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{{MCL_coexpression_mm9
{
|coexpression_dpi_cluster_scores_mean=0.0105473146707103

Latest revision as of 14:33, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:116019179..116019195,-p@chr10:116019179..116019195
-
Mm9::chr10:128157290..128157311,+p@chr10:128157290..128157311
+
Mm9::chr10:128157377..128157393,-p@chr10:128157377..128157393
-
Mm9::chr10:128181993..128182079,+p@chr10:128181993..128182079
+
Mm9::chr10:128182143..128182178,-p@chr10:128182143..128182178
-
Mm9::chr10:128182249..128182290,+p@chr10:128182249..128182290
+
Mm9::chr10:128182534..128182555,-p@chr10:128182534..128182555
-
Mm9::chr10:128183289..128183308,-p@chr10:128183289..128183308
-
Mm9::chr10:128183513..128183530,+p@chr10:128183513..128183530
+
Mm9::chr10:129759883..129759898,+p2@5830405N20Rik
Mm9::chr10:129759901..129759912,+p4@5830405N20Rik
Mm9::chr10:129759925..129759961,+p1@5830405N20Rik
Mm9::chr10:129759971..129759980,+p3@5830405N20Rik
Mm9::chr10:129791525..129791529,+p@chr10:129791525..129791529
+
Mm9::chr10:129798148..129798151,+p@chr10:129798148..129798151
+
Mm9::chr10:19314524..19314541,-p@chr10:19314524..19314541
-
Mm9::chr10:19987025..19987035,+p@chr10:19987025..19987035
+
Mm9::chr10:20880874..20880893,+p@chr10:20880874..20880893
+
Mm9::chr10:22022365..22022379,-p4@uc007eph.1
p4@uc007epi.1
Mm9::chr10:28388351..28388358,+p6@Themis
Mm9::chr10:28388454..28388458,+p5@Themis
Mm9::chr10:57834157..57834247,+p4@Lims1
Mm9::chr10:79614071..79614120,+p5@Midn
Mm9::chr10:80791431..80791449,+p2@Tbxa2r
Mm9::chr10:80791464..80791484,+p1@Tbxa2r
Mm9::chr10:92772455..92772469,+p@chr10:92772455..92772469
+
Mm9::chr11:100800869..100800880,-p6@Stat3
Mm9::chr11:101594266..101594279,+p3@Dhx8
Mm9::chr11:106248533..106248554,+p@chr11:106248533..106248554
+
Mm9::chr11:11585545..11585556,+p10@Ikzf1
Mm9::chr11:11585912..11585950,+p6@Ikzf1
Mm9::chr11:11619765..11619779,+p@chr11:11619765..11619779
+
Mm9::chr11:11669556..11669568,+p@chr11:11669556..11669568
+
Mm9::chr11:11669849..11669860,-p@chr11:11669849..11669860
-
Mm9::chr11:117188367..117188376,-p@chr11:117188367..117188376
-
Mm9::chr11:117643672..117643695,+p3@Tmc8
Mm9::chr11:117733195..117733207,-p4@Tha1
Mm9::chr11:117875858..117875891,+p@chr11:117875858..117875891
+
Mm9::chr11:44333904..44333942,+p2@Rnf145
Mm9::chr11:52066984..52066995,-p@chr11:52066984..52066995
-
Mm9::chr11:52088343..52088399,-p@chr11:52088343..52088399
-
Mm9::chr11:52093503..52093535,+p@chr11:52093503..52093535
+
Mm9::chr11:52096190..52096207,+p@chr11:52096190..52096207
+
Mm9::chr11:52096260..52096274,-p12@Tcf7
Mm9::chr11:52123165..52123174,+p@chr11:52123165..52123174
+
Mm9::chr11:54577656..54577676,-p@chr11:54577656..54577676
-
Mm9::chr11:54577683..54577709,-p@chr11:54577683..54577709
-
Mm9::chr11:6100414..6100449,-p2@Nudcd3
Mm9::chr11:6374909..6374949,+p3@ENSMUST00000127488
Mm9::chr11:6460975..6460979,-p@chr11:6460975..6460979
-
