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FFCP PHASE1:Mm9::chr3:138738273..138738283,-: Difference between revisions

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{{FFCP
{{FFCP
|DHSsupport=NA
|DPIdataset=NA
|EntrezGene=229877
|EntrezGene=229877
|HGNC=
|HGNC=
|MCL_coexpression_id=1
|TSSclassifier=NA
|UniProt=E9Q6Q4,E9Q912,Q3TPS9,Q3TA69,Q3TU36,Q8BKH0,Q3TYN8
|UniProt=E9Q6Q4,E9Q912,Q3TPS9,Q3TA69,Q3TU36,Q8BKH0,Q3TYN8
|association_with_transcript=-110bp_to_ENSMUST00000029796,ENSMUST00000098574,NM_001040690,NM_145544,uc008rnr.1,uc008rns.1,uc008rnt.1,uc008rnu.1,uc008rnv.1,uc008rnw.1,uc008rnx.1_5end
|association_with_transcript=-110bp_to_ENSMUST00000029796,ENSMUST00000098574,NM_001040690,NM_145544,uc008rnr.1,uc008rns.1,uc008rnt.1,uc008rnu.1,uc008rnv.1,uc008rnw.1,uc008rnx.1_5end
|cluster_id=chr3:138738273..138738283,-
|description=CAGE_peak_4_at_Rap1gds1_5end
|description=CAGE_peak_4_at_Rap1gds1_5end
|id=chr3:138738273..138738283,-
|id=chr3:138738273..138738283,-
|ontology_enrichment_celltype=
|ontology_enrichment_celltype=
|ontology_enrichment_celltype_v019_2=CL:0000117,4.65e-07,23;CL:0000337,4.65e-07,23
|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_disease_v019_2=
|ontology_enrichment_uberon=UBERON:0001049!2.38e-12!52;UBERON:0005068!2.38e-12!52;UBERON:0006241!2.38e-12!52;UBERON:0007135!2.38e-12!52;UBERON:0007811!2.80e-12!86;UBERON:0000153!3.24e-12!94;UBERON:0000955!1.48e-11!50;UBERON:0006238!1.48e-11!50;UBERON:0002616!5.91e-11!49;UBERON:0001017!3.52e-10!73;UBERON:0005743!3.52e-10!73;UBERON:0000033!4.04e-10!63;UBERON:0000073!1.25e-09!75;UBERON:0001016!1.25e-09!75;UBERON:0002346!2.21e-09!71;UBERON:0003075!2.21e-09!71;UBERON:0007284!2.21e-09!71;UBERON:0002020!9.88e-09!34;UBERON:0003056!4.53e-08!49;UBERON:0003080!1.33e-07!40;UBERON:0004121!2.26e-07!102;UBERON:0000924!2.26e-07!102;UBERON:0006601!2.26e-07!102;UBERON:0002021!3.77e-07!10;UBERON:0000411!3.77e-07!10;UBERON:0001950!3.77e-07!10;UBERON:0002780!4.32e-07!39;UBERON:0001890!4.32e-07!39;UBERON:0006240!4.32e-07!39
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.83e-20,54;UBERON:0001049,1.57e-18,52;UBERON:0005068,1.57e-18,52;UBERON:0006241,1.57e-18,52;UBERON:0007135,1.57e-18,52;UBERON:0001017,4.46e-17,73;UBERON:0001016,2.94e-16,75;UBERON:0002346,7.69e-15,64;UBERON:0003075,7.69e-15,64;UBERON:0007284,7.69e-15,64;UBERON:0000955,1.99e-14,47;UBERON:0006238,1.99e-14,47;UBERON:0002020,2.08e-14,34;UBERON:0002616,1.81e-13,46;UBERON:0010371,1.42e-11,73;UBERON:0004121,1.50e-11,95;UBERON:0000924,1.50e-11,95;UBERON:0006601,1.50e-11,95;UBERON:0002021,1.86e-11,10;UBERON:0000411,1.86e-11,10;UBERON:0001950,1.86e-11,10;UBERON:0003076,4.33e-11,12;UBERON:0003057,4.33e-11,12;UBERON:0003528,2.78e-10,29;UBERON:0002791,2.78e-10,29;UBERON:0001893,2.78e-10,29;UBERON:0003080,6.83e-10,40;UBERON:0002780,4.49e-09,39;UBERON:0001890,4.49e-09,39;UBERON:0006240,4.49e-09,39;UBERON:0003056,2.44e-08,49;UBERON:0010314,4.17e-08,92;UBERON:0002619,7.19e-08,17;UBERON:0002240,2.97e-07,6;UBERON:0005174,2.97e-07,6;UBERON:0001137,2.97e-07,6;UBERON:0000956,6.19e-07,21;UBERON:0001869,6.19e-07,21;UBERON:0000203,6.19e-07,21
|phase1_expression=0.320297694209588,0.348975407639361,0,0,0,0,0,1.42035655785734,0.84473233291,0.70219357896598,0,0.478632953972018,1.19840510951844,0.34968160967599,0,0.809901069559304,0,0.788655413395594,2.87940310572051,0.84877930359606,0.595303031057488,0.595745707205312,1.04479915655574,0.159992422793407,0,0,0,0,0.190023419456374,0,0.221730510655305,1.27006134691926,1.23012957516914,0,0,0,0.204169356262369,0.837063261473815,0,0.523523743973798,0.588231488031014,1.36609096991689,1.45653105909346,0.125896817975577,0.202753862439029,0.183546752161682,2.34717403304412,0,1.09843091367236,0.388859798148567,0.279972843250725,0,1.17447824240415,1.45072428402269,3.02484419228218,0,0,0,1.01158230429799,0.528990979272033,1.26766280701236,0.338844532069132,0,0.449949858640699,0,0,0.299600110518405,0.384218305321555,0.829516898467821,0.540023753326763,0,3.14216082844184,1.98781686856452,0.367472397644862,0.0958454710182364,0,4.40463523997555,3.06449611404451,2.91852413186863,1.58263545276233,0.365950574409639,1.04182674111352,1.3959149950069,1.12552522006336,1.22238598221448,1.47314292736834,2.70506193518296,2.23679334990361,0.454357159999104,0.151143120213571,0.579728977403356,0,0,0,0,0,0,0.170430322578058,0.259786004602869,0,0.422530259330042,1.28326477414318,0,0,0,0,1.01104889002957,0.22836775943812,0.776813650941515,0.445326417194474,1.38788261412909,0.304465478312141,0.230615497256059,0.301445281105245,0.352766121407114,0,0.247194967734374,0.289198713839823,0,0.323533699894818,0.662524555381181,1.45462575940567