ZHX:1.02955240679;TEAD1:0.976898028238;NKX2-3_NKX2-5:0.923177022864;EBF1:0.911101194786;LMO2:0.910074824585;FOXM1:0.882649394185;ONECUT1,2:0.784971248321;ZIC1..3:0.738807399224;POU2F1..3:0.724814701011;PAX1,9:0.69317861025;TLX1..3_NFIC{dimer}:0.680378689241;ZBTB6:0.645474637628;FOS_FOS{B,L1}_JUN{B,D}:0.631150830055;IKZF1:0.594729097237;ZNF238:0.594333835941;RREB1:0.526345437026;ESR1:0.518583483096;POU6F1:0.517952861121;TFAP4:0.509716841287;RXR{A,B,G}:0.506773283995;TEF:0.504569076377;LHX3,4:0.488136620566;MTF1:0.486062977728;GZF1:0.468994118379;BACH2:0.468542982581;SMAD1..7,9:0.462426531987;ARID5B:0.421413289048;FOSL2:0.366282090257;RXRA_VDR{dimer}:0.354144811573;MAZ:0.310204200577;NANOG:0.30212750885;bHLH_family:0.280565083134;REST:0.267198322616;TOPORS:0.24636562382;EP300:0.234061301647;HIC1:0.213878467114;MED-1{core}:0.191965416953;HMX1:0.189309779426;HNF4A_NR2F1,2:0.185571308044;UFEwm:0.162663445521;STAT5{A,B}:0.121873865741;FOXL1:0.0806148101763;POU1F1:0.0726271036068;SOX2:0.0700922911451;TFAP2B:0.0655297444902;CEBPA,B_DDIT3:0.0630436969344;GFI1B:0.0156211066402;NFE2:0.013900930394;LEF1_TCF7_TCF7L1,2:0.00156229847333;RBPJ:-0.00522772843709;SPZ1:-0.0254860741463;NKX2-2,8:-0.0279775285193;HNF1A:-0.0385444232596;HOX{A6,A7,B6,B7}:-0.0427559460106;HLF:-0.0772119919766;PITX1..3:-0.0776099981922;FOXQ1:-0.0781403237692;GTF2I:-0.116572247682;HOX{A4,D4}:-0.122036298613;SOX17:-0.127205270703;NKX3-2:-0.131384875142;NFKB1_REL_RELA:-0.138222338534;TLX2:-0.144591546835;NR1H4:-0.164413407148;ALX4:-0.189880420726;KLF4:-0.196634623852;AR:-0.205367322865;NFIL3:-0.206856608313;HSF1,2:-0.219075792075;NR6A1:-0.227858250969;T:-0.228714982331;NR3C1:-0.247790642824;IRF7:-0.253454575382;PAX5:-0.266356834779;GATA6:-0.301407329215;OCT4_SOX2{dimer}:-0.323761532841;STAT2,4,6:-0.328200267968;DBP:-0.339630597775;PAX4:-0.340258765786;CDC5L:-0.346729851563;HOX{A5,B5}:-0.361420619456;ETS1,2:-0.390581259344;JUN:-0.3973506745;NFE2L2:-0.434005698406;MAFB:-0.440656210123;SRF:-0.450498907856;NHLH1,2:-0.45824496459;SPIB:-0.458978056522;PDX1:-0.474800742778;POU5F1:-0.475510080186;MYBL2:-0.479754805514;CRX:-0.483796830334;AIRE:-0.494539221278;ZFP161:-0.499944161292;SOX{8,9,10}:-0.505963421474;EGR1..3:-0.509034868835;ATF2:-0.520739083885;MEF2{A,B,C,D}:-0.532399056194;PBX1:-0.53304316599;NKX2-1,4:-0.54017684141;NFE2L1:-0.544628667815;PAX2:-0.550596453966;POU3F1..4:-0.550971286486;MTE{core}:-0.57306622028;ESRRA:-0.593408050853;PATZ1:-0.601459854591;FOX{F1,F2,J1}:-0.619204661174;HES1:-0.638565346571;PAX6:-0.651373188837;SPI1:-0.663817476939;ZNF143:-0.674994343417;TFDP1:-0.701090419625;RUNX1..3:-0.704330770543;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.714513940908;RORA:-0.719685748961;MYFfamily:-0.762741514139;HIF1A:-0.763595648791;FOXN1:-0.769358921168;ATF6:-0.778989382142;IRF1,2:-0.807012967133;FOX{D1,D2}:-0.813830094934;CUX2:-0.816392701345;RFX1:-0.820705297222;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.829029733433;