Mm9::chr11:6461181..6461184,+p7@Ccm2
Mm9::chr11:87548130..87548141,-p@chr11:87548130..87548141
-
Mm9::chr11:87565410..87565426,+p@chr11:87565410..87565426
+
Mm9::chr11:95218023..95218036,-p@chr11:95218023..95218036
-
Mm9::chr11:96325901..96325951,+p1@Skap1
Mm9::chr11:96325963..96325974,+p2@Skap1
Mm9::chr11:96428800..96428804,+p@chr11:96428800..96428804
+
Mm9::chr11:96479817..96479820,+p@chr11:96479817..96479820
+
Mm9::chr11:96604269..96604273,+p@chr11:96604269..96604273
+
Mm9::chr12:108421758..108421776,+p1@ENSMUST00000122988
Mm9::chr12:109241411..109241422,-p8@Bcl11b
Mm9::chr12:111702111..111702124,+p@chr12:111702111..111702124
+
Mm9::chr12:111702129..111702142,+p@chr12:111702129..111702142
+
Mm9::chr12:114197719..114197739,-p@chr12:114197719..114197739
-
Mm9::chr12:114197741..114197760,-p@chr12:114197741..114197760
-
Mm9::chr12:77471524..77471607,+p1@Zbtb1
Mm9::chr12:81361507..81361530,-p5@Actn1
Mm9::chr13:110627862..110627873,-p@chr13:110627862..110627873
-
Mm9::chr13:110692845..110692908,+p2@Pde4d
Mm9::chr13:118009391..118009444,+p2@Emb
Mm9::chr13:20276809..20276858,+p4@Elmo1
Mm9::chr13:24508747..24508820,+p1@Cmah
Mm9::chr13:60950218..60950230,-p@chr13:60950218..60950230
-
Mm9::chr13:90229161..90229221,-p2@LOC100044170
p2@Xrcc4
Mm9::chr13:92800843..92800854,-p2@ENSMUST00000149630
Mm9::chr13:92800865..92800900,-p1@ENSMUST00000149630
Mm9::chr13:99660742..99660760,-p@chr13:99660742..99660760
-
Mm9::chr13:99660991..99661018,-p6@Tnpo1
Mm9::chr14:101876704..101876731,-p@chr14:101876704..101876731
-
Mm9::chr14:28051195..28051198,+p6@Arhgef3
Mm9::chr14:54164557..54164592,+p2@ENSMUST00000103651
p2@uc007tsn.1
p2@uc011zkx.1
Mm9::chr14:54173718..54173721,+p1@ENSMUST00000103652
Mm9::chr14:54396605..54396632,+p1@ENSMUST00000103670
Mm9::chr14:54482732..54482763,+p1@ENSMUST00000142754
Mm9::chr14:54495614..54495621,+p3@ENSMUST00000103675
Mm9::chr14:54495634..54495664,+p1@ENSMUST00000103675
Mm9::chr14:54495667..54495680,+p2@ENSMUST00000103675
Mm9::chr14:54501207..54501220,+p2@ENSMUST00000103676
Mm9::chr14:54565667..54565673,+p2@ENSMUST00000103677
Mm9::chr14:54788271..54788280,+p5@uc007tuh.1
Mm9::chr14:54788317..54788328,+p2@ENSMUST00000103694
p3@uc007tuh.1
Mm9::chr14:54851103..54851118,-p@chr14:54851103..54851118
-
Mm9::chr14:60016011..60016053,-p@chr14:60016011..60016053
-
Mm9::chr14:61328232..61328320,+p@chr14:61328232..61328320
+
Mm9::chr14:71174780..71174791,+p@chr14:71174780..71174791
+
Mm9::chr15:6524783..6524814,+p@chr15:6524783..6524814
+
Mm9::chr15:6529841..6529882,+p2@Fyb
Mm9::chr15:6529884..6529900,+p1@Fyb
Mm9::chr15:80402854..80402865,+p6@Grap2
Mm9::chr15:80402885..80402890,+p9@Grap2
Mm9::chr15:80402899..80402910,+p7@Grap2
Mm9::chr15:80403006..80403031,+p1@Grap2
Mm9::chr15:80403036..80403047,+p4@Grap2
Mm9::chr15:80408797..80408821,+p@chr15:80408797..80408821
+
Mm9::chr15:80528031..80528046,-p1@A430088P11Rik
Mm9::chr15:82729448..82729465,+p4@Gm20324
Mm9::chr15:82729469..82729488,+p1@Gm20324
