FF:11754-123G8: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005645 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008553;DRR009425;DRZ000850;DRZ002235;DRZ012200;DRZ013585 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007100,UBERON:0000948,UBERON:0002384,UBERON:0000479,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0010317,UBERON:0004535,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0002494,CL:0000034,CL:0000569 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000271 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520cardiac%252c%2520donor3.CNhs12370.11754-123G8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520cardiac%252c%2520donor3.CNhs12370.11754-123G8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520cardiac%252c%2520donor3.CNhs12370.11754-123G8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520cardiac%252c%2520donor3.CNhs12370.11754-123G8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520cardiac%252c%2520donor3.CNhs12370.11754-123G8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11754-123G8 | |id=FF:11754-123G8 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000271 | ||
|is_obsolete= | |||
|library_id=CNhs12370 | |||
|library_id_phase_based=2:CNhs12370 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11754 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11754 | |||
|name=mesenchymal precursor cell - cardiac, donor3 | |name=mesenchymal precursor cell - cardiac, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12370,LSID914,release011,COMPLETED | |profile_hcage=CNhs12370,LSID914,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.0427569474686112,0,-0.214615786170272,0.0558241544955743,0,0,0,0.025406413116561,0,0,0,0,0,0,0,0.117561082617775,0,0.0566605755255019,0,0,0,0,0,0.282060549237469,0,0,0.0770269960950672,0,0,0,0,0,0,0,0,0,0,0.209983585873929,0,-0.114526543954392,0.0627463460232421,0.117561082617775,0,0,0,0,0,0,0.0345655201960531,0,0,0,0.0627463460232421,0,0,0.0627463460232421,0.22275069667907,0,0,-0.0345972811898549,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.140490216071482,0.031373173011621,0,0,0.000795004591420415,0,0,0.0364087615578728,0.031373173011621,0,0,-0.090856090297372,0.0640524955778895,0,0.28614718946913,0.175462805090881,0,-0.0352890052144643,0.13274847455538,0,0,0,0,0,0,0.0627463460232421,0,0,0,0,0,0,0,0,0,0,-0.06500042091084,0.0627463460232421,0,0,-0.0933866530657625,-0.384698541292521,0,0,0.0627463460232421,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0352890052144643,0,0,0.0627463460232421,0,0,0.0627463460232421,0,0,0.28614718946913,0,0,-0.037195289411635,0,-0.094067773246482,-0.0807687965002298,0,0,0.103076745160811,0,0.0627463460232421,0,0,0.117561082617775,0,0.0627463460232421,0.117561082617775,0,0.394527512607796,0,0.269330506332361,0,0.117561082617775,0.117561082617775,0,0.106241160959402,0.324363421452881,0,0.0543229271498215,-0.00559791505412612,0,0,0,0,0.397410713023714,0,-0.120879483793741,0.237022889598258,0.0380656799917745,0.262355427364216,0.00872849385702795,0,0,0,0.162392576785335,-0.0676589187692345,0,0,0.00308659029137868,-0.0564831765174065,0,0,1.4646194738592,0,0.0642139428850177,0.0242543077754068,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144360669222016,-0.264242250655727,0,0,0,0,-0.179134594700683,0,0,0.0339979900300629,0.0193701410953475,-0.0282150946971628,-0.208458808400694,0,-0.0924061411359837,-0.0504459294344897,-0.43044296308226,-0.0691670744954599,0.172341208550537,0.190036725955679,0.0107230271729546,0.0364087615578728,0.0529925317620261,-0.0451190289514018,-0.116786959088124,0,0.456291823452152,-0.237408812054135,0,0,0,-0.0625954544678178,0,-0.095311668739619,-0.110096268971247,-0.0353517255289606,-0.0403140132576971,-0.138289006108401,-0.0508949863429905,0.212951505401163,-0.0081593554450495,-0.171289263427465,0,0.6845610975749,0,0.117561082617775,0,0.0289598418839792,0.125251428609255,-0.113929160116642,0,-0.133051851629219,-0.00559791505412612,0,0.07859200158806,-0.118433561554149,0,0,-0.0768802178093744,0,0,0,0,0.0627463460232421,0.0990574520529668,-0.253344953561036,-0.170109215532303,0,-0.080128283001569,0,-0.0045892175607853,0,-0.115408962833976,-0.0846096789930306,-0.162514011299019,-0.242136933267157,0,0.0323291749519178,0.0907580519951927,0.0847421877475024,0.010543908538004,-0.0584468268118252,0.0457925879521677,0.0201550588138238,-0.166904449496782,0.1910201221119,0.0439901249294183,0.262798777706474,0,0.208013730419721,-0.246559417691783,-0.0514369327644113,-0.0424346376912185,0.28614718946913,-0.165007056191375,0,-0.186365288097044,0,-0.177417797897259,0.0209577501419782,-0.273063103770894,0.111374171097153,0,-0.116053967527907,0.465755765553581,0,-0.0226514890854752,0.0179642561328421,0,0.169375974587036,-0.217590727727124,-0.180277254852968,0.232665126354702,-0.000950079202339305,0.21058630353882,0.117561082617775,0,0.12580790368277,-0.172729691741147,0,-0.112292020696786,-0.201918768226766,-0.147054064596632,0.00159000918284083,0.0627463460232421,0,-0.188538361394062,0,0,-0.172989349888289,0.0417822325386217,0.0406130536673655,0.0664167164349199,0,-0.0772496364426345,0,0,-0.177527765965176,0,0.0584427099240655,0,0,0.123001863975406,0.0933554728837967,0,0.031373173011621,0.80890623424124,-0.0052564678050011,0,0,0,0,0,0,0,-0.573138534357437,0.14706368284559,0,0,0,0.0627463460232421,0,0.740968606219088,0,0.0560695943152981,0,0.0627463460232421,0.488768667684314,0.0345373400348864,0.0869661701975092,0,0,0,0,0.326727948159075,-0.140490216071482,0,0.0343635643121609,0.0627463460232421,0,0,0,-0.0861409897892114,0,0,0,0,-0.057730457053664,-0.101888573715933,0,0,0,0.26549694911076,0,0,0,0.0246865735640719,-0.0870332006750403,0,0,0.166365767563206,0,-0.0923983292422772,0.0359792030709335,0,0.0421655061190377,-0.0491436437138772,-0.0482734942124317,0,0,-0.198600785766645,0,0.141893676713784,0.293703144833748,-0.00454558611017664,0,0.0114203688980873,0,0,0,0,0,0.350925610181762,-0.151568166376514,0,0,0,0,0,0,0,0,0,0,0,0.0709062312051882,0.0740022141512822,0.209983585873929,0,0,0,0,0,0,0.235848138232049,-0.111777388032961,0,0,0,0,0,0,0,0,-0.151682881741567,0,0,0.031373173011621,0,0,0.22275069667907,0,0,0,0,0.0489019629679065,0,0,-0.214615786170272,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.00575800341767285,-0.376210705495697,0,0,0,0,0,0,0,0.0449097597155851,0,0.0627463460232421,0,0,0.00367670890879769,0,0,0,-0.0420500387659143,0,-0.0427569474686112,0,0,0,0,0,0.0627463460232421,0,0,0,0,0,0,0,0,0,0,0,0.159871528960838,0,0,0,0.291797072052009,0.0553847975470505,0.112001479915365,-0.050283956390665,0,0,0.125239833490011,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0627463460232421,0,0,0,0,0,0,-0.0299947544732938,0,0,0,0,0,0,0,0.282060549237469,0.0627463460232421,0,0.109821326242926,0,0,0,0,0,0,0.0514994514597872,0.461922495117927,0.0245319150809433,0,0,0,0.135623650270308,0.0627463460232421,0,0,0.0627463460232421,0.36616132651084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0627463460232421,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0566605755255019,0,0,0,0,0,0,0,0,0,0,0,0,0.0587805413088875,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.249732884086505,0,0,0,0,0,0,0,0.0287349827478256,0.0627463460232421,0,0,0,0,0,0,0.166226270809793,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0627463460232421,-0.0172721222453963,0,0,0,-0.0468599588472511,0,0,0,0,0,0,0.0627463460232421,0,0.117561082617775,0,0,0,0,0,0,0,0,0,0,0,0.117561082617775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.239202596140602,0,0,0,0,0,0,0,0,0.209983585873929,0,0,0,0,0.118004195570738,0,0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| |||