TAL1_TCF{3,4,12}:-0.870035040741;GCM1,2:-0.871583918472;NFY{A,B,C}:-0.898224053019;PAX8:-0.928739479285;GFI1:-0.934317648317;SOX5:-0.943207869677;EVI1:-0.954097243769;RFX2..5_RFXANK_RFXAP:-0.956732430061;ZNF384:-0.957793868299;NFIX:-0.984743231594;CDX1,2,4:-0.986149677107;MYB:-1.00427760368;YY1:-1.00961008925;ATF4:-1.01368364633;FOX{I1,J2}:-1.0144474307;E2F1..5:-1.05640931975;NFATC1..3:-1.06960317519;FOXO1,3,4:-1.0712086861;FOXP1:-1.11311520093;ATF5_CREB3:-1.11441700369;EN1,2:-1.12631453983;PRDM1:-1.13194907093;ELF1,2,4:-1.1569882312;DMAP1_NCOR{1,2}_SMARC:-1.1730714569;PAX3,7:-1.17394918179;TGIF1:-1.20473539708;XBP1:-1.21364089308;PRRX1,2:-1.21994386752;HOXA9_MEIS1:-1.22075029726;NKX6-1,2:-1.22684972661;ELK1,4_GABP{A,B1}:-1.23236719734;FOXA2:-1.23429988984;MZF1:-1.25635092825;ALX1:-1.26237120348;BREu{core}:-1.285956956;CREB1:-1.37088454013;SREBF1,2:-1.38212585954;NANOG{mouse}:-1.3863601714;NRF1:-1.45036526549;ZBTB16:-1.4801016311;FOXD3:-1.48887378907;IKZF2:-1.49844586408;HMGA1,2:-1.50333633833;BPTF:-1.54944256563;FOXP3:-1.61581255164;HBP1_HMGB_SSRP1_UBTF:-1.62266343838;GATA4:-1.62910253114;STAT1,3:-1.70025895859;NKX3-1:-1.71103315783;AHR_ARNT_ARNT2:-1.84844135115 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11681-122H7;search_select_hide=table117:FF:11681-122H7 | |||
}} | }} | ||
Latest revision as of 18:14, 4 June 2020
| Name: | Urothelial Cells, donor3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12122 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12122
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12122
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.563 |
| 10 | 10 | 0.54 |
| 100 | 100 | 0.708 |
| 101 | 101 | 0.292 |
| 102 | 102 | 0.323 |
| 103 | 103 | 0.206 |
| 104 | 104 | 0.264 |
| 105 | 105 | 0.108 |
| 106 | 106 | 0.0139 |
| 107 | 107 | 0.00651 |
| 108 | 108 | 0.187 |
| 109 | 109 | 0.0478 |
| 11 | 11 | 0.134 |
| 110 | 110 | 0.256 |
| 111 | 111 | 0.189 |
| 112 | 112 | 0.329 |
| 113 | 113 | 0.243 |
| 114 | 114 | 0.367 |
| 115 | 115 | 0.1 |
| 116 | 116 | 0.552 |
| 117 | 117 | 0.716 |
| 118 | 118 | 0.796 |
| 119 | 119 | 0.0598 |
| 12 | 12 | 0.663 |
| 120 | 120 | 0.0726 |
| 121 | 121 | 0.547 |
| 122 | 122 | 0.355 |
| 123 | 123 | 0.962 |
| 124 | 124 | 0.296 |
| 125 | 125 | 0.451 |
| 126 | 126 | 0.691 |
| 127 | 127 | 0.1 |
| 128 | 128 | 0.0299 |
| 129 | 129 | 0.0317 |
| 13 | 13 | 0.296 |
| 130 | 130 | 0.474 |
| 131 | 131 | 0.873 |
| 132 | 132 | 0.247 |
| 133 | 133 | 0.0158 |
| 134 | 134 | 0.339 |
| 135 | 135 | 0.44 |
| 136 | 136 | 0.913 |
| 137 | 137 | 0.284 |
| 138 | 138 | 0.8 |
| 139 | 139 | 0.219 |
| 14 | 14 | 0.675 |
| 140 | 140 | 0.444 |
| 141 | 141 | 0.913 |
| 142 | 142 | 0.0151 |
| 143 | 143 | 0.256 |
| 144 | 144 | 0.553 |
| 145 | 145 | 0.124 |
| 146 | 146 | 0.0438 |
| 147 | 147 | 0.38 |
| 148 | 148 | 0.839 |
| 149 | 149 | 0.248 |
| 15 | 15 | 0.596 |
| 150 | 150 | 0.243 |
| 151 | 151 | 0.275 |
| 152 | 152 | 0.034 |
| 153 | 153 | 0.473 |
| 154 | 154 | 0.713 |