Mm9::chr15:82729490..82729512,+p3@Gm20324
Mm9::chr15:89140401..89140433,-p@chr15:89140401..89140433
-
Mm9::chr16:23175326..23175386,+p1@ENSMUST00000149488
p1@uc007ytl.1
Mm9::chr16:3976488..3976512,-p3@Nlrc3
Mm9::chr16:3976519..3976535,-p2@Nlrc3
Mm9::chr16:3976541..3976567,-p1@Nlrc3
Mm9::chr16:3976568..3976575,-p5@Nlrc3
Mm9::chr16:3976626..3976636,-p4@Nlrc3
Mm9::chr16:46120232..46120250,-p2@Cd96
Mm9::chr16:46120251..46120294,-p1@Cd96
Mm9::chr16:46120304..46120324,-p3@Cd96
Mm9::chr16:48772122..48772143,-p2@Trat1
Mm9::chr16:48772149..48772164,-p3@Trat1
Mm9::chr16:48772165..48772182,-p1@Trat1
Mm9::chr16:55949309..55949338,+p@chr16:55949309..55949338
+
Mm9::chr16:64770972..64771010,-p2@4930453N24Rik
Mm9::chr16:91545918..91545939,+p@chr16:91545918..91545939
+
Mm9::chr16:93586806..93586839,-p@chr16:93586806..93586839
-
Mm9::chr16:96123079..96123103,-p@chr16:96123079..96123103
-
Mm9::chr17:15843108..15843127,-p@chr17:15843108..15843127
-
Mm9::chr17:29144750..29144775,-p2@Stk38
Mm9::chr17:29144778..29144801,-p4@Stk38
Mm9::chr17:31344994..31345057,+p1@Ubash3a
Mm9::chr17:31701800..31701818,+p2@Pknox1
Mm9::chr17:32540496..32540535,-p1@Rasal3
Mm9::chr17:32540539..32540550,-p4@Rasal3
Mm9::chr17:32546460..32546465,-p@chr17:32546460..32546465
-
Mm9::chr17:32561047..32561072,-p2@Pglyrp2
Mm9::chr17:32561084..32561098,-p4@Pglyrp2
Mm9::chr17:47642066..47642081,+p9@Ccnd3
Mm9::chr17:47644935..47644955,-p@chr17:47644935..47644955
-
Mm9::chr17:51968990..51969009,+p@chr17:51968990..51969009
+
Mm9::chr17:51971991..51972003,-p4@Satb1
Mm9::chr17:51972017..51972022,-p17@Satb1
Mm9::chr17:51972530..51972571,-p7@Satb1
Mm9::chr17:51972567..51972586,+p@chr17:51972567..51972586
+
Mm9::chr17:85259356..85259370,-p@chr17:85259356..85259370
-
Mm9::chr18:5334737..5334749,-p5@Zfp438
Mm9::chr19:11509692..11509706,+p@chr19:11509692..11509706
+
Mm9::chr19:11509709..11509735,+p@chr19:11509709..11509735
+
Mm9::chr19:34266730..34266756,+p1@Stambpl1
Mm9::chr19:34625370..34625437,+p2@Ifit2
Mm9::chr19:45649611..45649620,+p@chr19:45649611..45649620
+
Mm9::chr19:57120229..57120233,-p@chr19:57120229..57120233
-
Mm9::chr19:57193387..57193469,-p1@Ablim1
Mm9::chr19:57193471..57193516,-p3@Ablim1
Mm9::chr1:123327705..123327729,+p2@Ccdc93
Mm9::chr1:167718877..167718900,+p1@Cd247
Mm9::chr1:173847620..173847634,+p3@Slamf6
Mm9::chr1:173847643..173847648,+p6@Slamf6
Mm9::chr1:191691057..191691066,-p@chr1:191691057..191691066
-
Mm9::chr1:195027331..195027352,-p@chr1:195027331..195027352
-
Mm9::chr1:195027791..195027802,-p5@Traf3ip3
Mm9::chr1:43990453..43990471,+p2@Tpp2
Mm9::chr1:52856329..52856362,-p@chr1:52856329..52856362
-
Mm9::chr1:52856386..52856406,-p@chr1:52856386..52856406
-
Mm9::chr1:9838456..9838479,+p4@Sgk3
Mm9::chr2:101832102..101832110,+p@chr2:101832102..101832110
+
Mm9::chr2:11093707..11093767,+p1@Prkcq
Mm9::chr2:11093788..11093799,+p11@Prkcq
Mm9::chr2:11093809..11093826,+p6@Prkcq
Mm9::chr2:122293460..122293486,-p1@Bambi-ps1