|rna_box=123 | |rna_box=123 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=43.19475 | |rna_weight_ug=43.19475 | ||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;7.24016713504823e-231!GO:0005737;cytoplasm;2.40079395285291e-190!GO:0043231;intracellular membrane-bound organelle;9.77250704983332e-182!GO:0043227;membrane-bound organelle;2.1419722375895e-181!GO:0043226;organelle;4.2605363600351e-181!GO:0043229;intracellular organelle;8.37145613658097e-181!GO:0044444;cytoplasmic part;1.13316436746124e-139!GO:0044422;organelle part;2.06019641780819e-136!GO:0044446;intracellular organelle part;5.85907290692222e-135!GO:0032991;macromolecular complex;4.62378261278198e-92!GO:0030529;ribonucleoprotein complex;3.00584237935953e-89!GO:0044237;cellular metabolic process;2.57235841911011e-84!GO:0044238;primary metabolic process;2.57235841911011e-84!GO:0005515;protein binding;1.20832155819125e-77!GO:0043170;macromolecule metabolic process;1.5536979424354e-76!GO:0043233;organelle lumen;5.50115618789652e-71!GO:0031974;membrane-enclosed lumen;5.50115618789652e-71!GO:0044428;nuclear part;2.94466247935571e-66!GO:0003723;RNA binding;4.21490208256952e-66!GO:0005739;mitochondrion;9.52817712366963e-66!GO:0005634;nucleus;2.27678793191796e-65!GO:0005840;ribosome;5.06725488260793e-55!GO:0006412;translation;1.20147636503409e-51!GO:0031090;organelle membrane;2.17749850467924e-51!GO:0003735;structural constituent of ribosome;8.19522391980003e-49!GO:0019538;protein metabolic process;4.73646871544815e-48!GO:0006396;RNA processing;5.77016766027969e-46!GO:0009058;biosynthetic process;5.28782901495609e-45!GO:0016043;cellular component organization and biogenesis;5.01485706566393e-44!GO:0043234;protein complex;1.02826825004898e-43!GO:0044429;mitochondrial part;1.68297807635597e-43!GO:0044260;cellular macromolecule metabolic process;1.61013574628216e-42!GO:0044267;cellular protein metabolic process;5.5447045909444e-42!GO:0033279;ribosomal subunit;5.92192052957114e-42!GO:0015031;protein transport;6.17496453620133e-42!GO:0033036;macromolecule localization;1.33309777058211e-41!GO:0009059;macromolecule biosynthetic process;2.35737169395043e-41!GO:0005829;cytosol;2.63458193328598e-41!GO:0031981;nuclear lumen;1.46949029234845e-40!GO:0044249;cellular biosynthetic process;1.99323422834093e-40!GO:0043283;biopolymer metabolic process;1.84526426971067e-39!GO:0045184;establishment of protein localization;3.48931196683525e-39!GO:0031967;organelle envelope;4.03037802457107e-39!GO:0008104;protein localization;7.45307275492246e-39!GO:0031975;envelope;9.63013579511017e-39!GO:0010467;gene expression;2.75285425002091e-38!GO:0016071;mRNA metabolic process;3.73759079620535e-35!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.40055239097917e-34!GO:0008380;RNA splicing;7.92476239733009e-34!GO:0046907;intracellular transport;1.12100052597832e-31!GO:0006397;mRNA processing;2.88616258895712e-31!GO:0022613;ribonucleoprotein complex biogenesis and assembly;5.05782452717111e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);5.77723104712491e-30!GO:0005740;mitochondrial envelope;5.97011848796444e-29!GO:0043228;non-membrane-bound organelle;1.35462556427295e-28!GO:0043232;intracellular non-membrane-bound organelle;1.35462556427295e-28!GO:0065003;macromolecular complex assembly;2.05308617007431e-28!GO:0006996;organelle organization and biogenesis;5.58134101205575e-28!GO:0006886;intracellular protein transport;7.39332673682894e-28!GO:0031966;mitochondrial membrane;7.76894174853999e-27!GO:0019866;organelle inner membrane;4.61496324595159e-26!GO:0022607;cellular component assembly;5.06441964768153e-25!GO:0005783;endoplasmic reticulum;1.44226812762638e-24!GO:0005743;mitochondrial inner membrane;1.69036452902085e-24!GO:0005681;spliceosome;3.24406560404541e-24!GO:0006119;oxidative phosphorylation;5.52480505001814e-24!GO:0005654;nucleoplasm;6.21409834679812e-24!GO:0044445;cytosolic part;6.21409834679812e-24!GO:0006259;DNA metabolic process;2.12801323099015e-23!GO:0012505;endomembrane system;5.57348246119859e-22!GO:0015935;small ribosomal subunit;1.19191251252038e-21!GO:0015934;large ribosomal subunit;2.56084376087371e-21!GO:0006457;protein folding;3.11427715559219e-21!GO:0007049;cell cycle;1.70677590227028e-20!GO:0044455;mitochondrial membrane part;2.40100908297561e-20!GO:0016462;pyrophosphatase activity;2.60344463144618e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.67724785836479e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;5.4791048170927e-20!GO:0051649;establishment of cellular localization;7.93971695910928e-20!GO:0044432;endoplasmic reticulum part;1.07323768487926e-19!GO:0051641;cellular localization;1.15715114529674e-19!GO:0017111;nucleoside-triphosphatase activity;2.26782862802839e-19!GO:0044451;nucleoplasm part;2.53834294419545e-19!GO:0003676;nucleic acid binding;2.6572829044458e-19!GO:0000166;nucleotide binding;2.05225765310334e-18!GO:0005746;mitochondrial respiratory chain;4.93370862306957e-18!GO:0031980;mitochondrial lumen;5.78744846392307e-18!GO:0005759;mitochondrial matrix;5.78744846392307e-18!GO:0022618;protein-RNA complex assembly;8.18127465658004e-18!GO:0048770;pigment granule;1.69932645382364e-17!GO:0042470;melanosome;1.69932645382364e-17!GO:0005730;nucleolus;1.79100457193042e-17!GO:0051186;cofactor metabolic process;3.17768581219346e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.31071434177523e-17!GO:0008134;transcription factor binding;4.22956256552471e-17!GO:0005794;Golgi apparatus;9.61145767342824e-17!GO:0000502;proteasome complex (sensu Eukaryota);9.61145767342824e-17!GO:0022402;cell cycle process;4.50394304049575e-16!GO:0050136;NADH dehydrogenase (quinone) activity;4.94791204601321e-16!GO:0003954;NADH dehydrogenase activity;4.94791204601321e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.94791204601321e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);6.6129963553383e-16!GO:0005761;mitochondrial ribosome;1.2271291697143e-15!GO:0000313;organellar ribosome;1.2271291697143e-15!GO:0016070;RNA metabolic process;2.2276677883571e-15!GO:0008135;translation factor activity, nucleic acid binding;6.22906171500838e-15!GO:0006605;protein targeting;6.63831424910425e-15!GO:0000278;mitotic cell cycle;7.0932080526466e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);8.73181477113699e-15!GO:0043285;biopolymer catabolic process;1.09275682445486e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.46290184311211e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;1.83830462589486e-14!GO:0044265;cellular macromolecule catabolic process;2.26185941551379e-14!GO:0042775;organelle ATP synthesis coupled electron transport;2.26185941551379e-14!GO:0042773;ATP synthesis coupled electron transport;2.26185941551379e-14!GO:0016874;ligase activity;2.71375462589679e-14!GO:0030964;NADH dehydrogenase complex (quinone);3.15704506740839e-14!GO:0045271;respiratory chain complex I;3.15704506740839e-14!GO:0005747;mitochondrial respiratory chain complex I;3.15704506740839e-14!GO:0019941;modification-dependent protein catabolic process;3.22692792547815e-14!GO:0043632;modification-dependent macromolecule catabolic process;3.22692792547815e-14!GO:0051082;unfolded protein binding;3.89663733255094e-14!GO:0044257;cellular protein catabolic process;4.26260067134334e-14!GO:0048193;Golgi vesicle transport;5.66119823666883e-14!GO:0006511;ubiquitin-dependent protein catabolic process;6.22852596720717e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.45193803961162e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;9.69832089234222e-14!GO:0006512;ubiquitin cycle;1.05568932576452e-13!GO:0009057;macromolecule catabolic process;1.14174686844211e-13!GO:0030163;protein catabolic process;1.18987450525903e-13!GO:0006732;coenzyme metabolic process;1.35090958035084e-13!GO:0005789;endoplasmic reticulum membrane;2.66307212135602e-13!GO:0006974;response to DNA damage stimulus;3.30918508919304e-13!GO:0042254;ribosome biogenesis and assembly;3.84658565272538e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;4.89324487411725e-13!GO:0000375;RNA splicing, via transesterification reactions;4.89324487411725e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.89324487411725e-13!GO:0044248;cellular catabolic process;5.48050270932037e-13!GO:0032553;ribonucleotide binding;7.48669108375313e-13!GO:0032555;purine ribonucleotide binding;7.48669108375313e-13!GO:0017076;purine nucleotide binding;8.90593518129439e-13!GO:0005793;ER-Golgi intermediate compartment;1.17625591513381e-12!GO:0009055;electron carrier activity;1.78428511309746e-12!GO:0003743;translation