FF:12131-128D7: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005398 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008082;DRR008954;DRZ000379;DRZ001764;DRZ011729;DRZ013114 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002371,UBERON:0001474,UBERON:0000479,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004765,UBERON:0010317,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002032,CL:0000763,CL:0002371,CL:0000255,CL:0000557 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000070 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/granulocyte%2520macrophage%2520progenitor%252c%2520donor1.CNhs12519.12131-128D7.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/granulocyte%2520macrophage%2520progenitor%252c%2520donor1.CNhs12519.12131-128D7.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/granulocyte%2520macrophage%2520progenitor%252c%2520donor1.CNhs12519.12131-128D7.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/granulocyte%2520macrophage%2520progenitor%252c%2520donor1.CNhs12519.12131-128D7.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/granulocyte%2520macrophage%2520progenitor%252c%2520donor1.CNhs12519.12131-128D7.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:12131-128D7 | |id=FF:12131-128D7 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000070;;FF:0000210 | ||
|is_obsolete= | |||
|library_id=CNhs12519 | |||
|library_id_phase_based=2:CNhs12519 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12131 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12131 | |||
|name=granulocyte macrophage progenitor, donor1 | |name=granulocyte macrophage progenitor, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12519,LSID919,release012,COMPLETED | |profile_hcage=CNhs12519,LSID919,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0,-0.277362132193514,-0.282403560576942,0,0,0,0,0,0,0,0,0,0.357451879411068,0,0,0,-0.153323010348428,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.145899716966013,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0.00209348206920185,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0.357451879411068,0,0,0.550831268649987,0,0,0,0,0,0,0,0,0,0.081698946418811,-0.0462633827722896,0,0,0,0.585883094175908,-0.211197402695869,0,0,0.468879153226557,0,-0.0980353512377064,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,-0.167716906896504,-0.34454841572037,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0,0,0,0,0,0,0,0,0,-0.247178875285564,0,0.463672087701107,-0.143515142523472,0,0,-0.248553147204036,0,0,0,0,0,0,0,0,0,-0.128119866952565,0,-0.0504125515893149,0,0,0,0,-0.0186252810838506,-0.305472230898407,0,-0.17425806114951,-0.0683442610773682,0,0,0,0,0.00517496499066902,0,-0.120879483793741,0.274731711087651,0,-0.197840448366163,0.310647220518688,0,0,0,-0.496300899382759,0.719239598230582,0,0,0.347099301474683,0.252894113829696,0,0,-0.391044581551635,0,-0.543920204206659,-0.248868050382253,0,-0.36577122580328,0,0,0,0,0,0,0,0,0,0,0,-0.0574934668214365,0.0304632827320994,-0.0304099808375785,0,0,-0.0739148182245154,0.109812819741359,0,0,-0.373286155956567,-0.0082299061547797,0.33567226559243,0.17261729366999,0,0.248441541640074,0.34662788461992,0.457547439185024,0.585883094175908,-0.147401849371139,-0.189981719549847,0,-0.0462633827722896,0.616364435830865,0.386037608641592,-0.158635820603155,0.342180373927545,-0.873956628876036,0.228776338225572,0,0,0,-0.407691907826361,0,0.424741889059097,0.378372750303937,0.51971620638688,-0.492261496770176,-0.215894122468055,-0.0524856337771335,0.378461688400943,-0.0395325284566706,0.72016135433369,0,-0.242846385198166,0,0.550831268649987,0.194015514643852,0.0245842733177573,0.000119402315356787,0.764283465254088,0,1.1106799652023,-0.0683442610773682,0.231484561279201,-0.005560862300523,0.359627021725068,0,0,-0.0279459622214252,0,0,0.488913032888409,0,0,0.0309194141911913,0.246539366392513,0.124596317855523,0,0.209662934726463,0,0.171593072873971,0,-0.0579131639754468,0,0,0.758054109942804,0,0.237423805411457,0.0893696404745659,-0.153936162542,-0.422394805391737,-0.0584468268118252,-0.0463092700366287,0.62283307104241,0.619787968786809,-0.788939864790226,0.188395928877938,-0.0881268324752877,0,0.213267723798409,0.76496487738911,0.294975050414557,-0.035123667071177,0,0.201160702632889,0,0.689359703128905,0.142874152424558,0.333009165137065,0.0103975171767466,1.68734993349558,0.101351431592339,0,0.599873330918578,-0.788130937773974,0.163527564250207,0.306304155554651,0,0,-0.150367083334639,-0.697695966512583,0.0637652064604045,-0.138989456679195,0,-0.00404864896697743,0,0,0.41891170004911,-0.235476037764389,0,-0.432035078618461,-0.609202914213396,-0.604216041195295,-0.115971073434934,0,0,-0.645700337992725,0,0,-0.60592806381803,0,0.317974982494482,0.92427146574353,0.197965564395311,-0.108622809454255,0,0,-0.177527765965176,0.357451879411068,-0.0130984696078935,0,0,0.143134458112516,-0.116628112990133,0,0,0,-0.195265690557764,0,-0.0589565109853561,0,0,0.261466832285121,0,0,-0.348498526549977,0.195997938433539,0.357451879411068,0.0491006686050813,0,0,0,0,0,0,0,0,-1.59233083881968,-0.0968332978427447,-0.12301741567642,0,0,0,0,-0.215723402553475,0.154215317316344,0,-0.131862706497632,0,0,0,0,-0.0861409897892114,0,0,0,0,-0.057730457053664,-0.52308379245695,0,0,0,-0.27695440160179,0,0,0,0,0.729423012460678,0,0,-0.63193017338638,0,0.242507021997298,-0.0815818795468414,0,0.187056341793875,-0.58080419941139,-0.62545767690936,0,0,0.0961047476211807,0,0,0.240161682497744,-0.0823702229656663,0,0,0,0,0,0,0,0.937758306453115,-0.214314512399756,0,0,0,0,0,0,0,0,0,0,0,0.00726287945573678,-0.0922240566585104,-0.0640596705171081,0,0,0,0,0,0,-0.0241060230789031,-0.726993749846053,0,0,0,0,0,0,0,0,-0.113974060252174,0,0,0,0,0,-0.0969923612426051,0,0,0,0,-0.564807121153884,0,0,-0.277362132193514,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,-0.87687367204199,0,0,0,0,0,0,0,-0.27483329820609,0,0,0,0,0.43694689494101,0,0,0,0.252655494621912,0,-0.160318030086386,0,0,0.357451879411068,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0707990621797501,0,0,0.191661239968817,0,0,-0.0539024129275075,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0348580438050884,0,0,0,0,0,0,0,-0.0979578962680575,0,0,0.0866931299050078,0,0,0,0,0,0,0.054104491212842,-0.283220399823148,0.175403346501812,0,0,0,0.414493580744102,0,0,0,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,-0.213086229657044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.405428866950395,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0482220752390542,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.550831268649987,-0.550504042515712,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0,0.178725939705534,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.253610608288505,0,0,-0.13930253901742,0,0,0,0,0,0,0,0,0,0,0,0,-0.0613201791501264,0,0,0,0,0,0,0,0,0,0,-0.0484300422256687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.357451879411068,0,0,0,0,0,0,0,-0.167926708805576,-0.34454841572037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0795196562829565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.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| |||