,0,2.63502717310392,2.30391377494801,0.255457055208591,0.718890747035522,1.19980546198682,0.381210681219194,4.34392854273986,1.83000241127451,1.00523481690292,2.78118912307642,3.3243009452943,5.40248915854856,2.92034273521964,1.2220723662038,0.746441823660558,0,0.631325567659422,1.43132487258974,0.919608417733892,0.360124259610698,0.90422890701429,0.544291993210623,1.15302348256365,0.843315521037559,0.258703370739016,0.862271971731369,0,1.05570674498369,0.219195732427575,0.556094498451196,0.696504333044333,1.02891068203972,0.398068533636986,1.40442637462647,0.257347907114715,0.284163499395593,1.03562886267751,0.938104239924385,0.180062061461015,0.946978942340841,0.787056926989615,0.617068451549513,0.232533944750408,0.268273401399619,0.467061369468678,0.658239399653922,0.492502392237286,0.486412857275134,0.877199924551994,0.878200461164203,0,1.68231958851302,0.514523061896422,0,0,0.639864751605702,0.232236671860439,0.515469845288373,0.403367049246685,0.667134131534611,0.570676878337677,0.474529061544512,0,0.251335208800269,0.397912944082302,0.38992817423824,0.898819408654221,0,0.199141273254367,1.13800740571849,0.685491075658373,2.25415471346161,0.407302655690628,0.387904974335251,0.631222379012867,0.632365371242573,0.590440591918409,0.156998727841375,0.246794327843601,0.296452627087149,0.333690211432188,0.393117990226406,0.224862112384854,0.405720242777006,0.241177159752417,0,0.287696137450811,0.486405680325106,0.549122826376163,2.87536413054709,0,0.936113019343682,0,0.179397413521912,0,0,0.568474235311454,0.325929952884052,0.509235257325564,1.40814148973101,1.50755631697634,0.952174563544055,0.585400943573396,0.472905432318573,0.8858587585951,0.956728611944923,0.491589944147214,1.20879487306127,0.289298117163023,0,0,0.983528546038072,0,4.33486592967038,4.80567915028033,0.163934945376675,0.504941854408746,0,0,0.215423397732799,0.238968797952552,1.33679204449436,0,0.404810701674894,0.292255857911312,0.790575555893047,5.78378369559253,0.141940085208269,0.890328018336276,0.651547837414304,0.164970122972535,0,0.485561272309963,0.302323556964751,0.188605079755898,0,0,0,1.09060118843252,0.712994756769443,0,0,1.03135543248187,0.680879211507576,0.900305470156551,0.905510786479282,0.428674070063185,1.06404140185364,0.178368817602071,0.822745103010605,0.304464949114599,0,0.21183207086382,0,0.16488625294148,0.484393280087717,0.542816324353403,0.716234064018819,0.492422699235184,0.291480836629851,3.33765543618917,0.341741761595705,1.23832120777933,0.555583582109135,0,0.683471138605126,0.228778173206523,1.01987057996313,0.69975726161829,1.93479963326193,0,0.632671987162271,0.203319467126849,0.324016022465404,0.209088296014469,0.218362563746178,0.134864346384821,0.330613822901344,0.26175594198403,0.129614973291793,0,0,0.448549638131936,0.330916980914195,0.583353565032143,0.516639293910924,0.337912250981556,0.117357238645754,0.911430693907651,0.838874755405687,0.483168241652012,0.576060012515731,0.948033361884535,0.202725215290164,0.718976700153791,0.77952493786677,1.9692936523423,1.98681354781265,1.44234539423963,0.886137163047463,1.41353029927407,1.06689529317,1.51239277705261,0.779663045918019,1.44317762460494,1.28564592399726,0,0.221985953374065,0.0897138566094757,0,0,0.375364950902364,0.36630324853453,0.643105137237198,0,1.12950368523413,1.38097570952153,3.43737308063638,3.09335728218638,5.48066015816514,3.7769694869485,3.37511250115903,3.15224842256954,4.53142408984205,2.5888015587591,0.726511433089237,1.1970746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|phase1_expression=0.320297694209588,0.348975407639361,0,0,0,0,0,1.42035655785734,0.84473233291,0.70219357896598,0,0.478632953972018,1.19840510951844,0.34968160967599,0,0.809901069559304,0,0.788655413395594,2.87940310572051,0.84877930359606,0.595303031057488,0.595745707205312,1.04479915655574,0.159992422793407,0,0,0,0,0.190023419456374,0,0.221730510655305,1.27006134691926,1.23012957516914,0,0,0,0.204169356262369,0.837063261473815,0,0.523523743973798,0.588231488031014,1.36609096991689,1.45653105909346,0.125896817975577,0.202753862439029,0.183546752161682,2.34717403304412,0,1.09843091367236,0.388859798148567,0.279972843250725,0,1.17447824240415,1.45072428402269,3.02484419228218,0,0,0,1.01158230429799,0.528990979272033,1.26766280701236,0.338844532069132,0,0.449949858640699,0,0,0.299600110518405,0.384218305321555,0.829516898467821,0.540023753326763,0,3.14216082844184,1.98781686856452,0.367472397644862,0.0958454710182364,0,4.40463523997555,3.06449611404451,2.91852413186863,1.58263545276233,0.365950574409639,1.04182674111352,1.3959149950069,1.12552522006336,1.22238598221448,1.47314292736834,2.70506193518296