initiation factor activity;4.8935252858531e-12!GO:0048523;negative regulation of cellular process;1.27051962781823e-11!GO:0016192;vesicle-mediated transport;1.37929517392358e-11!GO:0006413;translational initiation;1.60205282646384e-11!GO:0009259;ribonucleotide metabolic process;2.03196471013451e-11!GO:0006163;purine nucleotide metabolic process;3.61296561249258e-11!GO:0000087;M phase of mitotic cell cycle;5.20789321582034e-11!GO:0005694;chromosome;6.85196323047832e-11!GO:0005635;nuclear envelope;7.00286375563196e-11!GO:0007067;mitosis;8.24477179972065e-11!GO:0009150;purine ribonucleotide metabolic process;8.62015944562457e-11!GO:0012501;programmed cell death;1.14458075537825e-10!GO:0003712;transcription cofactor activity;1.16316408604437e-10!GO:0006281;DNA repair;1.36087772006706e-10!GO:0000074;regulation of progression through cell cycle;1.39687814088684e-10!GO:0051726;regulation of cell cycle;1.45611436873358e-10!GO:0043412;biopolymer modification;1.88894588906885e-10!GO:0006915;apoptosis;2.16227442197121e-10!GO:0006164;purine nucleotide biosynthetic process;2.35803088599327e-10!GO:0006366;transcription from RNA polymerase II promoter;2.93170751927836e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.74288041984358e-10!GO:0031965;nuclear membrane;3.80476898361517e-10!GO:0005524;ATP binding;4.49609396944186e-10!GO:0009260;ribonucleotide biosynthetic process;5.10089362123828e-10!GO:0009152;purine ribonucleotide biosynthetic process;5.51377069608762e-10!GO:0016604;nuclear body;6.38767341140008e-10!GO:0048519;negative regulation of biological process;8.17617607757981e-10!GO:0016887;ATPase activity;8.35728138400066e-10!GO:0006446;regulation of translational initiation;8.76312405136512e-10!GO:0016491;oxidoreductase activity;9.75675201528268e-10!GO:0022403;cell cycle phase;1.03665633272114e-09!GO:0032559;adenyl ribonucleotide binding;1.24120466320073e-09!GO:0009199;ribonucleoside triphosphate metabolic process;1.26268151428289e-09!GO:0044427;chromosomal part;1.30170831320324e-09!GO:0009719;response to endogenous stimulus;1.33577068122962e-09!GO:0030554;adenyl nucleotide binding;1.86736785454037e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.90209559553341e-09!GO:0009144;purine nucleoside triphosphate metabolic process;1.90209559553341e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.90613521014539e-09!GO:0009141;nucleoside triphosphate metabolic process;1.95754436301392e-09!GO:0006399;tRNA metabolic process;2.0494927037409e-09!GO:0051276;chromosome organization and biogenesis;2.0494927037409e-09!GO:0042623;ATPase activity, coupled;2.31238080011779e-09!GO:0006913;nucleocytoplasmic transport;2.3618794212976e-09!GO:0044453;nuclear membrane part;2.59099061637248e-09!GO:0008219;cell death;2.70793924867078e-09!GO:0016265;death;2.70793924867078e-09!GO:0005788;endoplasmic reticulum lumen;3.00820554064277e-09!GO:0006464;protein modification process;3.39636118000333e-09!GO:0006260;DNA replication;4.26660529611963e-09!GO:0051301;cell division;4.54784944525018e-09!GO:0009060;aerobic respiration;4.65038992341404e-09!GO:0051169;nuclear transport;4.89009457756091e-09!GO:0009142;nucleoside triphosphate biosynthetic process;4.98678009952382e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.98678009952382e-09!GO:0015986;ATP synthesis coupled proton transport;5.31620268653514e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;5.31620268653514e-09!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;7.58044743239931e-09!GO:0009145;purine nucleoside triphosphate biosynthetic process;7.58044743239931e-09!GO:0006888;ER to Golgi vesicle-mediated transport;8.86547392587905e-09!GO:0045333;cellular respiration;1.04807090312691e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.40110782965229e-08!GO:0006364;rRNA processing;1.50596346018214e-08!GO:0006325;establishment and/or maintenance of chromatin architecture;1.62522368377288e-08!GO:0051188;cofactor biosynthetic process;1.8715778660076e-08!GO:0008639;small protein conjugating enzyme activity;2.08252062694716e-08!GO:0030532;small nuclear ribonucleoprotein complex;2.09075241703009e-08!GO:0046034;ATP metabolic process;2.19468363723252e-08!GO:0009056;catabolic process;2.19468363723252e-08!GO:0003924;GTPase activity;2.77426415351611e-08!GO:0016072;rRNA metabolic process;3.38656452799394e-08!GO:0004842;ubiquitin-protein ligase activity;3.7648801400531e-08!GO:0017038;protein import;3.81963933445005e-08!GO:0004386;helicase activity;3.9646326845926e-08!GO:0006323;DNA packaging;4.24122285769701e-08!GO:0016607;nuclear speck;4.25672230400434e-08!GO:0019787;small conjugating protein ligase activity;4.92839234290616e-08!GO:0008565;protein transporter activity;6.5753623293344e-08!GO:0030120;vesicle coat;7.02032693983781e-08!GO:0030662;coated vesicle membrane;7.02032693983781e-08!GO:0008026;ATP-dependent helicase activity;7.34763416526251e-08!GO:0006754;ATP biosynthetic process;7.38434092623842e-08!GO:0006753;nucleoside phosphate metabolic process;7.38434092623842e-08!GO:0050794;regulation of cellular process;8.0196179996822e-08!GO:0019829;cation-transporting ATPase activity;9.35937049468744e-08!GO:0006099;tricarboxylic acid cycle;1.0260142721861e-07!GO:0046356;acetyl-CoA catabolic process;1.0260142721861e-07!GO:0000279;M phase;1.06441551630901e-07!GO:0006461;protein complex assembly;1.28399768075031e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.31834835829195e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.35835541868118e-07!GO:0051246;regulation of protein metabolic process;1.42602067798589e-07!GO:0051187;cofactor catabolic process;1.56995625518122e-07!GO:0044431;Golgi apparatus part;1.59921523284019e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.60504428467118e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.60504428467118e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.60504428467118e-07!GO:0043038;amino acid activation;2.08389691142424e-07!GO:0006418;tRNA aminoacylation for protein translation;2.08389691142424e-07!GO:0043039;tRNA aminoacylation;2.08389691142424e-07!GO:0065002;intracellular protein transport across a membrane;2.44230165169179e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.51606693821099e-07!GO:0065004;protein-DNA complex assembly;2.65073661354536e-07!GO:0016853;isomerase activity;2.81592508935692e-07!GO:0031324;negative regulation of cellular metabolic process;3.12692694705873e-07!GO:0043687;post-translational protein modification;3.59556445176691e-07!GO:0009117;nucleotide metabolic process;3.60640763238184e-07!GO:0043069;negative regulation of programmed cell death;3.93300763594095e-07!GO:0016881;acid-amino acid ligase activity;4.08996604744562e-07!GO:0005768;endosome;4.12199895014563e-07!GO:0009109;coenzyme catabolic process;4.38976290707088e-07!GO:0006084;acetyl-CoA metabolic process;4.43601819328014e-07!GO:0043067;regulation of programmed cell death;5.23693487840776e-07!GO:0006916;anti-apoptosis;5.36072419703014e-07!GO:0015078;hydrogen ion transmembrane transporter activity;6.05676500727196e-07!GO:0005643;nuclear pore;6.0691825978712e-07!GO:0005839;proteasome core complex (sensu Eukaryota);6.56465720502416e-07!GO:0042981;regulation of apoptosis;6.81994245631581e-07!GO:0043066;negative regulation of apoptosis;7.53902912843496e-07!GO:0016787;hydrolase activity;8.2439299691983e-07!GO:0009108;coenzyme biosynthetic process;9.97719059808238e-07!GO:0043566;structure-specific DNA binding;1.0001605998051e-06!GO:0003697;single-stranded DNA binding;1.0001605998051e-06!GO:0016564;transcription repressor activity;1.0001605998051e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.04231219918452e-06!GO:0006752;group transfer coenzyme metabolic process;1.13741153777777e-06!GO:0045259;proton-transporting ATP synthase complex;1.26362304676411e-06!GO:0006333;chromatin assembly or disassembly;1.27113076438945e-06!GO:0000785;chromatin;1.32710299350262e-06!GO:0048475;coated membrane;1.37100955457557e-06!GO:0030117;membrane coat;1.37100955457557e-06!GO:0003714;transcription corepressor activity;1.47182890741468e-06!GO:0015630;microtubule cytoskeleton;1.64109116590639e-06!GO:0045786;negative