|rna_box=128 | |rna_box=128 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=0.1728 | |rna_weight_ug=0.1728 | ||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.73999433746956e-208!GO:0043227;membrane-bound organelle;7.0594064448837e-184!GO:0043231;intracellular membrane-bound organelle;1.1567237626541e-183!GO:0043226;organelle;1.98620462149936e-166!GO:0043229;intracellular organelle;6.6368928321514e-166!GO:0005737;cytoplasm;1.68577190434483e-113!GO:0005634;nucleus;5.3566633119539e-105!GO:0044422;organelle part;1.12407064407175e-95!GO:0044446;intracellular organelle part;3.70683653800175e-94!GO:0043170;macromolecule metabolic process;1.08660338128209e-92!GO:0044238;primary metabolic process;3.96309819743459e-92!GO:0044237;cellular metabolic process;3.29273417019755e-91!GO:0043283;biopolymer metabolic process;2.5602201782217e-79!GO:0044428;nuclear part;2.59078628189779e-69!GO:0044444;cytoplasmic part;4.038977719642e-66!GO:0043233;organelle lumen;1.19285920106926e-59!GO:0031974;membrane-enclosed lumen;1.19285920106926e-59!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.88860942207977e-56!GO:0005515;protein binding;1.70045196889015e-55!GO:0003723;RNA binding;1.07812916987272e-49!GO:0032991;macromolecular complex;2.44935158412697e-48!GO:0006259;DNA metabolic process;1.60517819965226e-46!GO:0000166;nucleotide binding;6.79872570916383e-45!GO:0019538;protein metabolic process;6.5445139143385e-44!GO:0031981;nuclear lumen;1.09671174165451e-43!GO:0044267;cellular protein metabolic process;1.83823911706041e-41!GO:0044260;cellular macromolecule metabolic process;4.26449199583647e-41!GO:0010467;gene expression;3.4574522329462e-40!GO:0005524;ATP binding;8.95546613564824e-38!GO:0032559;adenyl ribonucleotide binding;1.08191555577219e-37!GO:0033036;macromolecule localization;2.06495175542167e-36!GO:0030554;adenyl nucleotide binding;6.84394748844166e-36!GO:0032553;ribonucleotide binding;6.94826886974695e-36!GO:0032555;purine ribonucleotide binding;6.94826886974695e-36!GO:0043412;biopolymer modification;5.30466896176739e-35!GO:0017076;purine nucleotide binding;1.37952865456239e-34!GO:0006396;RNA processing;1.86332706792871e-34!GO:0003676;nucleic acid binding;2.87725757048037e-34!GO:0015031;protein transport;4.41872371003357e-34!GO:0016043;cellular component organization and biogenesis;1.17002894988404e-33!GO:0005739;mitochondrion;1.94830409673674e-33!GO:0008104;protein localization;2.67611107083661e-32!GO:0045184;establishment of protein localization;3.05197119237728e-32!GO:0007049;cell cycle;4.92877215004615e-31!GO:0006464;protein modification process;2.36160556925651e-30!GO:0016070;RNA metabolic process;2.05358703290142e-29!GO:0006996;organelle organization and biogenesis;2.31863965704294e-29!GO:0016071;mRNA metabolic process;4.64805543914278e-29!GO:0043234;protein complex;6.10708262849851e-29!GO:0030529;ribonucleoprotein complex;1.88690397842538e-28!GO:0043687;post-translational protein modification;4.9431244803703e-28!GO:0005654;nucleoplasm;1.01149551302468e-27!GO:0031090;organelle membrane;1.01471135020078e-27!GO:0046907;intracellular transport;3.00665911095075e-27!GO:0016874;ligase activity;2.79317107417435e-25!GO:0051276;chromosome organization and biogenesis;4.69164116770757e-25!GO:0006512;ubiquitin cycle;5.72169930127073e-25!GO:0006886;intracellular protein transport;1.1516246016118e-24!GO:0065003;macromolecular complex assembly;7.35277501954553e-24!GO:0031967;organelle envelope;7.65533845047545e-24!GO:0031975;envelope;1.37834150247443e-23!GO:0022402;cell cycle process;2.30103965145491e-23!GO:0006974;response to DNA damage stimulus;1.03083411040582e-22!GO:0044451;nucleoplasm part;4.46809095230428e-22!GO:0006397;mRNA processing;1.1363577669254e-21!GO:0005694;chromosome;2.78581056139635e-21!GO:0006325;establishment and/or maintenance of chromatin architecture;3.09251119417748e-21!GO:0022607;cellular component assembly;8.21737808233913e-21!GO:0051649;establishment of cellular localization;1.38596102035754e-20!GO:0006281;DNA repair;2.17152415012244e-20!GO:0044429;mitochondrial part;2.54645526585979e-20!GO:0016462;pyrophosphatase activity;2.88006882823273e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.2091987806044e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;3.26233920756758e-20!GO:0006323;DNA packaging;3.64063070074895e-20!GO:0051641;cellular localization;3.64063070074895e-20!GO:0017111;nucleoside-triphosphatase activity;6.73181169140986e-20!GO:0006412;translation;1.01558485402253e-19!GO:0008380;RNA splicing;1.40296410580005e-19!GO:0016740;transferase activity;4.13983950451607e-19!GO:0006260;DNA replication;5.13458042366132e-19!GO:0016568;chromatin modification;5.32058624811257e-19!GO:0000278;mitotic cell cycle;6.80496477246296e-19!GO:0043228;non-membrane-bound organelle;1.95229509382136e-18!GO:0043232;intracellular non-membrane-bound organelle;1.95229509382136e-18!GO:0008134;transcription factor binding;3.56360447910372e-18!GO:0009059;macromolecule biosynthetic process;3.93942522730483e-18!GO:0022613;ribonucleoprotein complex biogenesis and assembly;6.44365134840321e-18!GO:0044427;chromosomal part;6.56273387031379e-18!GO:0016887;ATPase activity;8.56186775616451e-18!GO:0042623;ATPase activity, coupled;1.22562936677133e-17!GO:0044265;cellular macromolecule catabolic process;2.48120564002384e-17!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.75740871924634e-17!GO:0004386;helicase activity;7.32191003883818e-17!GO:0006793;phosphorus metabolic process;1.28803801030618e-16!GO:0006796;phosphate metabolic process;1.28803801030618e-16!GO:0009058;biosynthetic process;2.29069945801146e-16!GO:0005730;nucleolus;2.45244270222521e-16!GO:0022403;cell cycle phase;4.44950702273865e-16!GO:0005829;cytosol;9.05612165849039e-16!GO:0006511;ubiquitin-dependent protein catabolic process;2.20839239218088e-15!GO:0019941;modification-dependent protein catabolic process;3.20697759984749e-15!GO:0043632;modification-dependent macromolecule catabolic process;3.20697759984749e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;3.78464247685754e-15!GO:0009719;response to endogenous stimulus;3.87329094929801e-15!GO:0044257;cellular protein catabolic process;6.05991188806159e-15!GO:0006913;nucleocytoplasmic transport;7.09994168988988e-15!GO:0043285;biopolymer catabolic process;7.18739696176376e-15!GO:0051169;nuclear transport;1.63615107487626e-14!GO:0016310;phosphorylation;1.9197968619986e-14!GO:0050794;regulation of cellular process;1.9844966357973e-14!GO:0016604;nuclear body;3.76165275056783e-14!GO:0044453;nuclear membrane part;5.61732169907653e-14!GO:0004674;protein serine/threonine kinase activity;7.03487974193906e-14!GO:0031965;nuclear membrane;9.41581373558318e-14!GO:0006605;protein targeting;1.21251900703638e-13!GO:0012501;programmed cell death;1.54406692999814e-13!GO:0006915;apoptosis;1.80467813031076e-13!GO:0008639;small protein conjugating enzyme activity;1.82626868163426e-13!GO:0000087;M phase of mitotic cell cycle;2.75683181909033e-13!GO:0044249;cellular biosynthetic process;2.85751310162227e-13!GO:0005681;spliceosome;3.20941101750254e-13!GO:0005643;nuclear pore;3.29480599350016e-13!GO:0009057;macromolecule catabolic process;3.34606225929645e-13!GO:0007067;mitosis;3.76095903530959e-13!GO:0051301;cell division;4.00886218539142e-13!GO:0004842;ubiquitin-protein ligase activity;4.32279998115525e-13!GO:0051726;regulation of cell cycle;4.53589875855929e-13!GO:0012505;endomembrane system;5.86331907730968e-13!GO:0005635;nuclear envelope;6.33008715152921e-13!