,2.23679334990361,0.454357159999104,0.151143120213571,0.579728977403356,0,0,0,0,0,0,0.170430322578058,0.259786004602869,0,0.422530259330042,1.28326477414318,0,0,0,0,1.01104889002957,0.22836775943812,0.776813650941515,0.445326417194474,1.38788261412909,0.304465478312141,0.230615497256059,0.301445281105245,0.352766121407114,0,0.247194967734374,0.289198713839823,0,0.323533699894818,0.662524555381181,1.45462575940567,0,2.63502717310392,2.30391377494801,0.255457055208591,0.718890747035522,1.19980546198682,0.381210681219194,4.34392854273986,1.83000241127451,1.00523481690292,2.78118912307642,3.3243009452943,5.40248915854856,2.92034273521964,1.2220723662038,0.746441823660558,0,0.631325567659422,1.43132487258974,0.919608417733892,0.360124259610698,0.90422890701429,0.544291993210623,1.15302348256365,0.843315521037559,0.258703370739016,0.862271971731369,0,1.05570674498369,0.219195732427575,0.556094498451196,0.696504333044333,1.02891068203972,0.398068533636986,1.40442637462647,0.257347907114715,0.284163499395593,1.03562886267751,0.938104239924385,0.180062061461015,0.946978942340841,0.787056926989615,0.617068451549513,0.232533944750408,0.268273401399619,0.467061369468678,0.658239399653922,0.492502392237286,0.486412857275134,0.877199924551994,0.878200461164203,0,1.68231958851302,0.514523061896422,0,0,0.639864751605702,0.232236671860439,0.515469845288373,0.403367049246685,0.667134131534611,0.570676878337677,0.474529061544512,0,0.251335208800269,0.397912944082302,0.38992817423824,0.898819408654221,0,0.199141273254367,1.13800740571849,0.685491075658373,2.25415471346161,0.407302655690628,0.387904974335251,0.631222379012867,0.632365371242573,0.590440591918409,0.156998727841375,0.246794327843601,0.296452627087149,0.333690211432188,0.393117990226406,0.224862112384854,0.405720242777006,0.241177159752417,0,0.287696137450811,0.486405680325106,0.549122826376163,2.87536413054709,0,0.936113019343682,0,0.179397413521912,0,0,0.568474235311454,0.325929952884052,0.509235257325564,1.40814148973101,1.50755631697634,0.952174563544055,0.585400943573396,0.472905432318573,0.8858587585951,0.956728611944923,0.491589944147214,1.20879487306127,0.289298117163023,0,0,0.983528546038072,0,4.33486592967038,4.80567915028033,0.163934945376675,0.504941854408746,0,0,0.215423397732799,0.238968797952552,1.33679204449436,0,0.404810701674894,0.292255857911312,0.790575555893047,5.78378369559253,0.141940085208269,0.890328018336276,0.651547837414304,0.164970122972535,0,0.485561272309963,0.302323556964751,0.188605079755898,0,0,0,1.09060118843252,0.712994756769443,0,0,1.03135543248187,0.680879211507576,0.900305470156551,0.905510786479282,0.428674070063185,1.06404140185364,0.178368817602071,0.822745103010605,0.304464949114599,0,0.21183207086382,0,0.16488625294148,0.484393280087717,0.542816324353403,0.716234064018819,0.492422699235184,0.291480836629851,3.33765543618917,0.341741761595705,1.23832120777933,0.555583582109135,0,0.683471138605126,0.228778173206523,1.01987057996313,0.69975726161829,1.93479963326193,0,0.632671987162271,0.203319467126849,0.324016022465404,0.209088296014469,0.218362563746178,0.134864346384821,0.330613822901344,0.26175594198403,0.129614973291793,0,0,0.448549638131936,0.330916980914195,0.583353565032143,0.516639293910924,0.337912250981556,0.117357238645754,0.911430693907651,0.838874755405687,0.483168241652012,0.576060012515731,0.948033361884535,0.202725215290164,0.718976700153791,0.77952493786677,1.9692936523423,1.98681354781265,1.44234539423963,0.886137163047463,1.41353029927407,1.06689529317,1.51239277705261,0.779663045918019,1.44317762460494,1.28564592399726,0,0.221985953374065,0.0897138566094757,0,0,0.375364950902364,0.36630324853453,0.643105137237198,0,1.12950368523413,1.38097570952153,3.43737308063638,3.09335728218638,5.48066015816514,3.7769694869485,3.37511250115903,3.15224842256954,4.53142408984205,2.5888015587591,0.726511433089237,1.1970746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|short_description=p4@Rap1gds1
|short_description=p4@Rap1gds1
}}
}}

Latest revision as of 17:04, 1 October 2015

Short description:p4@Rap1gds1
Species:Mouse (Mus musculus)
DPI dataset: NA
TSS-like-by-RIKEN-classifier(Yes/No): NA
DHS support(Yes/No): NA
Description: CAGE_peak_4_at_Rap1gds1_5end
Coexpression cluster:MCL_coexpression_mm9:1
Association with transcript: -110bp_to_ENSMUST00000029796, ENSMUST00000098574, NM_001040690, NM_145544, uc008rnr.1, uc008rns.1, uc008rnt.1, uc008rnu.1, uc008rnv.1, uc008rnw.1, uc008rnx.1_5end
EntrezGene:Rap1gds1
Link to Zenbu:ZENBU


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CAGE Expression

Sample

p4@Rap1gds1

