FFCP PHASE1:Hg19::chr12:58148842..58148929,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=92979 | |EntrezGene=92979 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25139 | |HGNC=25139 | ||
|TSSclassifier=strong | |||
|UniProt=Q86YJ5,Q8N9T1 | |UniProt=Q86YJ5,Q8N9T1 | ||
|association_with_transcript=0bp_to_ENST00000266643,NM_138396,uc001spx.1_5end | |association_with_transcript=0bp_to_ENST00000266643,NM_138396,uc001spx.1_5end | ||
|cluster_id=chr12:58148842..58148929,+ | |||
|description=CAGE_peak_1_at_MARCH9_5end | |description=CAGE_peak_1_at_MARCH9_5end | ||
|id=chr12:58148842..58148929,+ | |id=chr12:58148842..58148929,+ | ||
|ontology_enrichment_celltype=CL:0000542!1.67e-22!53;CL:0000051!1.67e-22!53;CL:0000838!5.51e-22!52;CL:0000084!1.36e-12!25;CL:0000827!1.36e-12!25;CL:0000791!3.51e-10!18;CL:0000789!3.51e-10!18;CL:0002420!3.51e-10!18;CL:0002419!3.51e-10!18;CL:0000790!3.51e-10!18;CL:0000945!2.55e-09!24;CL:0000826!2.55e-09!24;CL:0000236!3.63e-08!14 | |ontology_enrichment_celltype=CL:0000542!1.67e-22!53;CL:0000051!1.67e-22!53;CL:0000838!5.51e-22!52;CL:0000084!1.36e-12!25;CL:0000827!1.36e-12!25;CL:0000791!3.51e-10!18;CL:0000789!3.51e-10!18;CL:0002420!3.51e-10!18;CL:0002419!3.51e-10!18;CL:0000790!3.51e-10!18;CL:0000945!2.55e-09!24;CL:0000826!2.55e-09!24;CL:0000236!3.63e-08!14 | ||
|ontology_enrichment_celltype_v019=CL:0000542;1.90e-13;53!CL:0000084;1.23e-12;25!CL:0000791;3.51e-10;18!CL:0000789;3.51e-10;18!CL:0002419;3.51e-10;18!CL:0000945;1.92e-09;24!CL:0000236;7.53e-08;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,1.61e-22,53;CL:0000051,1.61e-22,53;CL:0000838,5.31e-22,52;CL:0000084,1.34e-12,25;CL:0000827,1.34e-12,25;CL:0000791,3.46e-10,18;CL:0000789,3.46e-10,18;CL:0002420,3.46e-10,18;CL:0002419,3.46e-10,18;CL:0000790,3.46e-10,18;CL:0000945,2.51e-09,24;CL:0000826,2.51e-09,24;CL:0000236,3.59e-08,14 | |||
|ontology_enrichment_development_v019=CL:0000051;1.90e-13;53!CL:0000790;3.51e-10;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.49e-13!115;UBERON:0000955!5.24e-08!69;UBERON:0006238!5.24e-08!69;UBERON:0001017!5.71e-08!82;UBERON:0005743!1.83e-07!86;UBERON:0000073!1.90e-07!94;UBERON:0001016!1.90e-07!94;UBERON:0001049!4.05e-07!57;UBERON:0005068!4.05e-07!57;UBERON:0006241!4.05e-07!57;UBERON:0007135!4.05e-07!57;UBERON:0002780!9.25e-07!41;UBERON:0001890!9.25e-07!41;UBERON:0006240!9.25e-07!41 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,5.30e-13,114;UBERON:0011216,1.18e-08,223;UBERON:0000955,4.68e-08,68;UBERON:0006238,4.68e-08,68;UBERON:0001017,5.24e-08,81;UBERON:0001016,6.04e-08,89;UBERON:0000073,2.42e-07,53;UBERON:0002616,2.42e-07,53;UBERON:0001049,3.57e-07,56;UBERON:0005068,3.57e-07,56;UBERON:0006241,3.57e-07,56;UBERON:0007135,3.57e-07,56;UBERON:0002780,9.17e-07,41;UBERON:0001890,9.17e-07,41;UBERON:0003080,9.17e-07,41;UBERON:0006240,9.17e-07,41 | |||
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| ||
|short_description=p1@MARCH9 | |short_description=p1@MARCH9 | ||
}} | }} |
Latest revision as of 16:36, 19 September 2015
Short description: | p1@MARCH9 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_MARCH9_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000266643, NM_138396, uc001spx.1_5end |
EntrezGene: | MARCH9 |
HGNC: | 25139 |
UniProt: | Q86YJ5Q8N9T1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 1.61e-22 | 53 |
common lymphoid progenitor | 1.61e-22 | 53 |
lymphoid lineage restricted progenitor cell | 5.31e-22 | 52 |
T cell | 1.34e-12 | 25 |
pro-T cell | 1.34e-12 | 25 |
mature alpha-beta T cell | 3.46e-10 | 18 |
alpha-beta T cell | 3.46e-10 | 18 |
immature T cell | 3.46e-10 | 18 |
mature T cell | 3.46e-10 | 18 |
immature alpha-beta T cell | 3.46e-10 | 18 |
lymphocyte of B lineage | 2.51e-09 | 24 |
pro-B cell | 2.51e-09 | 24 |
B cell | 3.59e-08 | 14 |
Ontology term | p-value | n |
---|---|---|
adult organism | 5.30e-13 | 114 |
organ system subdivision | 1.18e-08 | 223 |
brain | 4.68e-08 | 68 |
future brain | 4.68e-08 | 68 |
central nervous system | 5.24e-08 | 81 |
nervous system | 6.04e-08 | 89 |
regional part of nervous system | 2.42e-07 | 53 |
regional part of brain | 2.42e-07 | 53 |
neural tube | 3.57e-07 | 56 |
neural rod | 3.57e-07 | 56 |
future spinal cord | 3.57e-07 | 56 |
neural keel | 3.57e-07 | 56 |
regional part of forebrain | 9.17e-07 | 41 |
forebrain | 9.17e-07 | 41 |
anterior neural tube | 9.17e-07 | 41 |
future forebrain | 9.17e-07 | 41 |