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.5422079624691e-13!GO:0044248;cellular catabolic process;7.09907074449971e-13!GO:0006403;RNA localization;8.40660158767122e-13!GO:0008026;ATP-dependent helicase activity;1.35423028548003e-12!GO:0008219;cell death;1.35544657789097e-12!GO:0016265;death;1.35544657789097e-12!GO:0050657;nucleic acid transport;1.37111802175498e-12!GO:0051236;establishment of RNA localization;1.37111802175498e-12!GO:0050658;RNA transport;1.37111802175498e-12!GO:0000279;M phase;1.4382178995045e-12!GO:0000074;regulation of progression through cell cycle;1.55857739338333e-12!GO:0005740;mitochondrial envelope;1.8200994323939e-12!GO:0019222;regulation of metabolic process;9.17390633849535e-12!GO:0031966;mitochondrial membrane;1.22924840081678e-11!GO:0016607;nuclear speck;1.38822618273221e-11!GO:0005794;Golgi apparatus;1.45957876928924e-11!GO:0019787;small conjugating protein ligase activity;1.57471298258988e-11!GO:0016881;acid-amino acid ligase activity;2.19485803572582e-11!GO:0003712;transcription cofactor activity;3.04547335308557e-11!GO:0000785;chromatin;3.09454783498083e-11!GO:0019866;organelle inner membrane;3.09454783498083e-11!GO:0046930;pore complex;3.1940023327543e-11!GO:0030163;protein catabolic process;3.25344888550173e-11!GO:0005840;ribosome;3.67238953078307e-11!GO:0016192;vesicle-mediated transport;4.21776717101222e-11!GO:0022618;protein-RNA complex assembly;5.29780115765982e-11!GO:0016787;hydrolase activity;5.79054682566722e-11!GO:0051028;mRNA transport;6.9598687918531e-11!GO:0006457;protein folding;1.21676359078992e-10!GO:0006333;chromatin assembly or disassembly;1.26585821071079e-10!GO:0031323;regulation of cellular metabolic process;1.80154266121988e-10!GO:0006261;DNA-dependent DNA replication;2.16631013658619e-10!GO:0017038;protein import;2.24197352455482e-10!GO:0048770;pigment granule;2.56005042557095e-10!GO:0042470;melanosome;2.56005042557095e-10!GO:0016301;kinase activity;4.07807592297117e-10!GO:0008135;translation factor activity, nucleic acid binding;4.52973459118952e-10!GO:0050789;regulation of biological process;5.13774237815164e-10!GO:0031980;mitochondrial lumen;6.88625413559583e-10!GO:0005759;mitochondrial matrix;6.88625413559583e-10!GO:0006366;transcription from RNA polymerase II promoter;7.15167511288602e-10!GO:0016773;phosphotransferase activity, alcohol group as acceptor;2.09868202369911e-09!GO:0005743;mitochondrial inner membrane;2.63381520085823e-09!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.63381520085823e-09!GO:0006350;transcription;3.01357727043468e-09!GO:0065002;intracellular protein transport across a membrane;5.20676594779519e-09!GO:0006399;tRNA metabolic process;5.25677381921321e-09!GO:0005813;centrosome;6.3674331587883e-09!GO:0033279;ribosomal subunit;6.70316233689049e-09!GO:0044445;cytosolic part;6.94938667224427e-09!GO:0005815;microtubule organizing center;7.96870479785249e-09!GO:0005830;cytosolic ribosome (sensu Eukaryota);8.42523000166969e-09!GO:0015630;microtubule cytoskeleton;1.01547881362676e-08!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.05974906906846e-08!GO:0010468;regulation of gene expression;1.07091292799054e-08!GO:0051082;unfolded protein binding;1.38726274616898e-08!GO:0019899;enzyme binding;1.48113326268872e-08!GO:0008565;protein transporter activity;1.48757172838437e-08!GO:0003735;structural constituent of ribosome;1.50815634559255e-08!GO:0032446;protein modification by small protein conjugation;1.64215252918118e-08!GO:0006468;protein amino acid phosphorylation;2.36235806096885e-08!GO:0006606;protein import into nucleus;2.4285264769164e-08!GO:0016567;protein ubiquitination;2.56341328360785e-08!GO:0051170;nuclear import;3.34741453132575e-08!GO:0005819;spindle;3.54834927149208e-08!GO:0007242;intracellular signaling cascade;3.57595350097207e-08!GO:0003743;translation initiation factor activity;4.05680391151006e-08!GO:0016563;transcription activator activity;4.5905497330492e-08!GO:0006446;regulation of translational initiation;6.86421855909493e-08!GO:0042981;regulation of apoptosis;7.4952226384095e-08!GO:0065004;protein-DNA complex assembly;7.51968878808919e-08!GO:0048193;Golgi vesicle transport;8.2615057472598e-08!GO:0043067;regulation of programmed cell death;9.81474587140331e-08!GO:0006413;translational initiation;1.01539257148074e-07!GO:0016779;nucleotidyltransferase activity;1.03413852380287e-07!GO:0065009;regulation of a molecular function;1.15506299632457e-07!GO:0043566;structure-specific DNA binding;1.37539991311511e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.40712694927261e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.40712694927261e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.40712694927261e-07!GO:0030695;GTPase regulator activity;1.41848621330212e-07!GO:0032774;RNA biosynthetic process;1.62007474426902e-07!GO:0006461;protein complex assembly;1.80540861941753e-07!GO:0044432;endoplasmic reticulum part;1.96213768338597e-07!GO:0000151;ubiquitin ligase complex;2.00689902646104e-07!GO:0006351;transcription, DNA-dependent;2.32262965795074e-07!GO:0051329;interphase of mitotic cell cycle;2.47906560552727e-07!GO:0051325;interphase;2.76412959688887e-07!GO:0000287;magnesium ion binding;3.01355667451883e-07!GO:0003713;transcription coactivator activity;3.4260309362619e-07!GO:0007243;protein kinase cascade;3.50527017726111e-07!GO:0042254;ribosome biogenesis and assembly;3.9228533117855e-07!GO:0043038;amino acid activation;4.71144397805959e-07!GO:0006418;tRNA aminoacylation for protein translation;4.71144397805959e-07!GO:0043039;tRNA aminoacylation;4.71144397805959e-07!GO:0005768;endosome;4.94984388754701e-07!GO:0045449;regulation of transcription;5.05804266574584e-07!GO:0016564;transcription repressor activity;6.27958656622986e-07!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.27958656622986e-07!GO:0000398;nuclear mRNA splicing, via spliceosome;6.58917605641987e-07!GO:0000375;RNA splicing, via transesterification reactions;6.58917605641987e-07!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;6.58917605641987e-07!GO:0009056;catabolic process;6.77309082883976e-07!GO:0003677;DNA binding;7.21170953031806e-07!GO:0003697;single-stranded DNA binding;7.3323520987336e-07!GO:0065007;biological regulation;8.56455844002091e-07!GO:0045786;negative regulation of progression through cell cycle;9.90079891138736e-07!GO:0005096;GTPase activator activity;1.92275772546743e-06!GO:0005793;ER-Golgi intermediate compartment;2.13739659081945e-06!GO:0051168;nuclear export;2.14034506990662e-06!GO:0016741;transferase activity, transferring one-carbon groups;2.37268059151396e-06!GO:0008047;enzyme activator activity;2.40335280225709e-06!GO:0031324;negative regulation of cellular metabolic process;2.62391739801979e-06!GO:0008168;methyltransferase activity;3.81732698901359e-06!GO:0016481;negative regulation of transcription;3.97552034329612e-06!GO:0005083;small GTPase regulator activity;4.06773249447023e-06!GO:0006364;rRNA processing;4.20214870492702e-06!GO:0005783;endoplasmic reticulum;4.37612618764007e-06!GO:0000075;cell cycle checkpoint;4.92037292759085e-06!GO:0004672;protein kinase activity;5.59856775166783e-06!GO:0006355;regulation of transcription, DNA-dependent;6.13840974918368e-06!GO:0015935;small ribosomal subunit;6.49285384721567e-06!GO:0006119;oxidative phosphorylation;7.46481814721086e-06!GO:0048523;negative regulation of cellular process;8.2477758244068e-06!GO:0031497;chromatin assembly;1.08983984612827e-05!GO:0050790;regulation of catalytic activity;1.12309573962896e-05!GO:0016072;rRNA metabolic process;1.28623465881142e-05!GO:0000775;chromosome, pericentric region;1.35313426002504e-05!GO:0044455;mitochondrial membrane part;1.38858438362784e-05!GO:0009259;ribonucleotide metabolic process;1.44978709781425e-05!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.62261297854275e-05!GO:0008094;DNA-dependent ATPase activity;1.63037053923809e-05!GO:0003682;chromatin binding;1.70681124749203e-05!GO:0032508;DNA duplex unwinding;1.79648489532669e-05!GO:0032392;DNA geometric change;1.79648489532669e-05!GO:0006401;RNA catabolic process;1.936781882157e-05!GO:0003690;double-stranded DNA binding;1.97851540545722e-05!GO:0051186;cofactor metabolic process;1.98246632628609e-05!GO:0008654;phospholipid biosynthetic process;2.05271819582637e-05!GO:0005667;transcription factor complex;2.17783284765797e-05!GO:0008276;protein methyltransferase activity;2.2273142891898e-05!GO:0006402;mRNA catabolic process;2.35474080949515e-05!GO:0006916;anti-apoptosis;2.3782622669849e-05!GO:0043623;cellular protein complex assembly;2.42602959317793e-05!GO:0006163;purine nucleotide metabolic process;2.8676044998048e-05!GO:0009260;ribonucleotide biosynthetic process;2.91511449375338e-05!GO:0003724;RNA helicase activity;2.99037330643524e-05!GO:0043069;negative regulation of programmed cell death;2.99512074701276e-05!GO:0044431;Golgi apparatus part;3.01655630304771e-05!GO:0006164;purine nucleotide biosynthetic process;3.12013623650945e-05!