Atoh1+ Inner ear hair cells - organ of corti, pool1.CNhs12533.12158-128G70.32
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13242.11850-124I50.35
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13233.11851-124I60.00
CD326+ enterocyte, pool1.CNhs13542.11848-124I30.00
CD326+ enterocyte, pool2.CNhs13197.11849-124I40.00
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13236.11852-124I70.00
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13210.11853-124I80.00
CD4+CD25+ regulatory T cells, pool2 (Balb_cAJcl).CNhs13221.11818-124E91.42
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool1 (C57BL_6J).CNhs13219.11816-124E70.84
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool2 (Balb_cAJcl).CNhs13226.11820-124F20.70
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool1 (C57BL_6J).CNhs13218.11815-124E60.00
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool2 (Balb_cAJcl).CNhs13225.11819-124F10.48
CD4+CD25-CD44- naive conventional T cells, pool1 (C57BL_6J).CNhs13217.11813-124E41.20
CD4+CD25-CD44- naive conventional T cells, pool2 (Balb_cAJcl).CNhs13220.11817-124E80.35
CD41+ megakaryocyte cancer, donor1.CNhs13079.11774-124A10.00
CD41+ megakaryocyte cancer, donor2.CNhs13213.11776-124A30.81
CD41+ megakaryocyte cancer, donor3.CNhs13506.11778-124A50.00
CD41+ megakaryocyte control, donor1.CNhs13212.11775-124A20.79
CD41+ megakaryocyte control, donor2.CNhs13214.11777-124A42.88
CD41+ megakaryocyte control, donor3.CNhs13201.11779-124A60.85
Clontech Mouse Universal Reference Total RNA, pool1.CNhs10609.10001-101A30.60
EBF KO HPCs induced to T cell, 00hr00min, biol_rep1.CNhs11058.12972-138H20.60
EBF KO HPCs induced to T cell, 00hr00min, biol_rep2.CNhs12980.12988-138I91.04
Follicle Associated Epithelium, pool2.CNhs13211.10262-104D10.16
Follicle Associated Epithelium, pool3.CNhs13200.10263-104D20.00
GP2+ M cell, pool1.CNhs13228.11845-124H90.00
GP2+ M cell, pool2.CNhs13231.11846-124I10.00
GP2+ M cell, pool3.CNhs13240.11847-124I20.00
Ileum epithelium, pool1.CNhs13199.10252-104B90.19
Ileum epithelium, pool2.CNhs13232.10253-104C10.00
Ileum epithelium, treated with RANKL, day03, pool3.CNhs13234.10260-104C80.22
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep1.CNhs12449.13063-139I31.27
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep2.CNhs12668.13129-140G61.23
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep3.CNhs12770.13195-141E90.00
Lgr5 positive intestinal stem cells, pool1.CNhs12555.12228-129F50.00
Lgr5 positive intestinal stem cells, pool2.CNhs12556.12229-129F60.00
Lgr5 positive intestinal stem cells, pool3.CNhs12557.12230-129F70.20
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor1 (10,11,12 3LL).CNhs12539.12159-128G80.84
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor2 (0127 3LL).CNhs12198.12161-128H10.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor3 (0128 3LL).CNhs12542.12163-128H30.52
MC1+Gr1+ myeloid-derived suppressor cells control, donor1 (4,5,6PBS).CNhs12540.12160-128G90.59
MC1+Gr1+ myeloid-derived suppressor cells control, donor2 (0127 PBS).CNhs12541.12162-128H21.37
MC1+Gr1+ myeloid-derived suppressor cells control, donor3 (0128 PBS).CNhs12543.12164-128H41.46
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep1.CNhs11055.11484-119D80.13
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep2.CNhs11056.11485-119D90.20
Mouse Aortic Smooth Muscle cells, donor1.CNhs11297.11299-117B30.18
Mouse Astrocytes - cerebellar, donor1.CNhs13077.11708-123B72.35
Mouse Astrocytes - cerebellar, donor2.CNhs12076.11550-120C20.00
Mouse Astrocytes - hippocampus, donor1.CNhs12129.11709-123B81.10
Mouse Astrocytes - hippocampus, donor2.CNhs12077.11551-120C30.39
Mouse Astrocytes, donor2.CNhs12078.11552-120C40.28
Mouse Astrocytes, donor3.CNhs12107.11633-122C40.00
Mouse CD19+ B Cells, donor1.CNhs13531.11856-125A21.17
Mouse CD4+ T Cells, donor1.CNhs13509.11854-124I91.45
Mouse CD8+ T Cells, donor1.CNhs13511.11855-125A13.02
Mouse Cardiac Myocytes, donor1.CNhs12355.11711-123C10.00
Mouse Cardiac Myocytes, donor2.CNhs12356.11729-123E10.00
Mouse Cardiac Myocytes, donor3.CNhs12353.11634-122C50.00
Mouse Granule cells, donor1.CNhs12131.11713-123C31.01
Mouse Granule cells, donor2.CNhs12357.11731-123E30.53
Mouse Granule cells, donor3.CNhs12108.11636-122C71.27
Mouse Meningeal cells, donor1.CNhs12132.11716-123C60.34
Mouse Meningeal cells, donor3.CNhs12109.11639-122D10.00
Mouse Mesenchymal stem cells - bone marrow derived, donor1.CNhs12628.11717-123C70.45
Mouse Mesenchymal stem cells - bone marrow derived, donor2.CNhs12633.11735-123E70.00
Mouse Mesenchymal stem cells - bone marrow derived, donor3.CNhs12616.11640-122D20.00
Mouse Microglia, donor1.CNhs12629.11718-123C80.30