Mm9::chr2:156712908..156712961,-p1@Sla2
Mm9::chr2:156712967..156712976,-p3@Sla2
Mm9::chr2:156796016..156796029,-p@chr2:156796016..156796029
-
Mm9::chr2:174439846..174439871,-p@chr2:174439846..174439871
-
Mm9::chr2:174439873..174439885,-p@chr2:174439873..174439885
-
Mm9::chr2:18920015..18920022,+p2@ENSMUST00000028069
Mm9::chr2:31937072..31937082,+p@chr2:31937072..31937082
+
Mm9::chr2:31938740..31938791,-p3@Fam78a
Mm9::chr2:31938824..31938850,-p4@Fam78a
Mm9::chr2:31939141..31939154,-p6@Fam78a
Mm9::chr2:31940170..31940251,-p2@Fam78a
Mm9::chr2:49701837..49701876,+p@chr2:49701837..49701876
+
Mm9::chr2:68797875..68797891,+p4@Lass6
Mm9::chr2:68797896..68797907,+p5@Lass6
Mm9::chr2:76053420..76053462,-p2@Pde11a
Mm9::chr2:79095500..79095556,+p3@Itga4
Mm9::chr2:91077026..91077029,-p5@Ddb2
Mm9::chr2:91077034..91077078,-p2@Ddb2
Mm9::chr2:91077082..91077122,-p1@Ddb2
Mm9::chr3:102894106..102894120,+p@chr3:102894106..102894120
+
Mm9::chr3:103663352..103663383,+p6@Ptpn22
Mm9::chr3:106841224..106841253,-p@chr3:106841224..106841253
-
Mm9::chr3:130722600..130722614,-p@chr3:130722600..130722614
-
Mm9::chr3:130813200..130813252,+p1@Lef1
Mm9::chr3:130813254..130813263,+p4@Lef1
Mm9::chr3:130813268..130813275,+p12@Lef1
Mm9::chr3:130813557..130813582,+p5@Lef1
Mm9::chr3:130813586..130813604,+p7@Lef1
Mm9::chr3:130813833..130813848,+p16@Lef1
Mm9::chr3:130814285..130814323,+p@chr3:130814285..130814323
+
Mm9::chr3:130814957..130814978,-p1@uc008rjh.1
Mm9::chr3:130815382..130815401,+p14@Lef1
Mm9::chr3:130815703..130815721,+p2@Lef1
Mm9::chr3:130816769..130816783,+p@chr3:130816769..130816783
+
Mm9::chr3:130887572..130887619,+p@chr3:130887572..130887619
+
Mm9::chr3:130892189..130892194,+p@chr3:130892189..130892194
+
Mm9::chr3:130909438..130909442,+p@chr3:130909438..130909442
+
Mm9::chr3:130925709..130925711,+p@chr3:130925709..130925711
+
Mm9::chr3:130926856..130926869,+p@chr3:130926856..130926869
+
Mm9::chr3:142545404..142545421,-p4@Pkn2
Mm9::chr3:68810345..68810351,-p@chr3:68810345..68810351
-
Mm9::chr3:87650647..87650694,+p2@Sh2d2a
Mm9::chr3:87650700..87650710,+p4@Sh2d2a
Mm9::chr3:88257341..88257348,-p@chr3:88257341..88257348
-
Mm9::chr3:88991397..88991410,+p10@Fam189b
Mm9::chr3:95478057..95478076,-p@chr3:95478057..95478076
-
Mm9::chr4:102662199..102662237,+p@chr4:102662199..102662237
+
Mm9::chr4:102887396..102887423,-p2@Slc35d1
Mm9::chr4:120648124..120648189,-p3@Smap2
Mm9::chr4:120648209..120648221,-p7@Smap2
Mm9::chr4:123250182..123250202,-p@chr4:123250182..123250202
-
Mm9::chr4:129250881..129250896,-p6@Lck
Mm9::chr4:140501295..140501347,+p@chr4:140501295..140501347
+
Mm9::chr4:149383639..149383657,-p@chr4:149383639..149383657
-
Mm9::chr4:43496568..43496602,-p1@Sit1
Mm9::chr4:6917885..6917913,+p@chr4:6917885..6917913
+
Mm9::chr4:98103550..98103568,+p11@Inadl
Mm9::chr4:98103598..98103652,+p3@Inadl
Mm9::chr4:98103859..98103909,+p5@Inadl
Mm9::chr4:98104001..98104008,+p18@Inadl
Mm9::chr4:98104013..98104037,+p2@Inadl