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;3.21389576537438e-05!GO:0016279;protein-lysine N-methyltransferase activity;3.31451489759701e-05!GO:0018024;histone-lysine N-methyltransferase activity;3.31451489759701e-05!GO:0016278;lysine N-methyltransferase activity;3.31451489759701e-05!GO:0043066;negative regulation of apoptosis;3.67040112299786e-05!GO:0003684;damaged DNA binding;3.82468929968051e-05!GO:0006334;nucleosome assembly;3.99835011156741e-05!GO:0007264;small GTPase mediated signal transduction;4.46094099179714e-05!GO:0008270;zinc ion binding;4.48072211306482e-05!GO:0005788;endoplasmic reticulum lumen;4.52755594236081e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;5.00592456269501e-05!GO:0004437;inositol or phosphatidylinositol phosphatase activity;5.03979231500286e-05!GO:0051246;regulation of protein metabolic process;5.05717661444709e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;5.23452533916313e-05!GO:0005773;vacuole;5.78777012450824e-05!GO:0000502;proteasome complex (sensu Eukaryota);6.25346655209534e-05!GO:0042054;histone methyltransferase activity;6.33513020475772e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.4101539799312e-05!GO:0040029;regulation of gene expression, epigenetic;6.65317618099191e-05!GO:0007265;Ras protein signal transduction;6.82160575032039e-05!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;7.05441602999284e-05!GO:0043414;biopolymer methylation;7.9526731984246e-05!GO:0003714;transcription corepressor activity;8.11468717644232e-05!GO:0051427;hormone receptor binding;8.3592785193796e-05!GO:0006268;DNA unwinding during replication;8.38899166343284e-05!GO:0005769;early endosome;8.96901201273149e-05!GO:0005789;endoplasmic reticulum membrane;0.000107060394078964!GO:0000118;histone deacetylase complex;0.000109695668725959!GO:0019829;cation-transporting ATPase activity;0.000109969181079488!GO:0006310;DNA recombination;0.000114663511768836!GO:0009150;purine ribonucleotide metabolic process;0.000116892313839701!GO:0046914;transition metal ion binding;0.000128126442441224!GO:0009152;purine ribonucleotide biosynthetic process;0.000132146500865293!GO:0009892;negative regulation of metabolic process;0.000147036195677514!GO:0032259;methylation;0.000147468113210051!GO:0035257;nuclear hormone receptor binding;0.000149194373777689!GO:0008170;N-methyltransferase activity;0.0001741928937036!GO:0000922;spindle pole;0.000176914851984289!GO:0006732;coenzyme metabolic process;0.00017947288580505!GO:0048519;negative regulation of biological process;0.000183230675606426!GO:0008234;cysteine-type peptidase activity;0.000188106759923305!GO:0006888;ER to Golgi vesicle-mediated transport;0.000204469912588718!GO:0000323;lytic vacuole;0.000226365776366974!GO:0005764;lysosome;0.000226365776366974!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000266466742798366!GO:0015399;primary active transmembrane transporter activity;0.000266466742798366!GO:0003678;DNA helicase activity;0.000276207756129572!GO:0005657;replication fork;0.000280964832326254!GO:0016363;nuclear matrix;0.000343881528426989!GO:0000059;protein import into nucleus, docking;0.000371906156491283!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000381464651275394!GO:0048475;coated membrane;0.000474965476030496!GO:0030117;membrane coat;0.000474965476030496!GO:0043492;ATPase activity, coupled to movement of substances;0.000515938112087705!GO:0008186;RNA-dependent ATPase activity;0.000515938112087705!GO:0000139;Golgi membrane;0.000626271275640072!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00062906073291842!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;0.000636854483465911!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000639050600252256!GO:0006611;protein export from nucleus;0.000714366363436792!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000726086945574405!GO:0050136;NADH dehydrogenase (quinone) activity;0.000737546999734897!GO:0003954;NADH dehydrogenase activity;0.000737546999734897!GO:0008137;NADH dehydrogenase (ubiquinone) activity;0.000737546999734897!GO:0006302;double-strand break repair;0.000738094729970331!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.000757508672318033!GO:0005770;late endosome;0.000783600501482317!GO:0006405;RNA export from nucleus;0.000817852168878837!GO:0042802;identical protein binding;0.000834577658736977!GO:0005099;Ras GTPase activator activity;0.000856413201080179!GO:0031072;heat shock protein binding;0.000856413201080179!GO:0016044;membrane organization and biogenesis;0.000872109462001643!GO:0009117;nucleotide metabolic process;0.00090978044078639!GO:0030120;vesicle coat;0.000927623172108953!GO:0030662;coated vesicle membrane;0.000927623172108953!GO:0005746;mitochondrial respiratory chain;0.000936522704313058!GO:0007051;spindle organization and biogenesis;0.000940627922147701!GO:0015934;large ribosomal subunit;0.000964718119125935!GO:0006338;chromatin remodeling;0.000981760294761984!GO:0016569;covalent chromatin modification;0.000988044736257507!GO:0006950;response to stress;0.00105987430700889!GO:0007005;mitochondrion organization and biogenesis;0.00108086416524346!GO:0019783;small conjugating protein-specific protease activity;0.00109418850277128!GO:0008139;nuclear localization sequence binding;0.00110017094843876!GO:0030384;phosphoinositide metabolic process;0.00110017094843876!GO:0030145;manganese ion binding;0.0011131536498049!GO:0006650;glycerophospholipid metabolic process;0.00112333899548199!GO:0004527;exonuclease activity;0.00115508789095695!GO:0030258;lipid modification;0.00125163606804732!GO:0051188;cofactor biosynthetic process;0.00127174894835046!GO:0007059;chromosome segregation;0.00127174894835046!GO:0043087;regulation of GTPase activity;0.00129325639535183!GO:0000776;kinetochore;0.00133277567486791!GO:0032200;telomere organization and biogenesis;0.00133277567486791!GO:0000723;telomere maintenance;0.00133277567486791!GO:0004004;ATP-dependent RNA helicase activity;0.00149812080876546!GO:0004843;ubiquitin-specific protease activity;0.00152195285744151!GO:0030518;steroid hormone receptor signaling pathway;0.00159518044801694!GO:0005637;nuclear inner membrane;0.00166531076928257!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;0.00168856823173353!GO:0015631;tubulin binding;0.00170965151291827!GO:0003887;DNA-directed DNA polymerase activity;0.00172526085802663!GO:0016311;dephosphorylation;0.00174261769962717!GO:0003899;DNA-directed RNA polymerase activity;0.00182426215172401!GO:0009141;nucleoside triphosphate metabolic process;0.00183051349652873!GO:0042393;histone binding;0.00189836910818322!GO:0004518;nuclease activity;0.00190021486009257!GO:0015923;mannosidase activity;0.00192470568799637!GO:0051338;regulation of transferase activity;0.00195458805458387!GO:0009142;nucleoside triphosphate biosynthetic process;0.00199434411600263!GO:0009201;ribonucleoside triphosphate biosynthetic process;0.00199434411600263!GO:0000792;heterochromatin;0.00204807669804392!GO:0009199;ribonucleoside triphosphate metabolic process;0.00205483597550575!GO:0018193;peptidyl-amino acid modification;0.0021273544356279!GO:0035258;steroid hormone receptor binding;0.00214064775217131!GO:0005876;spindle microtubule;0.00227439121736161!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;0.00229816224600711!GO:0008022;protein C-terminus binding;0.00230686684226371!