regulation of progression through cell cycle;1.66951181514413e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.78563563132948e-06!GO:0000245;spliceosome assembly;2.89819949990333e-06!GO:0008654;phospholipid biosynthetic process;3.11462417230287e-06!GO:0006091;generation of precursor metabolites and energy;3.25547083913639e-06!GO:0009892;negative regulation of metabolic process;3.37895933399408e-06!GO:0004298;threonine endopeptidase activity;3.64987314406363e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.66688932378691e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;3.73637812010347e-06!GO:0005667;transcription factor complex;4.15699709525041e-06!GO:0007005;mitochondrion organization and biogenesis;4.33730618106462e-06!GO:0016859;cis-trans isomerase activity;4.57829645945617e-06!GO:0016740;transferase activity;5.13602500864924e-06!GO:0006613;cotranslational protein targeting to membrane;5.14050356786954e-06!GO:0000139;Golgi membrane;5.8941915104157e-06!GO:0006403;RNA localization;5.89463667886683e-06!GO:0046930;pore complex;6.50026295982358e-06!GO:0005762;mitochondrial large ribosomal subunit;6.51968746572383e-06!GO:0000315;organellar large ribosomal subunit;6.51968746572383e-06!GO:0005525;GTP binding;6.89064934614616e-06!GO:0050657;nucleic acid transport;6.95702005853663e-06!GO:0051236;establishment of RNA localization;6.95702005853663e-06!GO:0050658;RNA transport;6.95702005853663e-06!GO:0044440;endosomal part;8.79422774048286e-06!GO:0010008;endosome membrane;8.79422774048286e-06!GO:0051170;nuclear import;9.58928700937129e-06!GO:0016779;nucleotidyltransferase activity;1.04694605771053e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.28785005538393e-05!GO:0005798;Golgi-associated vesicle;1.54599351048151e-05!GO:0032446;protein modification by small protein conjugation;1.61568193061521e-05!GO:0016563;transcription activator activity;1.62463548492537e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.74299872437973e-05!GO:0006334;nucleosome assembly;1.76211817868975e-05!GO:0005770;late endosome;1.98553204821974e-05!GO:0006606;protein import into nucleus;1.99900268506638e-05!GO:0019843;rRNA binding;2.01539896367228e-05!GO:0016567;protein ubiquitination;2.44741351258296e-05!GO:0045454;cell redox homeostasis;2.48314860454025e-05!GO:0016023;cytoplasmic membrane-bound vesicle;2.48472070231614e-05!GO:0031988;membrane-bound vesicle;2.58323662997779e-05!GO:0005813;centrosome;2.75898789837071e-05!GO:0048522;positive regulation of cellular process;2.97025794667268e-05!GO:0015980;energy derivation by oxidation of organic compounds;3.47042095939873e-05!GO:0030867;rough endoplasmic reticulum membrane;3.66620548777977e-05!GO:0031252;leading edge;3.72759689872452e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.26439663330829e-05!GO:0005773;vacuole;4.28457913552745e-05!GO:0016568;chromatin modification;4.37825964684183e-05!GO:0003724;RNA helicase activity;4.55479943724346e-05!GO:0016481;negative regulation of transcription;4.74639167180032e-05!GO:0008361;regulation of cell size;4.79149926307595e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;5.01863011955271e-05!GO:0032561;guanyl ribonucleotide binding;5.03213750309265e-05!GO:0019001;guanyl nucleotide binding;5.03213750309265e-05!GO:0000314;organellar small ribosomal subunit;5.1245389513068e-05!GO:0005763;mitochondrial small ribosomal subunit;5.1245389513068e-05!GO:0006793;phosphorus metabolic process;5.1245389513068e-05!GO:0006796;phosphate metabolic process;5.1245389513068e-05!GO:0016049;cell growth;5.38206582139793e-05!GO:0031497;chromatin assembly;5.54081323078611e-05!GO:0019867;outer membrane;5.75218063299365e-05!GO:0050789;regulation of biological process;5.75218063299365e-05!GO:0043021;ribonucleoprotein binding;6.14193252879949e-05!GO:0031982;vesicle;6.51444677966522e-05!GO:0001558;regulation of cell growth;6.87748637195903e-05!GO:0031410;cytoplasmic vesicle;7.15072865793254e-05!GO:0031968;organelle outer membrane;7.71132649765601e-05!GO:0003713;transcription coactivator activity;7.96164362108227e-05!GO:0006612;protein targeting to membrane;8.34891855360807e-05!GO:0033116;ER-Golgi intermediate compartment membrane;8.34891855360807e-05!GO:0005815;microtubule organizing center;8.40124303958259e-05!GO:0000151;ubiquitin ligase complex;9.11002402261113e-05!GO:0051329;interphase of mitotic cell cycle;0.000101598714286826!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000128762010544655!GO:0016126;sterol biosynthetic process;0.000133966016203399!GO:0030036;actin cytoskeleton organization and biogenesis;0.000144569996129667!GO:0005819;spindle;0.000147181935624279!GO:0051028;mRNA transport;0.000159845636150118!GO:0005769;early endosome;0.000168501617485427!GO:0005048;signal sequence binding;0.00017717911058103!GO:0051789;response to protein stimulus;0.00018339462016732!GO:0006986;response to unfolded protein;0.00018339462016732!GO:0030133;transport vesicle;0.000190934509261497!GO:0006950;response to stress;0.000195799379353694!GO:0051427;hormone receptor binding;0.000199720337918046!GO:0016310;phosphorylation;0.000209877767778366!GO:0043623;cellular protein complex assembly;0.000220599770660777!GO:0004576;oligosaccharyl transferase activity;0.000247362375452403!GO:0003899;DNA-directed RNA polymerase activity;0.000250358923901708!GO:0005905;coated pit;0.000263994266689462!GO:0000323;lytic vacuole;0.000267355035922843!GO:0005764;lysosome;0.000267355035922843!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000273413565664714!GO:0051325;interphase;0.000293657495584074!GO:0008250;oligosaccharyl transferase complex;0.000321519775769795!GO:0007051;spindle organization and biogenesis;0.000353406445040761!GO:0005885;Arp2/3 protein complex;0.000374746059392958!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000391982574324839!GO:0046474;glycerophospholipid biosynthetic process;0.000397101531696519!GO:0035257;nuclear hormone receptor binding;0.000421726100617034!GO:0030663;COPI coated vesicle membrane;0.000427431334874353!GO:0030126;COPI vesicle coat;0.000427431334874353!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000428448986464616!GO:0009165;nucleotide biosynthetic process;0.000445565281787899!GO:0005741;mitochondrial outer membrane;0.000492698760186801!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000591018866516541!GO:0043681;protein import into mitochondrion;0.000649131035508782!GO:0005791;rough endoplasmic reticulum;0.000656717371588599!GO:0006414;translational elongation;0.000656848028263017!GO:0018196;peptidyl-asparagine modification;0.000660873092470792!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000660873092470792!GO:0006261;DNA-dependent DNA replication;0.000674633028066189!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000680317802099313!GO:0007010;cytoskeleton organization and biogenesis;0.000753333408287315!GO:0016363;nuclear matrix;0.000756631736883843!GO:0046467;membrane lipid biosynthetic process;0.000817614886102231!GO:0051920;peroxiredoxin activity;0.000817614886102231!GO:0065009;regulation of a molecular function;0.000817614886102231!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000819123541990628!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000832766430551851!GO:0008610;lipid biosynthetic process;0.000850213853926426!GO:0031072;heat shock protein binding;0.000983419831469367!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00100898797871521!GO:0006626;protein targeting to mitochondrion;0.00104611869155229!GO:0046489;phosphoinositide biosynthetic process;0.00106953848656081!GO:0051252;regulation of RNA metabolic process;0.00108272383423302!GO:0030029;actin filament-based process;0.00110022250863019!GO:0030176;integral to endoplasmic reticulum membrane;0.0011390267949476!GO:0019222;regulation of metabolic process;0.0011743849200721!GO:0030137;COPI-coated vesicle;0.00121927237176362!GO:0000075;cell cycle checkpoint;0.00123698251800645!GO:0006695;cholesterol biosynthetic process;0.00123698251800645!GO:0007050;cell cycle arrest;0.00123698251800645!GO:0007243;protein kinase cascade;0.00127325705608297!GO:0000775;chromosome, pericentric region;0.00129182082269831!