Mouse Microglia, donor2.CNhs12634.11736-123E80.38
Mouse Neurons - cortical, donor1.CNhs12025.11724-123D50.83
Mouse Neurons - cortical, donor2.CNhs11947.11742-123F50.54
Mouse Neurons - cortical, donor3.CNhs12112.11647-122D90.00
Mouse Neurons - dorsal spinal cord, donor2.CNhs12635.11738-123F13.14
Mouse Neurons - dorsal spinal cord, donor3.CNhs12618.11643-122D51.99
Mouse Neurons - hippocampal, donor1.CNhs12133.11721-123D20.37
Mouse Neurons - hippocampal, donor2.CNhs12359.11739-123F20.10
Mouse Neurons - hippocampal, donor3.CNhs12110.11644-122D60.00
Mouse Neurons - raphe, donor1.CNhs12631.11722-123D34.40
Mouse Neurons - raphe, donor2.CNhs12636.11740-123F33.06
Mouse Neurons - raphe, donor3.CNhs12619.11645-122D72.92
Mouse Neurons - striatal, donor1.CNhs12134.11723-123D41.58
Mouse Neurons - striatal, donor2.CNhs12360.11741-123F40.37
Mouse Neurons - striatal, donor3.CNhs12111.11646-122D81.04
Mouse Neurons - substantia nigra, donor4, tech_rep1.CNhs12612.11489-119E41.40
Mouse Neurons - substantia nigra, donor5.CNhs12614.11490-119E51.13
Mouse Neurons - substantia nigra, donor6.CNhs12643.11770-123I61.22
Mouse Neurons - ventral spinal cord, donor1.CNhs12632.11725-123D61.47
Mouse Neurons - ventral spinal cord, donor2.CNhs12638.11743-123F62.71
Mouse Neurons - ventral spinal cord, donor3.CNhs12113.11648-122E12.24
Mouse Schwann, donor1.CNhs12507.11728-123D90.45
Mouse Schwann, donor2.CNhs12573.11746-123F90.15
Mouse hepatic Sinusoidal Endothelial Cells, donor1.CNhs13209.11830-124G30.58
Mouse hepatic Stellate Cells (lipocyte), donor1.CNhs13196.11825-124F70.00
Mouse hepatocyte, donor1.CNhs13078.11714-123C40.00
Mouse hepatocyte, donor3.CNhs12615.11637-122C80.00
Mouse hepatocyte, donor6.CNhs13090.11822-124F40.00
Mouse hepatocyte, donor8.CNhs13091.11824-124F60.00
SABiosciences XpressRef Mouse Universal Total RNA, pool1.CNhs10611.10003-101A70.00
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep1 (000hC4).CNhs11939.12338-130I70.17
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep2 (000hC5).CNhs13275.12460-132E30.26
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep3 (000hC6).CNhs13324.12582-133I80.00
Sox2+ Supporting cells - organ of corti, pool1.CNhs12532.12157-128G60.42
TSt-4/DLL1 feeder cells, biol_rep1.CNhs13407.12971-138H11.28
TSt-4/DLL1 feeder cells, biol_rep2.CNhs13408.12987-138I80.00
TSt-4/DLL1 feeder cells, biol_rep3.CNhs13409.13003-139B60.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep1.CNhs13739.13367-143G10.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep2.CNhs13740.13368-143G20.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep3.CNhs13741.13369-143G31.01
Universal RNA - Mouse Normal Tissues Biochain, pool1.CNhs10613.10008-101B60.23
accessory axillary lymph node, adult.CNhs10475.1063-29H90.78
adrenal gland, adult.CNhs10508.49-24D70.45
adrenal gland, embryo E14.CNhs11038.406-44C51.39
adrenal gland, embryo E16.CNhs11004.1254-43D60.30
adrenal gland, embryo E17.CNhs11043.1263-45I10.23
adrenal gland, embryo E18.CNhs11026.1262-18F50.30
adrenal gland, neonate N00.CNhs11191.1311-23C10.35
adrenal gland, neonate N25.CNhs11223.1377-27I30.00
amnion, adult pregnant day17.5.CNhs10488.583-22A80.25
aorta, adult.CNhs10498.46-23H10.29
bone (os femoris), adult.CNhs10483.56-12G20.00
bone (os femoris), neonate N02.CNhs11227.1985-43F50.32
bone (os femoris), neonate N16.CNhs11225.1525-43A60.66
bone (os femoris), neonate N20.CNhs11195.1350-25C31.45
cecum, adult.CNhs10467.37-13H40.00
cerebellum, adult.CNhs10494.15-8B22.64
cerebellum, neonate N30.CNhs11135.1395-42I22.30
colon, adult.CNhs10468.36-18H70.26
common myeloid progenitor CMP, biol_rep1.CNhs12550.12122-128C70.72
common myeloid progenitor CMP, biol_rep2.CNhs12203.12125-128D11.20
common myeloid progenitor CMP, biol_rep3.CNhs12551.12128-128D40.38
corpora quadrigemina, adult.CNhs10501.16-22A44.34
corpus striatum, adult.CNhs10487.19-21D81.83
corpus striatum, neonate N00.CNhs11226.630-43F11.01
cortex, adult.CNhs10473.12-14D52.78
cortex, neonate N30.CNhs11107.1392-42F23.32
diencephalon, adult.CNhs10482.20-12F25.40
diencephalon, neonate N30.CNhs11201.1388-42B22.92
epididymis and seminiferous tubule, neonate N00.CNhs11218.1310-23B11.22
epididymis and seminiferous tubule, neonate N30.CNhs11199.1387-42A20.75
epididymis, adult.CNhs10490.58-23B20.00
eyeball, adult.CNhs10484.31-12G40.63
eyeball, embryo E12.CNhs11016.345-16C61.43
eyeball, embryo E14.CNhs10521.399-16E20.92
eyeball, embryo E15.CNhs10593.426-16C90.36
eyeball, embryo E17.CNhs11023.1261-18D40.90
eyeball, neonate N00.CNhs11207.633-15C60.54
eyeball, neonate N01.CNhs11140.1532-43E71.15
eyeball, neonate N02.CNhs11205.1551-44G80.84