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00230686684226371!GO:0003729;mRNA binding;0.00230686684226371!GO:0046467;membrane lipid biosynthetic process;0.00240543206083828!GO:0016197;endosome transport;0.00259341415174395!GO:0043549;regulation of kinase activity;0.00261610408614359!GO:0004221;ubiquitin thiolesterase activity;0.00262325865671634!GO:0009060;aerobic respiration;0.00268493218971455!GO:0006352;transcription initiation;0.00276831076926953!GO:0007050;cell cycle arrest;0.00280733127012752!GO:0000082;G1/S transition of mitotic cell cycle;0.00290896339402449!GO:0016791;phosphoric monoester hydrolase activity;0.00296092531145945!GO:0045892;negative regulation of transcription, DNA-dependent;0.00313328351698573!GO:0031625;ubiquitin protein ligase binding;0.00313373335962026!GO:0000781;chromosome, telomeric region;0.00318064531211192!GO:0032318;regulation of Ras GTPase activity;0.00318064531211192!GO:0005798;Golgi-associated vesicle;0.00327592249933172!GO:0051052;regulation of DNA metabolic process;0.00328188847865584!GO:0051336;regulation of hydrolase activity;0.00338844172793967!GO:0032603;fractalkine production;0.00338844172793967!GO:0050725;positive regulation of interleukin-1 beta biosynthetic process;0.00338844172793967!GO:0050752;regulation of fractalkine biosynthetic process;0.00338844172793967!GO:0045362;positive regulation of interleukin-1 biosynthetic process;0.00338844172793967!GO:0050754;positive regulation of fractalkine biosynthetic process;0.00338844172793967!GO:0001774;microglial cell activation;0.00338844172793967!GO:0050756;fractalkine metabolic process;0.00338844172793967!GO:0005766;primary lysosome;0.00338844172793967!GO:0050751;fractalkine biosynthetic process;0.00338844172793967!GO:0042222;interleukin-1 biosynthetic process;0.00338844172793967!GO:0050722;regulation of interleukin-1 beta biosynthetic process;0.00338844172793967!GO:0045360;regulation of interleukin-1 biosynthetic process;0.00338844172793967!GO:0042582;azurophil granule;0.00338844172793967!GO:0050720;interleukin-1 beta biosynthetic process;0.00338844172793967!GO:0016788;hydrolase activity, acting on ester bonds;0.00348044660505899!GO:0006672;ceramide metabolic process;0.00355281047096044!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);0.00356848048693008!GO:0009205;purine ribonucleoside triphosphate metabolic process;0.00356881467960052!GO:0009144;purine nucleoside triphosphate metabolic process;0.00356881467960052!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;0.00359322681641319!GO:0009145;purine nucleoside triphosphate biosynthetic process;0.00359322681641319!GO:0006897;endocytosis;0.00362063585832982!GO:0010324;membrane invagination;0.00362063585832982!GO:0016790;thiolester hydrolase activity;0.00368823864334818!GO:0000245;spliceosome assembly;0.00373429884642014!GO:0008033;tRNA processing;0.00373650104734687!GO:0006270;DNA replication initiation;0.00379862977616365!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00381648752889711!GO:0006304;DNA modification;0.00382301673698757!GO:0030964;NADH dehydrogenase complex (quinone);0.00385959769534967!GO:0045271;respiratory chain complex I;0.00385959769534967!GO:0005747;mitochondrial respiratory chain complex I;0.00385959769534967!GO:0007093;mitotic cell cycle checkpoint;0.00386958342788293!GO:0046474;glycerophospholipid biosynthetic process;0.00386958342788293!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.0039435095682927!GO:0044440;endosomal part;0.00394963664798629!GO:0010008;endosome membrane;0.00394963664798629!GO:0046578;regulation of Ras protein signal transduction;0.00397289641006785!GO:0006607;NLS-bearing substrate import into nucleus;0.00399618145555826!GO:0051056;regulation of small GTPase mediated signal transduction;0.00436558925548423!GO:0030522;intracellular receptor-mediated signaling pathway;0.00449061177714857!GO:0019904;protein domain specific binding;0.00452159821886662!GO:0005874;microtubule;0.00460238066208376!GO:0016251;general RNA polymerase II transcription factor activity;0.00496022231013916!GO:0016570;histone modification;0.00497806758921867!GO:0046983;protein dimerization activity;0.00526686702013652!GO:0048471;perinuclear region of cytoplasm;0.00537556995401137!GO:0045859;regulation of protein kinase activity;0.00545763893242992!GO:0042775;organelle ATP synthesis coupled electron transport;0.0057373624082508!GO:0042773;ATP synthesis coupled electron transport;0.0057373624082508!GO:0009108;coenzyme biosynthetic process;0.00578628814759658!GO:0008017;microtubule binding;0.00578628814759658!GO:0031252;leading edge;0.00578773180056198!GO:0051252;regulation of RNA metabolic process;0.00578810849384536!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.00583527561908151!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;0.0058842310214933!GO:0015986;ATP synthesis coupled proton transport;0.00598836959286304!GO:0015985;energy coupled proton transport, down electrochemical gradient;0.00598836959286304!GO:0030658;transport vesicle membrane;0.00598836959286304!GO:0046519;sphingoid metabolic process;0.0060107935614055!GO:0044452;nucleolar part;0.0061019568611791!GO:0044262;cellular carbohydrate metabolic process;0.00636717486599151!GO:0007088;regulation of mitosis;0.00636717486599151!GO:0006406;mRNA export from nucleus;0.00672358304491324!GO:0006383;transcription from RNA polymerase III promoter;0.00679610742040838!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00756022980922781!GO:0015078;hydrogen ion transmembrane transporter activity;0.00757128196616131!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;0.0075713792854142!GO:0016458;gene silencing;0.00769786650383223!GO:0008632;apoptotic program;0.00772296430568798!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00790624605571072!GO:0016584;nucleosome positioning;0.00791060374534005!GO:0000228;nuclear chromosome;0.0079312165932637!GO:0006284;base-excision repair;0.00806472302627139!GO:0006643;membrane lipid metabolic process;0.00825877055431984!GO:0004722;protein serine/threonine phosphatase activity;0.00877945672538072!GO:0045454;cell redox homeostasis;0.00887489783905672!GO:0006730;one-carbon compound metabolic process;0.00889292311730679!GO:0031570;DNA integrity checkpoint;0.00922263066809698!GO:0016469;proton-transporting two-sector ATPase complex;0.00924050367732872!GO:0051320;S phase;0.00943086774401923!GO:0046489;phosphoinositide biosynthetic process;0.00961373370115396!GO:0006289;nucleotide-excision repair;0.00987727976794731!GO:0007006;mitochondrial membrane organization and biogenesis;0.00995256003687324!GO:0006644;phospholipid metabolic process;0.0100158761181331!GO:0009966;regulation of signal transduction;0.0102513724977873!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0103806204911748!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0104005687510502!GO:0005525;GTP binding;0.0104433229711582!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0105743904752022!GO:0046822;regulation of nucleocytoplasmic transport;0.0105947653259922!GO:0009055;electron carrier activity;0.0105947653259922!GO:0030521;androgen receptor signaling pathway;0.0105947653259922!GO:0005741;mitochondrial outer membrane;0.0110501863669377!GO:0003725;double-stranded RNA binding;0.0111580628352699!GO:0006013;mannose metabolic process;0.0112339363711921!GO:0000152;nuclear ubiquitin ligase complex;0.0114304314033939!GO:0004428;inositol or phosphatidylinositol kinase activity;0.011493990515773!GO:0007052;mitotic spindle organization and biogenesis;0.0117008674610115!GO:0006754;ATP biosynthetic process;0.0118686446768378!GO:0006753;nucleoside phosphate metabolic process;0.0118686446768378!GO:0046034;ATP metabolic process;0.0119084466557683!GO:0031982;vesicle;0.0120057980980717!GO:0009124;nucleoside monophosphate biosynthetic process;0.0120057980980717!GO:0009123;nucleoside monophosphate metabolic process;0.0120057980980717!GO:0000790;nuclear chromatin;0.0120446514266801!GO:0043506;regulation of JNK activity;0.01207849712122!GO:0044454;nuclear chromosome part;0.0127050395977575!GO:0030660;Golgi-associated vesicle membrane;0.013045062656598!GO:0005048;signal sequence binding;0.0135906760959207!GO:0007259;JAK-STAT cascade;0.0136224826561947!GO:0016566;specific