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00133717109572177!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00140471078331613!GO:0008186;RNA-dependent ATPase activity;0.00143811591464877!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00146552378555561!GO:0045941;positive regulation of transcription;0.00146552378555561!GO:0006979;response to oxidative stress;0.00152948780650177!GO:0048500;signal recognition particle;0.00155058689300469!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00160829175389281!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00160829175389281!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00160829175389281!GO:0003690;double-stranded DNA binding;0.00165843389596181!GO:0006891;intra-Golgi vesicle-mediated transport;0.00169624449628109!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0017705766979095!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00183097411756381!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00183097411756381!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00186201317543587!GO:0044262;cellular carbohydrate metabolic process;0.00186518728290479!GO:0003729;mRNA binding;0.00192455714563927!GO:0006383;transcription from RNA polymerase III promoter;0.00193053140685029!GO:0045893;positive regulation of transcription, DNA-dependent;0.00196412274329194!GO:0046483;heterocycle metabolic process;0.00204807171169627!GO:0008033;tRNA processing;0.00206865890277783!GO:0043284;biopolymer biosynthetic process;0.00220744589867237!GO:0019899;enzyme binding;0.00225437708217959!GO:0048518;positive regulation of biological process;0.00243930856369163!GO:0016044;membrane organization and biogenesis;0.00249778592964001!GO:0005657;replication fork;0.00251691895290644!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0026216816757317!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0026216816757317!GO:0015992;proton transport;0.00271844995025254!GO:0005684;U2-dependent spliceosome;0.00286858052675669!GO:0044452;nucleolar part;0.00290060841312976!GO:0006818;hydrogen transport;0.00302884784832103!GO:0008094;DNA-dependent ATPase activity;0.00302965513317931!GO:0040008;regulation of growth;0.00310016930031318!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00323967937333798!GO:0008312;7S RNA binding;0.00329208872854784!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00337597573949905!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00338571342943399!GO:0045047;protein targeting to ER;0.00338571342943399!GO:0008180;signalosome;0.00345731831576422!GO:0004004;ATP-dependent RNA helicase activity;0.0035635025466646!GO:0043488;regulation of mRNA stability;0.00390290288620492!GO:0043487;regulation of RNA stability;0.00390290288620492!GO:0045892;negative regulation of transcription, DNA-dependent;0.00394855024309451!GO:0003684;damaged DNA binding;0.00408607679906627!GO:0030658;transport vesicle membrane;0.00415816509877189!GO:0065007;biological regulation;0.00418521474126855!GO:0030132;clathrin coat of coated pit;0.00435905993894643!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00448610357549933!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00462728794392486!GO:0015399;primary active transmembrane transporter activity;0.00462728794392486!GO:0051168;nuclear export;0.00462851589006039!GO:0030880;RNA polymerase complex;0.00471362838043724!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.00471362838043724!GO:0000776;kinetochore;0.00498750315321062!GO:0007006;mitochondrial membrane organization and biogenesis;0.00504712800443964!GO:0042802;identical protein binding;0.00507343242551558!GO:0015631;tubulin binding;0.00557702844169651!GO:0008632;apoptotic program;0.00563415791732919!GO:0030134;ER to Golgi transport vesicle;0.00580665151922818!GO:0030127;COPII vesicle coat;0.00604805371249169!GO:0012507;ER to Golgi transport vesicle membrane;0.00604805371249169!GO:0048471;perinuclear region of cytoplasm;0.00608476519224538!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00617814549317608!GO:0033673;negative regulation of kinase activity;0.00625565686944422!GO:0006469;negative regulation of protein kinase activity;0.00625565686944422!GO:0000082;G1/S transition of mitotic cell cycle;0.00658781252560201!GO:0030027;lamellipodium;0.00659131275764152!GO:0019752;carboxylic acid metabolic process;0.00661685025260673!GO:0003711;transcription elongation regulator activity;0.00675347619244157!GO:0005869;dynactin complex;0.00677765191528828!GO:0030521;androgen receptor signaling pathway;0.00687302846442744!GO:0008139;nuclear localization sequence binding;0.00690947049228435!GO:0017166;vinculin binding;0.0070723339898583!GO:0006082;organic acid metabolic process;0.007073571556341!GO:0006595;polyamine metabolic process;0.00716813498876106!GO:0000339;RNA cap binding;0.00718885978253284!GO:0003678;DNA helicase activity;0.00749881230735528!GO:0016408;C-acyltransferase activity;0.00751355193292555!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00785010829378563!GO:0015002;heme-copper terminal oxidase activity;0.00785010829378563!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00785010829378563!GO:0004129;cytochrome-c oxidase activity;0.00785010829378563!GO:0048487;beta-tubulin binding;0.00794852026980043!GO:0051348;negative regulation of transferase activity;0.00796879824743454!GO:0035258;steroid hormone receptor binding;0.00831034782807374!GO:0030041;actin filament polymerization;0.00854653783892894!GO:0007264;small GTPase mediated signal transduction;0.00859863502096246!GO:0000786;nucleosome;0.00866204003542729!GO:0051087;chaperone binding;0.00869230376555185!GO:0006302;double-strand break repair;0.00869230376555185!GO:0006509;membrane protein ectodomain proteolysis;0.00914728338470984!GO:0033619;membrane protein proteolysis;0.00914728338470984!GO:0007088;regulation of mitosis;0.00915829903359803!GO:0006839;mitochondrial transport;0.00920045331424562!GO:0000059;protein import into nucleus, docking;0.00935640394303042!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00952045477346575!GO:0000428;DNA-directed RNA polymerase complex;0.00952045477346575!GO:0043022;ribosome binding;0.00974611824319067!GO:0003746;translation elongation factor activity;0.00982214797760048!GO:0016272;prefoldin complex;0.00998904414664788!GO:0031901;early endosome membrane;0.010369914312154!GO:0016197;endosome transport;0.010369914312154!GO:0007093;mitotic cell cycle checkpoint;0.010369914312154!GO:0006118;electron transport;0.0105289989146386!GO:0006778;porphyrin metabolic process;0.0105289989146386!GO:0033013;tetrapyrrole metabolic process;0.0105289989146386!GO:0022890;inorganic cation transmembrane transporter activity;0.0105410162006892!GO:0003682;chromatin binding;0.0105818515331798!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0108033982709263!GO:0030660;Golgi-associated vesicle membrane;0.0109294979566588!GO:0030659;cytoplasmic vesicle membrane;0.0109488634815691!GO:0000049;tRNA binding;0.0112127292273412!GO:0006650;glycerophospholipid metabolic process;0.0114558421236791!GO:0006506;GPI anchor biosynthetic process;0.0115819208157653!GO:0003756;protein disulfide isomerase activity;0.0117080537508603!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0117080537508603!GO:0051052;regulation of DNA metabolic process;0.0118959363198061!GO:0008092;cytoskeletal protein binding;0.0118959363198061!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0120149457399962!GO:0005832;chaperonin-containing T-complex;0.0120490934556017!GO:0048144;fibroblast proliferation;0.0120930600459817!GO:0048145;regulation of fibroblast proliferation;0.0120930600459817!GO:0005862;muscle thin filament tropomyosin;0.0121465680050091!