eyeball, neonate N16.CNhs11188.777-19A20.26
forelimb, embryo E11.CNhs10596.335-25E20.86
forelimb, embryo E12.CNhs10600.359-14H20.00
forelimb, embryo E13.CNhs10589.384-1E21.06
forelimb, embryo E14.CNhs10577.413-26A80.22
forelimb, embryo E15.CNhs11007.437-20E70.56
forelimb, embryo E17.CNhs10598.1517-43C40.70
forelimb, embryo E18.CNhs11008.1520-43B51.03
gonad, embryo E13.CNhs11044.1564-45I60.40
granulocyte macrophage progenitor GMP, biol_rep1.CNhs12206.12123-128C81.40
granulocyte macrophage progenitor GMP, biol_rep2.CNhs12202.12126-128D20.26
granulocyte macrophage progenitor GMP, biol_rep3.CNhs11928.12129-128D50.28
heart, embryo E11.CNhs10586.331-24E91.04
heart, embryo E12.CNhs11015.353-12F50.94
heart, embryo E13.CNhs11013.376-3I90.18
heart, embryo E14.CNhs10597.403-26D40.95
heart, embryo E15.CNhs11017.431-16C80.79
heart, embryo E16.CNhs11021.457-17C60.62
heart, embryo E17.CNhs11025.479-18E50.23
heart, embryo E18.CNhs11030.1283-20G30.27
heart, neonate N00.CNhs11213.639-21E30.47
heart, neonate N03.CNhs11221.1349-25I20.66
heart, neonate N10.CNhs11118.749-24G10.49
heart, neonate N16.CNhs11209.782-15G10.49
heart, neonate N20.CNhs11127.821-26I60.88
heart, neonate N25.CNhs11196.1351-25D30.88
heart, neonate N30.CNhs11202.1390-42D20.00
hippocampus, adult.CNhs10478.13-16E81.68
hippocampus, neonate N00.CNhs11228.627-43G10.51
intestinal mucosa, adult.CNhs10506.860-29I30.00
intestine, adult.CNhs10496.178-9A30.00
intestine, embryo E12.CNhs11019.1251-16I50.64
intestine, embryo E13.CNhs11010.381-16D50.23
intestine, embryo E15.CNhs10602.976-16D80.52
intestine, embryo E16.CNhs10585.463-22H40.40
intestine, embryo E17.CNhs10582.482-18D30.67
intestine, embryo E18.CNhs10526.1289-20F70.57
intestine, neonate N00.CNhs11126.644-26D10.47
intestine, neonate N01.CNhs11192.1322-23E90.00
intestine, neonate N06.CNhs11102.688-20B80.25
intestine, neonate N07.CNhs11095.720-20F20.40
intestine, neonate N10.CNhs11098.755-23A50.39
intestine, neonate N20.CNhs11187.827-18D10.90
intestine, neonate N25.CNhs11121.1352-25E30.00
intestine, neonate N30.CNhs11131.1384-42G10.20
kidney, embryo E14.CNhs10606.411-4I91.14
kidney, embryo E15.CNhs10997.434-16F80.69
kidney, embryo E16.CNhs10584.464-22A52.25
kidney, embryo E17.CNhs11028.483-18I20.41
kidney, embryo E18.CNhs11001.1288-20C70.39
kidney, neonate N00.CNhs11214.646-21G70.63
kidney, neonate N10.CNhs11206.758-6D50.63
kidney, neonate N20.CNhs11113.832-19I10.59
kidney, neonate N25.CNhs11122.1353-25F30.16
kidney, neonate N30.CNhs11203.1385-42H10.25
liver, adult pregnant day01.CNhs10466.508-5B20.30
liver, embryo E12.CNhs10601.355-15F80.33
liver, embryo E13.CNhs10524.378-3H60.39
liver, embryo E14.CNhs10594.409-16E10.22
liver, embryo E15.CNhs10520.433-16D70.41
liver, embryo E16.CNhs10523.462-17F50.24
liver, embryo E17.CNhs10510.481-18A30.00
liver, embryo E18.CNhs10579.499-43G40.29
liver, neonate N00.CNhs11117.641-24F40.49
liver, neonate N03.CNhs11123.1345-25G20.55
liver, neonate N06.CNhs11101.684-20A82.88
liver, neonate N07.CNhs11103.716-20H20.00
liver, neonate N10.CNhs11115.751-24B90.94
liver, neonate N20.CNhs11220.823-25A30.00
liver, neonate N25.CNhs11198.1368-26H10.18
liver, neonate N30.CNhs11106.1382-42D10.00
lung, adult.CNhs10474.28-22B10.00
lung, embryo E12.CNhs10522.354-16G20.57
lung, embryo E14.CNhs10604.404-26F80.33
lung, embryo E15.CNhs11020.432-17C50.51
lung, embryo E16.CNhs10998.458-17B61.41
lung, embryo E17.CNhs10605.480-44A61.51
lung, embryo E18.CNhs10583.1287-20I60.95
lung, neonate N00.CNhs11224.640-42C60.59
lung, neonate N06.CNhs11212.683-20E50.47
lung, neonate N07.CNhs11111.715-19A30.89
lung, neonate N10.CNhs11219.750-23E60.96
lung, neonate N20.CNhs11109.822-18A40.49
lung, neonate N25.CNhs11119.1359-25C71.21
lung, neonate N30.CNhs11133.1394-42H20.29
macrophage, bone marrow derived, pool1.CNhs11457.3560-170A10.00
macrophage, bone marrow derived, pool2.CNhs11532.3632-171A10.00
mammary gland, adult lactating day02.CNhs10480.595-22B60.98
mammary gland, adult pregnant day19.CNhs10476.588-5H20.00
medulla oblongata, adult.CNhs10477.17-12C24.33
medulla oblongata, neonate N30.CNhs11200.1396-42A34.81
mouse fibroblast cell line: CRL-1658 NIH/3T3.CNhs11093.1830-49C70.16
muscle (biceps femoris), neonate N30.CNhs11129.1389-42C20.50
neurospheres - enteric neuron derived, biol_rep1.CNhs13087.11810-124E10.00
neurospheres - enteric neuron derived, biol_rep2.CNhs13088.11811-124E20.00
neurospheres - enteric neuron derived, biol_rep3.CNhs13089.11812-124E30.22
neurospheres - parasympathetic neuron derived, biol_rep1.CNhs13084.11807-124D70.24
neurospheres - parasympathetic neuron derived, biol_rep2.CNhs13085.11808-124D81.34
neurospheres - parasympathetic neuron derived, biol_rep3.CNhs13086.11809-124D90.00