transcriptional repressor activity;0.0141776243351142!GO:0005885;Arp2/3 protein complex;0.0142788416097272!GO:0004559;alpha-mannosidase activity;0.0144144164106615!GO:0044438;microbody part;0.0144774612784092!GO:0044439;peroxisomal part;0.0144774612784092!GO:0017091;AU-rich element binding;0.0145352087714694!GO:0050779;RNA destabilization;0.0145352087714694!GO:0000289;poly(A) tail shortening;0.0145352087714694!GO:0007346;regulation of progression through mitotic cell cycle;0.0147524446315584!GO:0048487;beta-tubulin binding;0.0147939866121827!GO:0009165;nucleotide biosynthetic process;0.0148248772891181!GO:0008173;RNA methyltransferase activity;0.0155232367855992!GO:0016585;chromatin remodeling complex;0.0156006103971784!GO:0006306;DNA methylation;0.0159934115378901!GO:0006305;DNA alkylation;0.0159934115378901!GO:0045815;positive regulation of gene expression, epigenetic;0.0180911572247985!GO:0047485;protein N-terminus binding;0.0181808244094754!GO:0006084;acetyl-CoA metabolic process;0.0181828939617533!GO:0031461;cullin-RING ubiquitin ligase complex;0.0187169755325453!GO:0001832;blastocyst growth;0.0189044850484951!GO:0031647;regulation of protein stability;0.0190289710483955!GO:0004197;cysteine-type endopeptidase activity;0.0190402334401584!GO:0031057;negative regulation of histone modification;0.0190402334401584!GO:0035067;negative regulation of histone acetylation;0.0190402334401584!GO:0006752;group transfer coenzyme metabolic process;0.0194663310521789!GO:0045941;positive regulation of transcription;0.0194897629449645!GO:0033116;ER-Golgi intermediate compartment membrane;0.0196052322818009!GO:0009116;nucleoside metabolic process;0.0196311010854258!GO:0030134;ER to Golgi transport vesicle;0.0201984740399197!GO:0006220;pyrimidine nucleotide metabolic process;0.0206470279643216!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0207207056642745!GO:0005761;mitochondrial ribosome;0.0207207056642745!GO:0000313;organellar ribosome;0.0207207056642745!GO:0043065;positive regulation of apoptosis;0.0209547446250386!GO:0060090;molecular adaptor activity;0.0209865045891092!GO:0046966;thyroid hormone receptor binding;0.0212122174514105!GO:0000910;cytokinesis;0.0213467328141356!GO:0016581;NuRD complex;0.0214259918210046!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0215281288471445!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0215281288471445!GO:0003711;transcription elongation regulator activity;0.0215890791458909!GO:0045333;cellular respiration;0.0218872273624829!GO:0006417;regulation of translation;0.0218983608651607!GO:0031968;organelle outer membrane;0.0219794671516861!GO:0046839;phospholipid dephosphorylation;0.0229382031232208!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0231052299832219!GO:0009161;ribonucleoside monophosphate metabolic process;0.023444772782479!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.023444772782479!GO:0043068;positive regulation of programmed cell death;0.0236927233273313!GO:0009112;nucleobase metabolic process;0.0237622897063595!GO:0008536;Ran GTPase binding;0.0237909445190485!GO:0030118;clathrin coat;0.0237909445190485!GO:0046854;phosphoinositide phosphorylation;0.0241979575380226!GO:0031903;microbody membrane;0.0241979575380226!GO:0005778;peroxisomal membrane;0.0241979575380226!GO:0031410;cytoplasmic vesicle;0.0243478770161928!GO:0035303;regulation of dephosphorylation;0.0245411989680882!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.024633599393173!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0247271682293474!GO:0043488;regulation of mRNA stability;0.0258016236550214!GO:0043487;regulation of RNA stability;0.0258016236550214!GO:0019867;outer membrane;0.0259204390737258!GO:0031988;membrane-bound vesicle;0.0261444280611199!GO:0000084;S phase of mitotic cell cycle;0.0268410803188106!GO:0006520;amino acid metabolic process;0.0268410803188106!GO:0019206;nucleoside kinase activity;0.0270867312149062!GO:0016605;PML body;0.0280580330889471!GO:0006099;tricarboxylic acid cycle;0.0281159729576602!GO:0046356;acetyl-CoA catabolic process;0.0281159729576602!GO:0051059;NF-kappaB binding;0.028513520014841!GO:0005680;anaphase-promoting complex;0.0286834452214653!GO:0030127;COPII vesicle coat;0.0288678571702037!GO:0012507;ER to Golgi transport vesicle membrane;0.0288678571702037!GO:0051098;regulation of binding;0.0288980913916757!GO:0003756;protein disulfide isomerase activity;0.0298073067647237!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0298073067647237!GO:0004177;aminopeptidase activity;0.0298816282675308!GO:0031124;mRNA 3'-end processing;0.03008461156976!GO:0022415;viral reproductive process;0.0314055975884314!GO:0008213;protein amino acid alkylation;0.0314055975884314!GO:0006479;protein amino acid methylation;0.0314055975884314!GO:0043021;ribonucleoprotein binding;0.0315854817677684!GO:0048096;chromatin-mediated maintenance of transcription;0.0323224299329059!GO:0043560;insulin receptor substrate binding;0.0327062531597884!GO:0009266;response to temperature stimulus;0.0328104676444916!GO:0000209;protein polyubiquitination;0.0329134698221119!GO:0005669;transcription factor TFIID complex;0.0339173555346373!GO:0000077;DNA damage checkpoint;0.0340166278731942!GO:0045893;positive regulation of transcription, DNA-dependent;0.0343937989880314!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.0346293913030076!GO:0009081;branched chain family amino acid metabolic process;0.0346946439015946!GO:0015924;mannosyl-oligosaccharide mannosidase activity;0.0351046353174262!GO:0006414;translational elongation;0.0351539992457774!GO:0009083;branched chain family amino acid catabolic process;0.0351917152659236!GO:0000123;histone acetyltransferase complex;0.0352444977735974!GO:0015266;protein channel activity;0.035698992630971!GO:0046965;retinoid X receptor binding;0.0363020364139264!GO:0046834;lipid phosphorylation;0.0373326242520537!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0376580815361466!GO:0035030;phosphoinositide 3-kinase complex, class IA;0.0377240373895892!GO:0006275;regulation of DNA replication;0.0378578873842249!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0379676176588063!GO:0030532;small nuclear ribonucleoprotein complex;0.0380479542179906!GO:0003702;RNA polymerase II transcription factor activity;0.0385679317504189!GO:0005097;Rab GTPase activator activity;0.0388697769891882!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0390468118607693!GO:0006278;RNA-dependent DNA replication;0.0396927036662925!GO:0006917;induction of apoptosis;0.0399952884899613!GO:0007034;vacuolar transport;0.0399952884899613!GO:0032313;regulation of Rab GTPase activity;0.0400725926897056!GO:0032483;regulation of Rab protein signal transduction;0.0400725926897056!GO:0032482;Rab protein signal transduction;0.0400725926897056!GO:0030331;estrogen receptor binding;0.0400725926897056!GO:0031628;opioid receptor binding;0.0400725926897056!GO:0031852;mu-type opioid receptor binding;0.0400725926897056!GO:0003924;GTPase activity;0.0402892748655516!GO:0005070;SH3/SH2 adaptor activity;0.0404931208370506!GO:0050681;androgen receptor binding;0.0407345287497233!GO:0004261;cathepsin G activity;0.0409024815612542!GO:0032561;guanyl ribonucleotide binding;0.041472950958081!GO:0019001;guanyl nucleotide binding;0.041472950958081!GO:0006595;polyamine metabolic process;0.0415781656186581!GO:0007040;lysosome organization and biogenesis;0.0425317711440367!GO:0004239;methionyl aminopeptidase activity;0.0427170550390074!GO:0051318;G1 phase;0.0434103902244306!GO:0043697;cell dedifferentiation;0.0436711209310068!GO:0043696;dedifferentiation;0.0436711209310068!GO:0051223;regulation of protein transport;0.043712560969896!GO:0007020;microtubule nucleation;0.0438164745314478!GO:0019902;phosphatase binding;0.0440965815671286!GO:0016023;cytoplasmic membrane-bound vesicle;0.04411878107415!GO:0006470;protein amino acid dephosphorylation;0.04411878107415!GO:0009615;response to virus;0.0444067768365069!GO:0004003;ATP-dependent DNA helicase activity;0.0452321944660901!GO:0005774;vacuolar membrane;0.0453752903171886!GO:0019377;glycolipid catabolic process;0.0453752903171886!GO:0042700;luteinizing hormone signaling pathway;0.0461048367190833!GO:0048160;primary follicle stage, oogenesis;0.0461048367190833!GO:0031047;RNA-mediated gene silencing;0.0463418149263486!GO:0030374;ligand-dependent nuclear receptor transcription coactivator activity;0.0463418149263486!GO:0006497;protein amino acid lipidation;0.0463418149263486!