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0121924795971748!GO:0008047;enzyme activator activity;0.0124071054318869!GO:0006289;nucleotide-excision repair;0.0125131578013992!GO:0001527;microfibril;0.0126055909823184!GO:0006497;protein amino acid lipidation;0.0128386991156588!GO:0006402;mRNA catabolic process;0.0129022624943657!GO:0043433;negative regulation of transcription factor activity;0.0129280871537434!GO:0008243;plasminogen activator activity;0.0129640802076616!GO:0006352;transcription initiation;0.013127086836653!GO:0016251;general RNA polymerase II transcription factor activity;0.0132729808475851!GO:0009112;nucleobase metabolic process;0.0134175509778439!GO:0006505;GPI anchor metabolic process;0.0138193880140873!GO:0030833;regulation of actin filament polymerization;0.0139153077415083!GO:0009116;nucleoside metabolic process;0.0139153077415083!GO:0006740;NADPH regeneration;0.0140388880867621!GO:0006098;pentose-phosphate shunt;0.0140388880867621!GO:0051540;metal cluster binding;0.0140532314980868!GO:0051536;iron-sulfur cluster binding;0.0140532314980868!GO:0050662;coenzyme binding;0.0141753596289677!GO:0030118;clathrin coat;0.0144042154745686!GO:0050790;regulation of catalytic activity;0.0144111146711362!GO:0007052;mitotic spindle organization and biogenesis;0.0148351067959996!GO:0045792;negative regulation of cell size;0.0150780467621081!GO:0051287;NAD binding;0.0150780467621081!GO:0048146;positive regulation of fibroblast proliferation;0.0155850127695258!GO:0016741;transferase activity, transferring one-carbon groups;0.0157329324158152!GO:0030308;negative regulation of cell growth;0.0158650300601921!GO:0051128;regulation of cellular component organization and biogenesis;0.0159930946903688!GO:0007040;lysosome organization and biogenesis;0.0162866311738151!GO:0030384;phosphoinositide metabolic process;0.0166325253167222!GO:0031124;mRNA 3'-end processing;0.0166325253167222!GO:0031529;ruffle organization and biogenesis;0.0167239641866134!GO:0016860;intramolecular oxidoreductase activity;0.0168558035556536!GO:0050681;androgen receptor binding;0.0169774444067583!GO:0030145;manganese ion binding;0.0169808294152809!GO:0008168;methyltransferase activity;0.0170552616704116!GO:0008154;actin polymerization and/or depolymerization;0.0170552616704116!GO:0042168;heme metabolic process;0.017253317406152!GO:0045045;secretory pathway;0.017463394931861!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0175112741128621!GO:0051539;4 iron, 4 sulfur cluster binding;0.0175404225168401!GO:0030518;steroid hormone receptor signaling pathway;0.0175660607008965!GO:0031418;L-ascorbic acid binding;0.0176419682207586!GO:0005637;nuclear inner membrane;0.0185223799644754!GO:0051101;regulation of DNA binding;0.01864447013174!GO:0004177;aminopeptidase activity;0.0187918575316901!GO:0006417;regulation of translation;0.0188195506751123!GO:0005586;collagen type III;0.0188642969915327!GO:0046519;sphingoid metabolic process;0.0189410577622143!GO:0000096;sulfur amino acid metabolic process;0.0189410577622143!GO:0005758;mitochondrial intermembrane space;0.0189448118322242!GO:0048468;cell development;0.0198284991740367!GO:0044433;cytoplasmic vesicle part;0.0202586552635309!GO:0009967;positive regulation of signal transduction;0.021058318252081!GO:0006401;RNA catabolic process;0.0211016536455771!GO:0015036;disulfide oxidoreductase activity;0.0211016536455771!GO:0005874;microtubule;0.0216957008538552!GO:0045936;negative regulation of phosphate metabolic process;0.0216957008538552!GO:0006354;RNA elongation;0.022477404939876!GO:0043086;negative regulation of catalytic activity;0.0226502997026662!GO:0006693;prostaglandin metabolic process;0.0227406375608836!GO:0006692;prostanoid metabolic process;0.0227406375608836!GO:0022408;negative regulation of cell-cell adhesion;0.0237221903870261!GO:0003702;RNA polymerase II transcription factor activity;0.0237293052494354!GO:0043492;ATPase activity, coupled to movement of substances;0.0237293052494354!GO:0007034;vacuolar transport;0.0238432234641433!GO:0030433;ER-associated protein catabolic process;0.0242170396313989!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0242170396313989!GO:0006275;regulation of DNA replication;0.0242257602417026!GO:0000209;protein polyubiquitination;0.0246805677353453!GO:0008022;protein C-terminus binding;0.024941835444678!GO:0030125;clathrin vesicle coat;0.0251370912513807!GO:0030665;clathrin coated vesicle membrane;0.0251370912513807!GO:0006007;glucose catabolic process;0.0252395000290371!GO:0008147;structural constituent of bone;0.0252519545709946!GO:0004527;exonuclease activity;0.0254211186056147!GO:0004003;ATP-dependent DNA helicase activity;0.0258918265939905!GO:0047485;protein N-terminus binding;0.0259884237420059!GO:0007021;tubulin folding;0.02604563162983!GO:0031970;organelle envelope lumen;0.0265839613140277!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0273182555645802!GO:0031902;late endosome membrane;0.027603016375665!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0277644055313353!GO:0001726;ruffle;0.0284500054188954!GO:0006643;membrane lipid metabolic process;0.0292085604864628!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0292387883413317!GO:0031625;ubiquitin protein ligase binding;0.0300938554305158!GO:0030508;thiol-disulfide exchange intermediate activity;0.0304074711518238!GO:0032984;macromolecular complex disassembly;0.0305237846236464!GO:0005801;cis-Golgi network;0.0308452896001148!GO:0031371;ubiquitin conjugating enzyme complex;0.030870135547302!GO:0006779;porphyrin biosynthetic process;0.032570168614629!GO:0033014;tetrapyrrole biosynthetic process;0.032570168614629!GO:0005669;transcription factor TFIID complex;0.032605954038689!GO:0006376;mRNA splice site selection;0.0328644664984957!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0328644664984957!GO:0006144;purine base metabolic process;0.0330214261126858!GO:0004448;isocitrate dehydrogenase activity;0.0335167237407209!GO:0006672;ceramide metabolic process;0.0335454383742802!GO:0007033;vacuole organization and biogenesis;0.0337346560902484!GO:0042158;lipoprotein biosynthetic process;0.0338498821065038!GO:0006520;amino acid metabolic process;0.0342615443370591!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0342615443370591!GO:0006378;mRNA polyadenylation;0.0344590155496575!GO:0005138;interleukin-6 receptor binding;0.0347734177876886!GO:0031301;integral to organelle membrane;0.0349958249247357!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0349958249247357!GO:0012506;vesicle membrane;0.0351338796317351!GO:0032508;DNA duplex unwinding;0.0351602578325166!GO:0032392;DNA geometric change;0.0351602578325166!GO:0009225;nucleotide-sugar metabolic process;0.0352440803272183!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.035252140936047!GO:0006611;protein export from nucleus;0.035252140936047!GO:0019798;procollagen-proline dioxygenase activity;0.0353249668121404!GO:0009889;regulation of biosynthetic process;0.0364646877579652!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0366524773407462!GO:0008538;proteasome activator activity;0.0366682816180669!GO:0007030;Golgi organization and biogenesis;0.0367037696666797!GO:0009119;ribonucleoside metabolic process;0.0370976760610142!GO:0050811;GABA receptor binding;0.0370976760610142!GO:0030149;sphingolipid catabolic process;0.0374920025362506!GO:0006310;DNA recombination;0.0376484833903389!GO:0005581;collagen;0.0381463066071506!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0381499777194627!GO:0051059;NF-kappaB binding;0.038241919641724!GO:0006749;glutathione metabolic process;0.0382635588152333!GO:0005784;translocon complex;0.0391438006898109!GO:0008283;cell proliferation;0.039362392409198!GO:0008637;apoptotic mitochondrial changes;0.0396030337195196!GO:0030911;TPR domain binding;0.0397512179184211!GO:0031323;regulation of cellular metabolic process;0.0397942829576282!GO:0016407;acetyltransferase activity;0.0402589890594313!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0402589890594313!GO:0006220;pyrimidine nucleotide metabolic process;0.0403804283582832!GO:0031543;peptidyl-proline dioxygenase activity;0.0406100425587575!GO:0031326;regulation of cellular biosynthetic process;0.0407951658420278!GO:0006790;sulfur metabolic process;0.0408952148415383!GO:0043065;positive regulation of apoptosis;0.0409789758289765!