neurospheres - sympathetic neuron derived, biol_rep1.CNhs13081.11804-124D40.40
neurospheres - sympathetic neuron derived, biol_rep2.CNhs13082.11805-124D50.29
neurospheres - sympathetic neuron derived, biol_rep3.CNhs13083.11806-124D60.79
olfactory brain, adult.CNhs10489.18-22I95.78
ovary, adult.CNhs10507.91-2I70.14
ovary, embryo E18.CNhs11040.505-44H70.89
ovary, neonate N00.CNhs11217.1299-22I40.65
oviduct, adult pregnant day01.CNhs10500.988-6G60.16
pancreas, adult.CNhs10486.34-16E40.00
pancreas, embryo E14.CNhs11012.405-44F40.49
pancreas, embryo E15.CNhs11042.1556-45F20.30
pancreas, embryo E16.CNhs11003.460-26E50.19
pancreas, embryo E17.CNhs10599.1558-45G30.00
pancreas, embryo E18.CNhs10580.1535-43I70.00
pancreas, neonate N00.CNhs11105.645-26G90.00
pancreas, neonate N01.CNhs11138.1531-43D71.09
pancreas, neonate N02.CNhs11139.1539-43D80.71
pancreas, neonate N16.CNhs11136.787-43B60.00
pancreas, neonate N25.CNhs11094.1555-45E20.00
pancreas, neonate N30.CNhs11182.1548-44H51.03
pituitary gland, adult.CNhs10493.21-1G80.68
pituitary gland, embryo E12.CNhs11018.346-16E60.90
pituitary gland, embryo E13.CNhs11009.370-44C70.91
pituitary gland, embryo E14.CNhs11037.398-44A50.43
pituitary gland, embryo E15.CNhs10592.427-16B91.06
pituitary gland, embryo E16.CNhs11036.449-43F60.18
pituitary gland, embryo E17.CNhs11039.1265-44F50.82
pituitary gland, neonate N00.CNhs11190.1308-22E90.30
placenta, adult pregnant day10.CNhs10472.539-13I70.00
placenta, adult pregnant day17.CNhs10464.577-18G30.21
prostate, adult.CNhs10470.859-1F80.00
skin, adult.CNhs10492.30-1C30.16
skin, neonate N00.CNhs11124.650-25G40.48
skin, neonate N03.CNhs11215.662-22H30.54
skin, neonate N06.CNhs11097.693-20I50.72
skin, neonate N10.CNhs11108.762-6C40.49
small intestine, neonate N16.CNhs11114.790-21I10.29
spinal cord, adult.CNhs10505.24-13C93.34
spleen, adult.CNhs10465.25-2G20.34
spleen, embryo E16.CNhs11035.461-43C11.24
spleen, embryo E18.CNhs11011.1271-21F20.56
spleen, neonate N10.CNhs11116.752-24D10.00
spleen, neonate N20.CNhs11112.824-19H10.68
spleen, neonate N25.CNhs11099.1354-25G30.23
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep1.CNhs12534.12121-128C61.02
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep2.CNhs12535.12124-128C90.70
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep3.CNhs12536.12127-128D31.93
stomach, adult.CNhs10503.33-1H60.00
stomach, embryo E12.CNhs10588.356-43E30.63
stomach, embryo E15.CNhs10603.1252-16G80.20
stomach, embryo E16.CNhs11022.459-17D40.32
stomach, embryo E17.CNhs11006.1035-18D50.21
stomach, embryo E18.CNhs10999.1286-20C60.22
stomach, neonate N03.CNhs11193.1340-24B80.13
stomach, neonate N07.CNhs11210.718-18A90.33
stomach, neonate N25.CNhs11104.1355-25E40.26
stomach, neonate N30.CNhs11134.1386-42I10.13
submandibular gland, adult.CNhs10469.59-29C10.00
testis, adult.CNhs10504.57-7G50.00
testis, embryo E13.CNhs11031.389-23F50.45
testis, embryo E15.CNhs11034.443-27C50.33
testis, embryo E16.CNhs11033.470-26G50.58
testis, embryo E17.CNhs11029.486-18I50.52
testis, embryo E18.CNhs11027.503-18G50.34
testis, neonate N00.CNhs11189.1300-22B70.12
testis, neonate N07.CNhs11222.726-26I40.91
testis, neonate N10.CNhs11204.763-44D90.84
testis, neonate N20.CNhs11110.839-18H30.48
testis, neonate N30.CNhs11130.1391-42E20.58
thymus, adult.CNhs10471.38-12B50.95
thymus, embryo E14.CNhs11041.402-44I40.20
thymus, embryo E15.CNhs11005.430-45I20.72
thymus, embryo E16.CNhs11002.456-26C50.78
thymus, embryo E17.CNhs10581.478-18C11.97
thymus, embryo E18.CNhs10595.1273-19G41.99
thymus, neonate N02.CNhs11181.1541-43F81.44
thymus, neonate N03.CNhs11137.2104-43C70.89
thymus, neonate N06.CNhs11197.681-26C41.41
thymus, neonate N07.CNhs11211.713-19D31.07
thymus, neonate N10.CNhs11194.748-24E41.51
thymus, neonate N20.CNhs11186.820-7A20.78
thymus, neonate N25.CNhs11125.1362-25G71.44
thymus, neonate N30.CNhs11132.1393-42G21.29
tongue, adult.CNhs10499.32-1B40.00
trophoblast stem cell line B1 differentiation, day00, biol_rep1.CNhs13526.13297-142H30.22
trophoblast stem cell line R1AB differentiation, day00, biol_rep1.CNhs13481.13283-142F70.09
trophoblast stem cell line Rybp differentiation, day00, biol_rep1.CNhs13519.13290-142G50.00
urinary bladder, adult.CNhs10481.879-12E40.00
uterus, adult pregnant day19.CNhs10497.590-15F50.38
uterus, adult.CNhs10509.92-27E50.37
vagina, adult.CNhs10502.89-27D50.64
vesicular gland, adult.CNhs10491.51-27F80.00
visual cortex - wildtype, neonate N15, donor1.CNhs13031.10235-104A11.13
visual cortex - wildtype, neonate N15, donor2.CNhs13032.10236-104A21.38
visual cortex - wildtype, neonate N15, donor3.CNhs13033.10237-104A33.44