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0476925295340365!GO:0009127;purine nucleoside monophosphate biosynthetic process;0.0477332410498061!GO:0009167;purine ribonucleoside monophosphate metabolic process;0.0477332410498061!GO:0009126;purine nucleoside monophosphate metabolic process;0.0477332410498061!GO:0009168;purine ribonucleoside monophosphate biosynthetic process;0.0477332410498061!GO:0012502;induction of programmed cell death;0.0479942692692333!GO:0030027;lamellipodium;0.0481613555461915!GO:0046128;purine ribonucleoside metabolic process;0.0481613555461915!GO:0042278;purine nucleoside metabolic process;0.0481613555461915!GO:0007041;lysosomal transport;0.0481613555461915!GO:0048522;positive regulation of cellular process;0.0491930752115899!GO:0047497;mitochondrion transport along microtubule;0.0491930752115899!GO:0007004;telomere maintenance via telomerase;0.0491930752115899!GO:0030041;actin filament polymerization;0.0496090078507886!GO:0016421;CoA carboxylase activity;0.0496090078507886 | |||
|sample_id=12131 | |sample_id=12131 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=bone marrow | |sample_tissue=bone marrow | ||
|top_motifs=MYB:2.37210722674;BREu{core}:2.31506718773;CREB1:2.26572817488;E2F1..5:1.86770770256;FOXN1:1.5739998797;TFDP1:1.30134838639;TFAP2B:1.26415759859;RFX2..5_RFXANK_RFXAP:1.25247743458;TFAP2{A,C}:1.23025495295;PAX5:1.20999880883;ZFP161:1.20058608087;FOXQ1:1.17559665404;EGR1..3:1.16637594272;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.14418970285;PAX8:1.10560630179;ZNF148:1.09071048842;ATF4:1.0877580671;FOXA2:1.08038401114;PAX2:1.06774975715;HAND1,2:1.01411748615;HIF1A:1.00705200959;SPI1:0.963798191383;NANOG:0.931559718004;SP1:0.910303172053;SPIB:0.907425737078;TGIF1:0.876169095122;VSX1,2:0.870388946743;ELF1,2,4:0.860803155327;RXR{A,B,G}:0.801863867365;GATA6:0.792672128486;RUNX1..3:0.79230078145;HIC1:0.78832871328;RFX1:0.778887399117;ZNF143:0.770113672168;MTE{core}:0.678424394276;DMAP1_NCOR{1,2}_SMARC:0.676518145722;ETS1,2:0.641282922914;bHLH_family:0.634335875728;NFIL3:0.621885849959;NANOG{mouse}:0.611925501763;SOX2:0.591039775337;MYOD1:0.589899321227;ATF5_CREB3:0.584771604842;HBP1_HMGB_SSRP1_UBTF:0.570670695874;NHLH1,2:0.564850258483;CUX2:0.557982038227;XBP1:0.54999033377;NFY{A,B,C}:0.517740374813;EP300:0.49269808294;AR:0.465179628078;TEF:0.443474775471;XCPE1{core}:0.437436778517;POU1F1:0.425967222049;POU5F1:0.419956815812;MED-1{core}:0.414497895782;FOX{F1,F2,J1}:0.399633716232;RXRA_VDR{dimer}:0.351787315319;TLX2:0.342065848208;EBF1:0.318538898921;SREBF1,2:0.260060769096;FOX{D1,D2}:0.257694423942;STAT1,3:0.222207182546;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.220336659627;ESR1:0.201989258738;NFKB1_REL_RELA:0.193506539296;EN1,2:0.185100684385;CDX1,2,4:0.161843886007;NFATC1..3:0.157522998391;PAX6:0.154800279847;TAL1_TCF{3,4,12}:0.133073779514;NR5A1,2:0.122216610621;TFAP4:0.116475330856;LMO2:0.110695601676;IRF1,2:0.0857407124547;MYFfamily:0.0692515991514;MZF1:0.0638019586245;OCT4_SOX2{dimer}:0.0619664122462;FOSL2:0.0596188516436;STAT5{A,B}:0.0498124497592;RORA:0.043093230783;ELK1,4_GABP{A,B1}:0.0394213511159;CRX:0.0384242496707;NFIX:0.0311645808186;ZEB1:0.0291650664598;HNF1A:0.00958541233001;NRF1:0.00141462834536;LEF1_TCF7_TCF7L1,2:-0.00116044012662;MAFB:-0.00957429347741;HLF:-0.0137188642525;GLI1..3:-0.0206008743685;IRF7:-0.033545100646;GCM1,2:-0.0378355098103;FOX{I1,J2}:-0.0402046618728;FOXP3:-0.0489682347928;POU3F1..4:-0.0611251741027;PRRX1,2:-0.0688523071923;CEBPA,B_DDIT3:-0.0969138939413;YY1:-0.108508475664;MEF2{A,B,C,D}:-0.123023161814;POU2F1..3:-0.134417407619;ZNF238:-0.15279727313;SOX17:-0.155944405327;MAZ:-0.159209581226;TBX4,5:-0.16631509561;PAX3,7:-0.178921530831;REST:-0.191036738647;ALX1:-0.196541353889;FOS_FOS{B,L1}_JUN{B,D}:-0.208564807831;SOX5:-0.219083636442;HES1:-0.242456963328;ONECUT1,2:-0.249472095636;PPARG:-0.253094990276;PBX1:-0.259093993759;SOX{8,9,10}:-0.26828572781;MTF1:-0.276043528541;BACH2:-0.330914406245;AHR_ARNT_ARNT2:-0.331789966744;HNF4A_NR2F1,2:-0.360181812183;PATZ1:-0.368328615481;FOXO1,3,4:-0.397223016538;NFE2:-0.413006045511;T:-0.417184949369;STAT2,4,6:-0.436534692187;ZBTB6:-0.4456114754;ATF2:-0.447933936023;RBPJ:-0.478731429987;NKX2-3_NKX2-5:-0.479802525423;NKX2-1,4:-0.48335236151;ESRRA:-0.493530426333;ATF6:-0.500252481305;NR3C1:-0.511132435723;HOX{A6,A7,B6,B7}:-0.521729303032;GTF2I:-0.588692079175;GZF1:-0.589356543624;HMX1:-0.618488841155;GTF2A1,2:-0.64094830583;NFE2L2:-0.671270836569;JUN:-0.67742259678;BPTF:-0.688904142433;MYBL2:-0.754562822072;GFI1:-0.770969232381;SNAI1..3:-0.802392365267;SPZ1:-0.805829752023;HOX{A4,D4}:-0.849711373775;NKX2-2,8:-0.863155167664;CDC5L:-0.8761243839;HOXA9_MEIS1:-0.929407720264;DBP:-0.92993343537;LHX3,4:-0.938027372126;PAX4:-0.939612428155;IKZF2:-0.954538512514;PRDM1:-0.957085475007;SRF:-1.00702099029;TFCP2:-1.01639152856;PDX1:-1.03228862211;ADNP_IRX_SIX_ZHX:-1.04394218809;ZIC1..3:-1.09419151092;RREB1:-1.10321995296;ZNF423:-1.10469993676;HOX{A5,B5}:-1.11565400296;GATA4:-1.13838245099;GFI1B:-1.16287732177;HSF1,2:-1.20151446254;TP53:-1.20773985672;EVI1:-1.22255998637;TEAD1:-1.22732853945;SMAD1..7,9:-1.23614204214;POU6F1:-1.26758847829;TLX1..3_NFIC{dimer}:-1.26920173938;FOXP1:-1.31029605136;AIRE:-1.313951783;FOXD3:-1.31407796105;KLF4:-1.33578776748;NKX3-1:-1.36004419784;ALX4:-1.39536165936;TOPORS:-1.40562238985;ARID5B:-1.44813382829;PITX1..3:-1.47067687785;NR1H4:-1.47527795381;NFE2L1:-1.49225419664;NKX3-2:-1.55135765738;IKZF1:-1.55619055178;NKX6-1,2:-1.58642097857;UFEwm:-1.58988511127;NR6A1:-1.64542316887;HMGA1,2:-1.69604707546;ZNF384:-1.80809707785;FOXM1:-1.84733571926;FOXL1:-1.87354571692;ZBTB16:-2.15184482388;TBP:-2.15310855688;PAX1,9:-2.61663927682 | |top_motifs=MYB:2.37210722674;BREu{core}:2.31506718773;CREB1:2.26572817488;E2F1..5:1.86770770256;FOXN1:1.5739998797;TFDP1:1.30134838639;TFAP2B:1.26415759859;RFX2..5_RFXANK_RFXAP:1.25247743458;TFAP2{A,C}:1.23025495295;PAX5:1.20999880883;ZFP161:1.20058608087;FOXQ1:1.17559665404;EGR1..3:1.16637594272;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.14418970285;PAX8:1.10560630179;ZNF148:1.09071048842;ATF4:1.0877580671;FOXA2:1.08038401114;PAX2:1.06774975715;HAND1,2:1.01411748615;HIF1A:1.00705200959;SPI1:0.963798191383;NANOG:0.931559718004;SP1:0.910303172053;SPIB:0.907425737078;TGIF1:0.876169095122;VSX1,2:0.870388946743;ELF1,2,4:0.860803155327;RXR{A,B,G}:0.801863867365;GATA6:0.792672128486;RUNX1..3:0.79230078145;HIC1:0.78832871328;RFX1:0.778887399117;ZNF143:0.770113672168;MTE{core}:0.678424394276;DMAP1_NCOR{1,2}_SMARC:0.676518145722;ETS1,2:0.641282922914;bHLH_family:0.634335875728;NFIL3:0.621885849959;NANOG{mouse}:0.611925501763;SOX2:0.591039775337;MYOD1:0.589899321227;ATF5_CREB3:0.584771604842;HBP1_HMGB_SSRP1_UBTF:0.570670695874;NHLH1,2:0.564850258483;CUX2:0.557982038227;XBP1:0.54999033377;NFY{A,B,C}:0.517740374813;EP300:0.49269808294;AR:0.465179628078;TEF:0.443474775471;XCPE1{core}:0.437436778517;POU1F1:0.425967222049;POU5F1:0.419956815812;MED-1{core}:0.414497895782;FOX{F1,F2,J1}:0.399633716232;RXRA_VDR{dimer}:0.351787315319;TLX2:0.342065848208;EBF1:0.318538898921;SREBF1,2:0.260060769096;FOX{D1,D2}:0.257694423942;STAT1,3:0.222207182546;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.220336