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0417487280747487!GO:0004518;nuclease activity;0.0422526553284976!GO:0043068;positive regulation of programmed cell death;0.0423468008985688!GO:0009303;rRNA transcription;0.0429013128972261!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0429143507612084!GO:0001953;negative regulation of cell-matrix adhesion;0.0430038820220367!GO:0046128;purine ribonucleoside metabolic process;0.0430038820220367!GO:0042278;purine nucleoside metabolic process;0.0430038820220367!GO:0000030;mannosyltransferase activity;0.043054829353347!GO:0004228;gelatinase A activity;0.0431458668991906!GO:0001955;blood vessel maturation;0.0431458668991906!GO:0047115;trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity;0.0433614312408429!GO:0022415;viral reproductive process;0.0434321241307354!GO:0051271;negative regulation of cell motility;0.0434682730553146!GO:0006720;isoprenoid metabolic process;0.0435444886043202!GO:0005092;GDP-dissociation inhibitor activity;0.0444562165084556!GO:0000910;cytokinesis;0.044609830693918!GO:0000792;heterochromatin;0.0451361316046793!GO:0000178;exosome (RNase complex);0.0452211922362105!GO:0004287;prolyl oligopeptidase activity;0.0459481675829646!GO:0032940;secretion by cell;0.0470271966339916!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0470271966339916!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0476420139102299!GO:0042326;negative regulation of phosphorylation;0.0476521650280527!GO:0006739;NADP metabolic process;0.0478191892096153!GO:0008299;isoprenoid biosynthetic process;0.0483414843349686!GO:0043241;protein complex disassembly;0.0483414843349686!GO:0035035;histone acetyltransferase binding;0.0488569419592868!GO:0006892;post-Golgi vesicle-mediated transport;0.0493014098323993!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0494909529040262!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.049500549529567!GO:0003988;acetyl-CoA C-acyltransferase activity;0.049500549529567!GO:0033559;unsaturated fatty acid metabolic process;0.049500549529567!GO:0006636;unsaturated fatty acid biosynthetic process;0.049500549529567!GO:0022406;membrane docking;0.0496354991303197!GO:0048278;vesicle docking;0.0496354991303197 | |||
|sample_id=11754 | |sample_id=11754 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=heart | |sample_tissue=heart | ||
|top_motifs=ALX4:2.46212624135;NKX3-1:1.59553030655;HOX{A5,B5}:1.41586456434;HSF1,2:1.39839250534;ZNF238:1.26744761369;TAL1_TCF{3,4,12}:1.23018667415;IKZF1:1.21232636368;PAX1,9:1.14875043714;NFATC1..3:1.04239649373;FOX{I1,J2}:1.0365967427;HES1:1.02440241029;ALX1:1.02151530055;EBF1:1.01862660527;ZNF384:0.987594186356;EN1,2:0.962559277808;PAX8:0.959375956407;GZF1:0.940385428272;UFEwm:0.917342917746;MYBL2:0.879377812948;HOX{A4,D4}:0.867334170506;EVI1:0.803520095111;MAFB:0.783180308927;TLX1..3_NFIC{dimer}:0.761781199369;HMX1:0.753205060893;TEAD1:0.721095179535;AR:0.700123605016;GATA4:0.691232982124;NANOG{mouse}:0.67306423223;GLI1..3:0.66355138598;ESR1:0.648589422819;NR3C1:0.62527260473;PBX1:0.623991062795;ATF6:0.594875312347;RXRA_VDR{dimer}:0.567506113806;KLF4:0.5490547287;BACH2:0.543492632254;GFI1B:0.543107005841;SRF:0.53623980309;PRDM1:0.529901770353;TBX4,5:0.529804086992;NFIX:0.524295327463;ELK1,4_GABP{A,B1}:0.523255081995;FOS_FOS{B,L1}_JUN{B,D}:0.521844483226;GTF2I:0.501391275475;LHX3,4:0.49767535108;ZNF423:0.497409559279;FOXL1:0.492904595852;XBP1:0.487402246299;NFE2L2:0.478258664351;XCPE1{core}:0.477991737013;CRX:0.47417033643;GTF2A1,2:0.463748739604;TFCP2:0.449058704028;YY1:0.449030548102;GFI1:0.409460171039;HAND1,2:0.407879633696;HMGA1,2:0.401290804633;CDC5L:0.393468612891;DBP:0.368133656404;PAX4:0.364684028161;HLF:0.36118928117;AIRE:0.360203051008;SOX17:0.346597903093;ZIC1..3:0.328886435871;PATZ1:0.326804004747;TBP:0.322308100294;MZF1:0.306050419326;TP53:0.27715095449;CREB1:0.273959139138;RFX1:0.266785230844;bHLH_family:0.263857903901;AHR_ARNT_ARNT2:0.26236954229;FOXQ1:0.256131371988;RXR{A,B,G}:0.248587647165;JUN:0.226906835679;FOXM1:0.224742989078;SOX2:0.219433324678;FOSL2:0.21596696829;TLX2:0.203764496219;ZBTB6:0.193343484236;SMAD1..7,9:0.190279045889;NKX2-2,8:0.181711757204;POU3F1..4:0.174743365931;ARID5B:0.174373282099;TEF:0.149671597044;MAZ:0.139742230599;ZNF143:0.132937573916;POU1F1:0.129893464025;STAT2,4,6:0.125173233499;PAX2:0.115927151067;TFDP1:0.10830647498;ATF5_CREB3:0.101148619506;GCM1,2:0.0778850992126;TFAP2B:0.0723442921585;RUNX1..3:0.0706025583117;ATF2:0.0658485422223;NFE2:0.0626279990959;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0518988112165;PDX1:0.0473042115803;HIF1A:0.0347356554379;ZBTB16:0.0326410702348;NHLH1,2:0.0313107334118;MYB:0.017196193787;PRRX1,2:0.0168202598578;NRF1:0.00528875438668;STAT1,3:0.00432270302229;HNF1A:-0.000428812447392;ELF1,2,4:-0.000530964779895;SPZ1:-0.00118166254097;FOXP3:-0.0019504019929;NFIL3:-0.00354272009593;CDX1,2,4:-0.0189268422192;MTE{core}:-0.0273792230674;E2F1..5:-0.0297458915128;HBP1_HMGB_SSRP1_UBTF:-0.0450432359602;NFKB1_REL_RELA:-0.0451430804512;ZNF148:-0.046691408057;HIC1:-0.0482745113885;TFAP4:-0.0743723975316;NR1H4:-0.0770197118266;ESRRA:-0.0829615426092;PPARG:-0.0945155697943;NKX2-1,4:-0.0951354670555;NR6A1:-0.0979011375488;POU6F1:-0.101653337184;FOXD3:-0.105339844266;CEBPA,B_DDIT3:-0.108924434021;POU5F1:-0.136763063191;EGR1..3:-0.139526848854;SOX{8,9,10}:-0.153061123281;NFY{A,B,C}:-0.154978104825;RREB1:-0.156430251735;MYFfamily:-0.15900221498;NKX6-1,2:-0.161097997033;SOX5:-0.186128915349;NFE2L1:-0.186576700604;RBPJ:-0.19872321345;REST:-0.200349515467;EP300:-0.22370574752;MED-1{core}:-0.224363843747;NKX3-2:-0.224864655795;HOXA9_MEIS1:-0.230182357712;IRF1,2:-0.240833712542;BPTF:-0.253350677019;NR5A1,2:-0.26150290659;PAX5:-0.272679151206;MEF2{A,B,C,D}:-0.279162801878;LEF1_TCF7_TCF7L1,2:-0.297806770887;ZFP161:-0.310599628544;MTF1:-0.311748604453;TFAP2{A,C}:-0.31952108021;HOX{A6,A7,B6,B7}:-0.329648612206;PAX3,7:-0.33211505854;POU2F1..3:-0.345829638479;HNF4A_NR2F1,2:-0.363161581048;TOPORS:-0.373863200671;GATA6:-0.394234125037;FOXN1:-0.407060978037;ONECUT1,2:-0.425480666866;SPI1:-0.433602960915;ETS1,2:-0.435639443081;IRF7:-0.47759668375;SPIB:-0.500266761444;SREBF1,2:-0.500550991762;FOX{D1,D2}:-0.534296602069;ATF4:-0.550581479118;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.561601586788;FOXO1,3,4:-0.575836634877;FOXP1:-0.583726764086;TGIF1:-0.583782017599;IKZF2:-0.598659367913;DMAP1_NCOR{1,2}_SMARC:-0.604668504557;PAX6:-0.607743238247;SP1:-0.638645231288;NANOG:-0.642923878692;VSX1,2:-0.662705604403;BREu{core}:-0.697022095093;CUX2:-0.713188192759;STAT5{A,B}:-0.717929764181;OCT4_SOX2{dimer}:-0.791448791264;RFX2..5_RFXANK_RFXAP:-0.816514874911;LMO2:-0.845751274711;SNAI1..3:-0.899911926854;ADNP_IRX_SIX_ZHX:-0.904218099226;T:-0.913849398417;RORA:-0.931484801153;FOXA2:-1.00091422817;ZEB1:-1.01020348061;NKX2-3_NKX2-5:-1.12391255587;FOX{F1,F2,J1}:-1.40670130571;PITX1..3:-1.49531729777;MYOD1:-1.74087620913 | |top_motifs=ALX4:2.46212624135;NKX3-1:1.59553030655;HOX{A5,B5}:1.41586456434;HSF1,2:1.39839250534;ZNF238:1.26744761369;TAL1_TCF{3,4,12}:1.23018667415;IKZF1:1.21232636368;PAX1,9:1.14875043714;NFATC1..3:1.04239649373;FOX{I1,J2}:1.0365967427;HES1:1.02440241029;ALX1:1.02151530055;EBF1:1.01862660527;ZNF384:0.987594186356;EN1,2:0.962559277808;PAX8:0.959375956407;GZF1:0.940385428272;UFEwm:0.917342917746;MYBL2:0.879377812948;HOX{A4,D4}:0.867334170506;EVI1:0.803520095111;MAFB:0.783180308927;TLX1..3_NFIC{dimer}:0.761781199369;HMX1:0.753205060893;TEAD1:0.721095179535;AR:0.700123605016;GATA4:0.691232982124;NANOG{mouse}:0.67306423223;GLI1..3:0.66355138598;ESR1:0.648589422819;NR3C1:0.62527260473;PBX1:0.623991062795;ATF6:0.594875312347;RXRA_VDR{dimer}:0.567506113806;KLF4:0.5490547287;BACH2:0.543492632254;GFI1B:0.543107005841;SRF:0.53623980309;PRDM1:0.529901770353;TBX4,5:0.529804086992;NFIX:0.524295327463;ELK1,4_GABP{A,B1}:0.523255081995;FOS_FOS{B,L1}_JUN{B,D}:0.521844483226;GTF2I:0.501391275475;LHX3,4:0.49767535108;ZNF423:0.497409559279;FOXL1:0.492904595852;XBP1:0.487402246299;NFE2L2:0.478258664351;XCPE1{core}:0.477991737013;CRX:0.47417033643;GTF2A1,2:0.463748739604;TFCP2:0.449058704028;YY1:0.449030548102;GFI1:0.409460171039;HAND1,2:0.407879633696;HMGA1,2:0.401290804