visual cortex - wildtype, neonate N15, donor5.CNhs13820.10349-105D73.09
visual cortex - wildtype, neonate N30, donor1.CNhs13034.10238-104A45.48
visual cortex - wildtype, neonate N30, donor2.CNhs13035.10239-104A53.78
visual cortex - wildtype, neonate N30, donor3.CNhs13036.10240-104A63.38
visual cortex - wildtype, neonate N60-70, donor1.CNhs13037.10241-104A73.15
visual cortex - wildtype, neonate N60-70, donor2.CNhs13038.10242-104A84.53
visual cortex - wildtype, neonate N60-70, donor3.CNhs13039.10243-104A92.59
whole body, embryo E11.CNhs11014.324-5I80.73
whole body, embryo E12.CNhs10587.857-27C91.20
whole body, embryo E13.CNhs10512.372-23H20.34
whole body, embryo E14.5.CNhs10578.420-27D20.24
whole body, embryo E14.CNhs10519.395-14B10.84
whole body, embryo E16.CNhs10514.453-14F20.55
whole body, embryo E17.5, pool1 (internal control).CNhs10479.3139-67G51.56
whole body, embryo E17.5, pool1 (internal control).CNhs10495.3139-67G51.24
whole body, embryo E17.5, pool1 (internal control).CNhs10511.3139-67G50.96
whole body, embryo E17.5, pool1 (internal control).CNhs10527.3139-67G50.76
whole body, embryo E17.5, pool1 (internal control).CNhs10591.3139-67G50.51
whole body, embryo E17.5, pool1 (internal control).CNhs10607.3139-67G50.19
whole body, embryo E17.5, pool1 (internal control).CNhs10623.3139-67G50.84
whole body, embryo E17.5, pool1 (internal control).CNhs10639.3139-67G50.77
whole body, embryo E17.5, pool1 (internal control).CNhs10655.3139-67G50.80
whole body, embryo E17.5, pool1 (internal control).CNhs10725.3139-67G50.95
whole body, embryo E17.5, pool1 (internal control).CNhs10749.3139-67G50.93
whole body, embryo E17.5, pool1 (internal control).CNhs10840.3139-67G50.39
whole body, embryo E17.5, pool1 (internal control).CNhs10856.3139-67G50.00
whole body, embryo E17.5, pool1 (internal control).CNhs10880.3139-67G51.03
whole body, embryo E17.5, pool1 (internal control).CNhs11000.3139-67G50.34
whole body, embryo E17.5, pool1 (internal control).CNhs11024.3139-67G50.53
whole body, embryo E17.5, pool1 (internal control).CNhs11032.3139-67G50.24
whole body, embryo E17.5, pool1 (internal control).CNhs11048.3139-67G50.87
whole body, embryo E17.5, pool1 (internal control).CNhs11072.3139-67G50.66
whole body, embryo E17.5, pool1 (internal control).CNhs11080.3139-67G50.59
whole body, embryo E17.5, pool1 (internal control).CNhs11096.3139-67G50.73
whole body, embryo E17.5, pool1 (internal control).CNhs11120.3139-67G51.05
whole body, embryo E17.5, pool1 (internal control).CNhs11128.3139-67G50.68
whole body, embryo E17.5, pool1 (internal control).CNhs11184.3139-67G51.12
whole body, embryo E17.5, pool1 (internal control).CNhs11208.3139-67G50.71
whole body, embryo E17.5, pool1 (internal control).CNhs11216.3139-67G50.79
whole body, embryo E17.5, pool1 (internal control).CNhs11246.3139-67G50.00
whole body, embryo E17.5, pool1 (internal control).CNhs11278.3139-67G50.46
whole body, embryo E17.5.CNhs10513.490-9F90.96
whole body, embryo E17.CNhs10517.475-3I51.00
whole body, embryo E18.CNhs10516.493-3B30.23
whole body, neonate N00.CNhs10525.657-19C20.43
whole body, neonate N01.CNhs10576.659-23C60.57
whole body, neonate N06.CNhs10515.692-21D11.10
whole body, neonate N10.CNhs10518.761-6B40.70





  • Click each plot point to find sample in table


Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data

Cell type
Ontology termp-valuen
CNS neuron (sensu Vertebrata)4.65e-0723
neuroblast (sensu Vertebrata)4.65e-0723

Uber anatomy
Ontology termp-valuen
regional part of nervous system1.83e-2054
neural tube1.57e-1852
neural rod1.57e-1852
future spinal cord1.57e-1852
neural keel1.57e-1852
central nervous system4.46e-1773
nervous system2.94e-1675
neurectoderm7.69e-1564
neural plate7.69e-1564
presumptive neural plate7.69e-1564
brain1.99e-1447
future brain1.99e-1447
gray matter2.08e-1434
regional part of brain1.81e-1346
ecto-epithelium1.42e-1173
ectoderm-derived structure1.50e-1195
ectoderm1.50e-1195
presumptive ectoderm1.50e-1195
occipital lobe1.86e-1110
visual cortex1.86e-1110
neocortex1.86e-1110
posterior neural tube4.33e-1112
chordal neural plate4.33e-1112
brain grey matter2.78e-1029
regional part of telencephalon2.78e-1029
telencephalon2.78e-1029
anterior neural tube6.83e-1040
regional part of forebrain4.49e-0939
forebrain4.49e-0939
future forebrain4.49e-0939
pre-chordal neural plate2.44e-0849
structure with developmental contribution from neural crest4.17e-0892
regional part of cerebral cortex7.19e-0817
spinal cord2.97e-076
dorsal region element2.97e-076
dorsum2.97e-076
cerebral cortex6.19e-0721
cerebral hemisphere6.19e-0721
pallium6.19e-0721
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