| 155 | 155 | 0.266 |
| 156 | 156 | 0.0934 |
| 157 | 157 | 0.336 |
| 158 | 158 | 0.851 |
| 159 | 159 | 0.853 |
| 16 | 16 | 0.152 |
| 160 | 160 | 0.0917 |
| 161 | 161 | 0.306 |
| 162 | 162 | 0.104 |
| 163 | 163 | 0.931 |
| 164 | 164 | 0.851 |
| 165 | 165 | 0.326 |
| 166 | 166 | 0.861 |
| 167 | 167 | 0.357 |
| 168 | 168 | 0.469 |
| 169 | 169 | 0.0449 |
| 17 | 17 | 0.103 |
| 18 | 18 | 0.215 |
| 19 | 19 | 0.348 |
| 2 | 2 | 0.139 |
| 20 | 20 | 0.709 |
| 21 | 21 | 0.919 |
| 22 | 22 | 0.207 |
| 23 | 23 | 0.0928 |
| 24 | 24 | 0.259 |
| 25 | 25 | 0.689 |
| 26 | 26 | 0.261 |
| 27 | 27 | 0.336 |
| 28 | 28 | 0.941 |
| 29 | 29 | 0.653 |
| 3 | 3 | 0.442 |
| 30 | 30 | 0.203 |
| 31 | 31 | 0.375 |
| 32 | 32 | 0.419 |
| 33 | 33 | 0.538 |
| 34 | 34 | 0.385 |
| 35 | 35 | 0.544 |
| 36 | 36 | 0.829 |
| 37 | 37 | 0.453 |
| 38 | 38 | 0.252 |
| 39 | 39 | 0.272 |
| 4 | 4 | 0.334 |
| 40 | 40 | 0.0114 |
| 41 | 41 | 0.816 |
| 42 | 42 | 0.763 |
| 43 | 43 | 0.293 |
| 44 | 44 | 0.217 |
| 45 | 45 | 0.167 |
| 46 | 46 | 0.31 |
| 47 | 47 | 0.376 |
| 48 | 48 | 0.23 |
| 49 | 49 | 0.446 |
| 5 | 5 | 0.79 |
| 50 | 50 | 0.45 |
| 51 | 51 | 0.449 |
| 52 | 52 | 0.2 |
| 53 | 53 | 0.962 |
| 54 | 54 | 0.356 |
| 55 | 55 | 0.315 |
| 56 | 56 | 0.286 |
| 57 | 57 | 0.328 |
| 58 | 58 | 0.729 |
| 59 | 59 | 0.0325 |
| 6 | 6 | 0.513 |
| 60 | 60 | 0.126 |
| 61 | 61 | 0.848 |
| 62 | 62 | 0.76 |
| 63 | 63 | 0.151 |
| 64 | 64 | 0.275 |
| 65 | 65 | 0.0622 |
| 66 | 66 | 0.82 |
| 67 | 67 | 0.732 |
| 68 | 68 | 0.665 |
| 69 | 69 | 0.0422 |
| 7 | 7 | 0.638 |
| 70 | 70 | 2.50053e-4 |
| 71 | 71 | 0.364 |
| 72 | 72 | 0.876 |
| 73 | 73 | 0.0572 |
| 74 | 74 | 0.0225 |
| 75 | 75 | 0.401 |
| 76 | 76 | 0.626 |
| 77 | 77 | 0.0157 |
| 78 | 78 | 0.157 |
| 79 | 79 | 0.161 |
| 8 | 8 | 0.147 |
| 80 | 80 | 0.824 |
| 81 | 81 | 0.774 |
| 82 | 82 | 0.191 |
| 83 | 83 | 0.71 |
| 84 | 84 | 0.855 |
| 85 | 85 | 0.134 |
| 86 | 86 | 0.934 |
| 87 | 87 | 0.359 |
| 88 | 88 | 0.223 |
| 89 | 89 | 0.0732 |
| 9 | 9 | 0.503 |
| 90 | 90 | 0.341 |
| 91 | 91 | 0.252 |
| 92 | 92 | 0.176 |
| 93 | 93 | 0.853 |
| 94 | 94 | 0.371 |
| 95 | 95 | 0.249 |
| 96 | 96 | 0.899 |
| 97 | 97 | 0.908 |
| 98 | 98 | 0.418 |
| 99 | 99 | 0.0375 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12122
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000191 human urothelial cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000244 (transitional epithelial cell)
0000731 (urothelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000483 (epithelium)
0005910 (transitional epithelium)
0000479 (tissue)
0004119 (endoderm-derived structure)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0005911 (endo-epithelium)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000486 (multilaminar epithelium)
0010317 (germ layer / neural crest derived structure)
0000365 (urothelium)
0001008 (renal system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000191 (human urothelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