633;CDC5L:0.393468612891;DBP:0.368133656404;PAX4:0.364684028161;HLF:0.36118928117;AIRE:0.360203051008;SOX17:0.346597903093;ZIC1..3:0.328886435871;PATZ1:0.326804004747;TBP:0.322308100294;MZF1:0.306050419326;TP53:0.27715095449;CREB1:0.273959139138;RFX1:0.266785230844;bHLH_family:0.263857903901;AHR_ARNT_ARNT2:0.26236954229;FOXQ1:0.256131371988;RXR{A,B,G}:0.248587647165;JUN:0.226906835679;FOXM1:0.224742989078;SOX2:0.219433324678;FOSL2:0.21596696829;TLX2:0.203764496219;ZBTB6:0.193343484236;SMAD1..7,9:0.190279045889;NKX2-2,8:0.181711757204;POU3F1..4:0.174743365931;ARID5B:0.174373282099;TEF:0.149671597044;MAZ:0.139742230599;ZNF143:0.132937573916;POU1F1:0.129893464025;STAT2,4,6:0.125173233499;PAX2:0.115927151067;TFDP1:0.10830647498;ATF5_CREB3:0.101148619506;GCM1,2:0.0778850992126;TFAP2B:0.0723442921585;RUNX1..3:0.0706025583117;ATF2:0.0658485422223;NFE2:0.0626279990959;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0518988112165;PDX1:0.0473042115803;HIF1A:0.0347356554379;ZBTB16:0.0326410702348;NHLH1,2:0.0313107334118;MYB:0.017196193787;PRRX1,2:0.0168202598578;NRF1:0.00528875438668;STAT1,3:0.00432270302229;HNF1A:-0.000428812447392;ELF1,2,4:-0.000530964779895;SPZ1:-0.00118166254097;FOXP3:-0.0019504019929;NFIL3:-0.00354272009593;CDX1,2,4:-0.0189268422192;MTE{core}:-0.0273792230674;E2F1..5:-0.0297458915128;HBP1_HMGB_SSRP1_UBTF:-0.0450432359602;NFKB1_REL_RELA:-0.0451430804512;ZNF148:-0.046691408057;HIC1:-0.0482745113885;TFAP4:-0.0743723975316;NR1H4:-0.0770197118266;ESRRA:-0.0829615426092;PPARG:-0.0945155697943;NKX2-1,4:-0.0951354670555;NR6A1:-0.0979011375488;POU6F1:-0.101653337184;FOXD3:-0.105339844266;CEBPA,B_DDIT3:-0.108924434021;POU5F1:-0.136763063191;EGR1..3:-0.139526848854;SOX{8,9,10}:-0.153061123281;NFY{A,B,C}:-0.154978104825;RREB1:-0.156430251735;MYFfamily:-0.15900221498;NKX6-1,2:-0.161097997033;SOX5:-0.186128915349;NFE2L1:-0.186576700604;RBPJ:-0.19872321345;REST:-0.200349515467;EP300:-0.22370574752;MED-1{core}:-0.224363843747;NKX3-2:-0.224864655795;HOXA9_MEIS1:-0.230182357712;IRF1,2:-0.240833712542;BPTF:-0.253350677019;NR5A1,2:-0.26150290659;PAX5:-0.272679151206;MEF2{A,B,C,D}:-0.279162801878;LEF1_TCF7_TCF7L1,2:-0.297806770887;ZFP161:-0.310599628544;MTF1:-0.311748604453;TFAP2{A,C}:-0.31952108021;HOX{A6,A7,B6,B7}:-0.329648612206;PAX3,7:-0.33211505854;POU2F1..3:-0.345829638479;HNF4A_NR2F1,2:-0.363161581048;TOPORS:-0.373863200671;GATA6:-0.394234125037;FOXN1:-0.407060978037;ONECUT1,2:-0.425480666866;SPI1:-0.433602960915;ETS1,2:-0.435639443081;IRF7:-0.47759668375;SPIB:-0.500266761444;SREBF1,2:-0.500550991762;FOX{D1,D2}:-0.534296602069;ATF4:-0.550581479118;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.561601586788;FOXO1,3,4:-0.575836634877;FOXP1:-0.583726764086;TGIF1:-0.583782017599;IKZF2:-0.598659367913;DMAP1_NCOR{1,2}_SMARC:-0.604668504557;PAX6:-0.607743238247;SP1:-0.638645231288;NANOG:-0.642923878692;VSX1,2:-0.662705604403;BREu{core}:-0.697022095093;CUX2:-0.713188192759;STAT5{A,B}:-0.717929764181;OCT4_SOX2{dimer}:-0.791448791264;RFX2..5_RFXANK_RFXAP:-0.816514874911;LMO2:-0.845751274711;SNAI1..3:-0.899911926854;ADNP_IRX_SIX_ZHX:-0.904218099226;T:-0.913849398417;RORA:-0.931484801153;FOXA2:-1.00091422817;ZEB1:-1.01020348061;NKX2-3_NKX2-5:-1.12391255587;FOX{F1,F2,J1}:-1.40670130571;PITX1..3:-1.49531729777;MYOD1:-1.74087620913 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11754-123G8;search_select_hide=table117:FF:11754-123G8 | |||
}} | }} | ||
Latest revision as of 18:17, 4 June 2020
| Name: | mesenchymal precursor cell - cardiac, donor3 |
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| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12370 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12370
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12370
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.958 |
| 10 | 10 | 0.364 |
| 100 | 100 | 0.285 |
| 101 | 101 | 0.314 |
| 102 | 102 | 0.216 |
| 103 | 103 | 0.377 |
| 104 | 104 | 0.654 |
| 105 | 105 | 0.0468 |
| 106 | 106 | 0.891 |
| 107 | 107 | 0.704 |
| 108 | 108 | 0.662 |
| 109 | 109 | 0.807 |
| 11 | 11 | 0.602 |
| 110 | 110 | 0.0591 |
| 111 | 111 | 0.0998 |
| 112 | 112 | 0.77 |
| 113 | 113 | 0.00349 |
| 114 | 114 | 0.884 |
| 115 | 115 | 0.224 |
| 116 | 116 | 0.0277 |
| 117 | 117 | 0.37 |
| 118 | 118 | 0.309 |
| 119 | 119 | 0.596 |
| 12 | 12 | 0.388 |
| 120 | 120 | 0.245 |
| 121 | 121 | 0.812 |
| 122 | 122 | 0.014 |
| 123 | 123 | 1.01839e-4 |
| 124 | 124 | 0.153 |
| 125 | 125 | 0.87 |
| 126 | 126 | 0.996 |
| 127 | 127 | 0.628 |
| 128 | 128 | 0.953 |
| 129 | 129 | 0.91 |
| 13 | 13 | 0.927 |
| 130 | 130 | 0.236 |
| 131 | 131 | 0.348 |
| 132 | 132 | 0.696 |
| 133 | 133 | 0.864 |
| 134 | 134 | 0.419 |
| 135 | 135 | 0.214 |
| 136 | 136 | 0.693 |
| 137 | 137 | 0.59 |
| 138 | 138 | 0.733 |
| 139 | 139 | 0.573 |
| 14 | 14 | 0.195 |
| 140 | 140 | 0.24 |
| 141 | 141 | 0.581 |
| 142 | 142 | 0.376 |
| 143 | 143 | 0.458 |
| 144 | 144 | 0.49 |
| 145 | 145 | 0.994 |
| 146 | 146 | 0.92 |
| 147 | 147 | 0.16 |
| 148 | 148 | 0.663 |
| 149 | 149 | 0.346 |
| 15 | 15 | 0.802 |
| 150 | 150 | 0.104 |
| 151 | 151 | 0.411 |
| 152 | 152 | 0.349 |
| 153 | 153 | 0.998 |
| 154 | 154 | 0.459 |
| 155 | 155 | 0.00844 |
| 156 | 156 | 0.307 |
| 157 | 157 | 0.597 |
| 158 | 158 | 0.005 |
| 159 | 159 | 0.138 |
| 16 | 16 | 0.0672 |
| 160 | 160 | 0.936 |
| 161 | 161 | 0.393 |
| 162 | 162 | 0.994 |
| 163 | 163 | 0.75 |
| 164 | 164 | 0.368 |
| 165 | 165 | 0.189 |
| 166 | 166 | 0.249 |
| 167 | 167 | 0.83 |
| 168 | 168 | 0.751 |
| 169 | 169 | 0.093 |
| 17 | 17 | 0.922 |
| 18 | 18 | 0.249 |
| 19 | 19 | 0.0526 |
| 2 | 2 | 0.481 |
| 20 | 20 | 0.459 |
| 21 | 21 | 0.432 |
| 22 | 22 | 0.489 |
| 23 | 23 | 0.412 |
| 24 | 24 | 0.616 |
| 25 | 25 | 0.176 |
| 26 | 26 | 0.334 |
| 27 | 27 | 0.945 |
| 28 | 28 | 0.339 |
| 29 | 29 | 0.443 |
| 3 | 3 | 0.658 |
| 30 | 30 | 0.449 |
| 31 | 31 | 0.988 |
| 32 | 32 | 2.05675e-10 |
| 33 | 33 | 0.752 |
| 34 | 34 | 0.442 |
| 35 | 35 | 0.864 |
| 36 | 36 | 0.0982 |
| 37 | 37 | 0.243 |
| 38 | 38 | 0.524 |
| 39 | 39 | 0.125 |
| 4 | 4 | 0.209 |
| 40 | 40 | 0.12 |
| 41 | 41 | 0.572 |
| 42 | 42 | 0.843 |
| 43 | 43 | 0.824 |
| 44 | 44 | 0.458 |
| 45 | 45 | 0.745 |
| 46 | 46 | 0.712 |
| 47 | 47 | 0.606 |
| 48 | 48 | 0.832 |
| 49 | 49 | 0.073 |
| 5 | 5 | 0.888 |
| 50 | 50 | 0.481 |
| 51 | 51 | 0.969 |
| 52 | 52 | 0.489 |
| 53 | 53 | 0.0161 |
| 54 | 54 | 0.891 |
| 55 | 55 | 0.447 |
| 56 | 56 | 0.412 |
| 57 | 57 | 0.489 |
| 58 | 58 | 0.2 |
| 59 | 59 | 0.348 |
| 6 | 6 | 0.199 |
| 60 | 60 | 0.721 |
| 61 | 61 | 0.837 |
| 62 | 62 | 0.822 |
| 63 | 63 | 0.914 |
| 64 | 64 | 0.679 |
| 65 | 65 | 0.539 |
| 66 | 66 | 0.515 |
| 67 | 67 | 0.488 |
| 68 | 68 | 0.869 |
| 69 | 69 | 0.259 |
| 7 | 7 | 0.404 |
| 70 | 70 | 0.371 |
| 71 | 71 | 0.469 |
| 72 | 72 | 0.542 |
| 73 | 73 | 0.076 |
| 74 | 74 | 0.0926 |
| 75 | 75 | 0.671 |
| 76 | 76 | 0.716 |
| 77 | 77 | 0.012 |
| 78 | 78 | 0.0455 |
| 79 | 79 | 0.0115 |
| 8 | 8 | 0.35 |
| 80 | 80 | 0.988 |
| 81 | 81 | 0.962 |
| 82 | 82 | 0.567 |
| 83 | 83 | 0.943 |
| 84 | 84 | 0.725 |
| 85 | 85 | 0.793 |
| 86 | 86 | 0.168 |
| 87 | 87 | 0.0574 |
| 88 | 88 | 0.428 |
| 89 | 89 | 0.111 |
| 9 | 9 | 0.524 |
| 90 | 90 | 0.651 |
| 91 | 91 | 0.824 |
| 92 | 92 | 0.509 |
| 93 | 93 | 0.841 |
| 94 | 94 | 0.442 |
| 95 | 95 | 0.323 |
| 96 | 96 | 0.938 |
| 97 | 97 | 0.297 |
| 98 | 98 | 0.0522 |
| 99 | 99 | 0.0669 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12370
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000271 human cardiac mesenchymal precursor cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0002494 (cardiocyte)
0000034 (stem cell)
0000569 (cardiac mesenchymal cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0007100 (primary circulatory organ)
0000948 (heart)
0002384 (connective tissue)
0000479 (tissue)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0010317 (germ layer / neural crest derived structure)
0004535 (cardiovascular system)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000271 (human cardiac mesenchymal precursor cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000134 (mesenchymal cell)
CL:0000011 (migratory trunk neural crest cell)
CL:0000221 (ectodermal cell)