659627;ESR1:0.201989258738;NFKB1_REL_RELA:0.193506539296;EN1,2:0.185100684385;CDX1,2,4:0.161843886007;NFATC1..3:0.157522998391;PAX6:0.154800279847;TAL1_TCF{3,4,12}:0.133073779514;NR5A1,2:0.122216610621;TFAP4:0.116475330856;LMO2:0.110695601676;IRF1,2:0.0857407124547;MYFfamily:0.0692515991514;MZF1:0.0638019586245;OCT4_SOX2{dimer}:0.0619664122462;FOSL2:0.0596188516436;STAT5{A,B}:0.0498124497592;RORA:0.043093230783;ELK1,4_GABP{A,B1}:0.0394213511159;CRX:0.0384242496707;NFIX:0.0311645808186;ZEB1:0.0291650664598;HNF1A:0.00958541233001;NRF1:0.00141462834536;LEF1_TCF7_TCF7L1,2:-0.00116044012662;MAFB:-0.00957429347741;HLF:-0.0137188642525;GLI1..3:-0.0206008743685;IRF7:-0.033545100646;GCM1,2:-0.0378355098103;FOX{I1,J2}:-0.0402046618728;FOXP3:-0.0489682347928;POU3F1..4:-0.0611251741027;PRRX1,2:-0.0688523071923;CEBPA,B_DDIT3:-0.0969138939413;YY1:-0.108508475664;MEF2{A,B,C,D}:-0.123023161814;POU2F1..3:-0.134417407619;ZNF238:-0.15279727313;SOX17:-0.155944405327;MAZ:-0.159209581226;TBX4,5:-0.16631509561;PAX3,7:-0.178921530831;REST:-0.191036738647;ALX1:-0.196541353889;FOS_FOS{B,L1}_JUN{B,D}:-0.208564807831;SOX5:-0.219083636442;HES1:-0.242456963328;ONECUT1,2:-0.249472095636;PPARG:-0.253094990276;PBX1:-0.259093993759;SOX{8,9,10}:-0.26828572781;MTF1:-0.276043528541;BACH2:-0.330914406245;AHR_ARNT_ARNT2:-0.331789966744;HNF4A_NR2F1,2:-0.360181812183;PATZ1:-0.368328615481;FOXO1,3,4:-0.397223016538;NFE2:-0.413006045511;T:-0.417184949369;STAT2,4,6:-0.436534692187;ZBTB6:-0.4456114754;ATF2:-0.447933936023;RBPJ:-0.478731429987;NKX2-3_NKX2-5:-0.479802525423;NKX2-1,4:-0.48335236151;ESRRA:-0.493530426333;ATF6:-0.500252481305;NR3C1:-0.511132435723;HOX{A6,A7,B6,B7}:-0.521729303032;GTF2I:-0.588692079175;GZF1:-0.589356543624;HMX1:-0.618488841155;GTF2A1,2:-0.64094830583;NFE2L2:-0.671270836569;JUN:-0.67742259678;BPTF:-0.688904142433;MYBL2:-0.754562822072;GFI1:-0.770969232381;SNAI1..3:-0.802392365267;SPZ1:-0.805829752023;HOX{A4,D4}:-0.849711373775;NKX2-2,8:-0.863155167664;CDC5L:-0.8761243839;HOXA9_MEIS1:-0.929407720264;DBP:-0.92993343537;LHX3,4:-0.938027372126;PAX4:-0.939612428155;IKZF2:-0.954538512514;PRDM1:-0.957085475007;SRF:-1.00702099029;TFCP2:-1.01639152856;PDX1:-1.03228862211;ADNP_IRX_SIX_ZHX:-1.04394218809;ZIC1..3:-1.09419151092;RREB1:-1.10321995296;ZNF423:-1.10469993676;HOX{A5,B5}:-1.11565400296;GATA4:-1.13838245099;GFI1B:-1.16287732177;HSF1,2:-1.20151446254;TP53:-1.20773985672;EVI1:-1.22255998637;TEAD1:-1.22732853945;SMAD1..7,9:-1.23614204214;POU6F1:-1.26758847829;TLX1..3_NFIC{dimer}:-1.26920173938;FOXP1:-1.31029605136;AIRE:-1.313951783;FOXD3:-1.31407796105;KLF4:-1.33578776748;NKX3-1:-1.36004419784;ALX4:-1.39536165936;TOPORS:-1.40562238985;ARID5B:-1.44813382829;PITX1..3:-1.47067687785;NR1H4:-1.47527795381;NFE2L1:-1.49225419664;NKX3-2:-1.55135765738;IKZF1:-1.55619055178;NKX6-1,2:-1.58642097857;UFEwm:-1.58988511127;NR6A1:-1.64542316887;HMGA1,2:-1.69604707546;ZNF384:-1.80809707785;FOXM1:-1.84733571926;FOXL1:-1.87354571692;ZBTB16:-2.15184482388;TBP:-2.15310855688;PAX1,9:-2.61663927682 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12131-128D7;search_select_hide=table117:FF:12131-128D7 | |||
}} | }} | ||
Latest revision as of 18:31, 4 June 2020
| Name: | granulocyte macrophage progenitor, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12519 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12519
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12519
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0246 |
| 10 | 10 | 0.552 |
| 100 | 100 | 0.194 |
| 101 | 101 | 0.797 |
| 102 | 102 | 0.831 |
| 103 | 103 | 0.797 |
| 104 | 104 | 0.941 |
| 105 | 105 | 0.981 |
| 106 | 106 | 0.551 |
| 107 | 107 | 0.246 |
| 108 | 108 | 0.283 |
| 109 | 109 | 0.359 |
| 11 | 11 | 0.111 |
| 110 | 110 | 0.0773 |
| 111 | 111 | 0.194 |
| 112 | 112 | 0.644 |
| 113 | 113 | 0.508 |
| 114 | 114 | 0.172 |
| 115 | 115 | 0.279 |
| 116 | 116 | 0.134 |
| 117 | 117 | 0.588 |
| 118 | 118 | 0.687 |
| 119 | 119 | 0.0508 |
| 12 | 12 | 0.745 |
| 120 | 120 | 0.308 |
| 121 | 121 | 0.954 |
| 122 | 122 | 0.617 |
| 123 | 123 | 0.0652 |
| 124 | 124 | 0.341 |
| 125 | 125 | 0.178 |
| 126 | 126 | 0.415 |
| 127 | 127 | 0.21 |
| 128 | 128 | 0.939 |
| 129 | 129 | 0.46 |
| 13 | 13 | 0.319 |
| 130 | 130 | 0.542 |
| 131 | 131 | 0.0654 |
| 132 | 132 | 0.222 |
| 133 | 133 | 0.636 |
| 134 | 134 | 0.245 |
| 135 | 135 | 0.303 |
| 136 | 136 | 0.319 |
| 137 | 137 | 0.0137 |
| 138 | 138 | 0.605 |
| 139 | 139 | 0.43 |
| 14 | 14 | 0.983 |
| 140 | 140 | 0.929 |
| 141 | 141 | 0.738 |
| 142 | 142 | 0.724 |
| 143 | 143 | 0.951 |
| 144 | 144 | 0.474 |
| 145 | 145 | 0.145 |
| 146 | 146 | 0.767 |
| 147 | 147 | 0.146 |
| 148 | 148 | 0.0912 |
| 149 | 149 | 0.252 |
| 15 | 15 | 0.857 |
| 150 | 150 | 0.74 |
| 151 | 151 | 0.618 |
| 152 | 152 | 0.765 |
| 153 | 153 | 0.184 |
| 154 | 154 | 0.452 |
| 155 | 155 | 0.0172 |
| 156 | 156 | 0.567 |
| 157 | 157 | 0.3 |
| 158 | 158 | 0.251 |
| 159 | 159 | 0.664 |
| 16 | 16 | 0.0359 |
| 160 | 160 | 0.0865 |
| 161 | 161 | 0.821 |
| 162 | 162 | 0.221 |
| 163 | 163 | 0.862 |
| 164 | 164 | 0.616 |
| 165 | 165 | 0.44 |
| 166 | 166 | 0.815 |
| 167 | 167 | 0.43 |
| 168 | 168 | 0.395 |
| 169 | 169 | 0.00503 |
| 17 | 17 | 0.213 |
| 18 | 18 | 0.357 |
| 19 | 19 | 0.0482 |
| 2 | 2 | 0.762 |
| 20 | 20 | 0.984 |
| 21 | 21 | 0.169 |
| 22 | 22 | 0.891 |
| 23 | 23 | 0.173 |
| 24 | 24 | 0.49 |
| 25 | 25 | 0.923 |
| 26 | 26 | 0.862 |
| 27 | 27 | 0.876 |
| 28 | 28 | 0.812 |
| 29 | 29 | 0.913 |
| 3 | 3 | 0.0727 |
| 30 | 30 | 0.963 |
| 31 | 31 | 0.523 |
| 32 | 32 | 1.95615e-4 |
| 33 | 33 | 0.354 |
| 34 | 34 | 0.615 |
| 35 | 35 | 0.33 |
| 36 | 36 | 0.345 |
| 37 | 37 | 0.212 |
| 38 | 38 | 0.454 |
| 39 | 39 | 0.329 |
| 4 | 4 | 0.695 |
| 40 | 40 | 0.234 |
| 41 | 41 | 0.574 |
| 42 | 42 | 0.411 |
| 43 | 43 | 0.126 |
| 44 | 44 | 0.0163 |
| 45 | 45 | 0.761 |
| 46 | 46 | 0.0955 |
| 47 | 47 | 0.144 |
| 48 | 48 | 0.214 |
| 49 | 49 | 0.356 |
| 5 | 5 | 0.457 |
| 50 | 50 | 0.832 |
| 51 | 51 | 0.649 |
| 52 | 52 | 0.963 |
| 53 | 53 | 0.878 |
| 54 | 54 | 0.806 |
| 55 | 55 | 0.533 |
| 56 | 56 | 0.304 |
| 57 | 57 | 0.155 |
| 58 | 58 | 0.573 |
| 59 | 59 | 0.284 |
| 6 | 6 | 0.288 |
| 60 | 60 | 0.718 |
| 61 | 61 | 0.689 |
| 62 | 62 | 0.449 |
| 63 | 63 | 0.1 |
| 64 | 64 | 0.192 |
| 65 | 65 | 0.0957 |
| 66 | 66 | 0.547 |
| 67 | 67 | 0.6 |
| 68 | 68 | 0.581 |
| 69 | 69 | 0.167 |
| 7 | 7 | 0.838 |
| 70 | 70 | 0.0176 |
| 71 | 71 | 0.0898 |
| 72 | 72 | 0.898 |
| 73 | 73 | 0.451 |
| 74 | 74 | 0.696 |
| 75 | 75 | 0.472 |
| 76 | 76 | 0.491 |
| 77 | 77 | 0.062 |
| 78 | 78 | 0.172 |
| 79 | 79 | 0.049 |
| 8 | 8 | 0.049 |
| 80 | 80 | 0.265 |
| 81 | 81 | 0.274 |
| 82 | 82 | 0.0469 |
| 83 | 83 | 0.524 |
| 84 | 84 | 0.979 |
| 85 | 85 | 0.0885 |
| 86 | 86 | 0.742 |
| 87 | 87 | 0.122 |
| 88 | 88 | 0.12 |
| 89 | 89 | 0.0135 |
| 9 | 9 | 0.723 |
| 90 | 90 | 0.658 |
| 91 | 91 | 0.344 |
| 92 | 92 | 0.0129 |
| 93 | 93 | 0.878 |
| 94 | 94 | 0.397 |
| 95 | 95 | 0.925 |
| 96 | 96 | 0.342 |
| 97 | 97 | 0.892 |
| 98 | 98 | 0.395 |
| 99 | 99 | 0.0305 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12519
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000070 granulocyte macrophage progenitor cell sample
FF:0000210 human sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002032 (hematopoietic oligopotent progenitor cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000557 (granulocyte monocyte progenitor cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002371 (bone marrow)
0001474 (bone element)
0000479 (tissue)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004765 (skeletal element)
0010317 (germ layer / neural crest derived structure)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0002390 (hematopoietic system)
0002193 (hemolymphoid system)
0002405 (immune system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000070 (granulocyte macrophage progenitor cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