Mm9::chr5:105565346..105565361,-p@chr5:105565346..105565361
-
Mm9::chr5:105947743..105947757,+p@chr5:105947743..105947757
+
Mm9::chr5:110943876..110943898,+p2@ENSMUST00000141532
p2@uc008yqx.1
Mm9::chr5:110943904..110943950,+p1@ENSMUST00000141532
p1@uc008yqx.1
Mm9::chr5:110943953..110943968,+p3@ENSMUST00000141532
p3@uc008yqx.1
Mm9::chr5:114282612..114282672,-p@chr5:114282612..114282672
-
Mm9::chr5:117959809..117959816,+p@chr5:117959809..117959816
+
Mm9::chr5:124527290..124527334,-p@chr5:124527290..124527334
-
Mm9::chr5:124530085..124530111,-p2@Abcb9
Mm9::chr5:130363312..130363350,-p1@Chchd2
p1@Gm12350
p1@Gm13202
p1@LOC100045688
Mm9::chr5:141476610..141476633,-p4@Card11
Mm9::chr5:23850390..23850404,-p@chr5:23850390..23850404
-
Mm9::chr5:34530706..34530768,+p@chr5:34530706..34530768
+
Mm9::chr5:37438703..37438727,+p4@Jakmip1
Mm9::chr5:66254507..66254533,+p4@Rhoh
Mm9::chr5:73027445..73027457,-p@chr5:73027445..73027457
-
Mm9::chr5:73143971..73144001,-p2@Txk
Mm9::chr5:73144002..73144023,-p1@Txk
Mm9::chr5:73144027..73144036,-p3@Txk
Mm9::chr5:73154951..73154973,-p@chr5:73154951..73154973
-
Mm9::chr5:96592234..96592241,+p@chr5:96592234..96592241
+
Mm9::chr6:106744611..106744630,-p@chr6:106744611..106744630
-
Mm9::chr6:117850460..117850491,+p9@Hnrnpf
Mm9::chr6:119286387..119286435,+p@chr6:119286387..119286435
+
Mm9::chr6:124662149..124662189,-p2@Emg1
Mm9::chr6:124838210..124838235,-p1@Cd4
Mm9::chr6:125047095..125047127,+p3@Chd4
Mm9::chr6:125182940..125182952,-p@chr6:125182940..125182952
-
Mm9::chr6:125183042..125183055,-p@chr6:125183042..125183055
-
Mm9::chr6:125183073..125183083,-p@chr6:125183073..125183083
-
Mm9::chr6:125186122..125186128,+p@chr6:125186122..125186128
+
Mm9::chr6:125186856..125186872,-p6@Cd27
Mm9::chr6:125186972..125186989,-p3@Cd27
Mm9::chr6:125186992..125187011,-p2@Cd27
Mm9::chr6:125187014..125187043,-p1@Cd27
Mm9::chr6:125215488..125215499,+p5@4930417O13Rik
Mm9::chr6:127424155..127424169,+p4@Parp11
Mm9::chr6:134848087..134848128,+p3@2810454H06Rik
Mm9::chr6:40841195..40841206,+p2@uc009bni.2
Mm9::chr6:40841220..40841241,+p1@uc009bni.2
Mm9::chr6:40996840..40996871,+p1@uc009bnp.1
p1@uc012eki.1
Mm9::chr6:40997070..40997084,+p4@uc009bnp.1
p4@uc012eki.1
Mm9::chr6:40997323..40997349,+p2@uc009bnp.1
p2@uc012eki.1
Mm9::chr6:40997402..40997415,+p6@uc009bnp.1
p6@uc012eki.1
Mm9::chr6:40997424..40997457,+p3@uc009bnp.1
p3@uc012eki.1
Mm9::chr6:40998138..40998152,+p4@uc009bnq.1
Mm9::chr6:40998251..40998260,+p3@uc009bnq.1
Mm9::chr6:40998282..40998298,+p1@uc009bnq.1
Mm9::chr6:40998326..40998346,+p2@uc009bnq.1
Mm9::chr6:41008393..41008416,+p@chr6:41008393..41008416
+
Mm9::chr6:41009141..41009163,+p3@uc009bns.1
Mm9::chr6:41009337..41009390,+p1@uc009bns.1
Mm9::chr6:41009399..41009429,+p2@uc009bns.1
Mm9::chr6:41009432..41009454,+p1@ENSMUST00000103265
Mm9::chr6:41012290..41012301,+p3@uc009bnu.2
Mm9::chr6:41012320..41012337,+p1@uc009bnu.2
Mm9::chr6:41012341..41012355,+p2@uc009bnu.2
Mm9::chr6:41065997..41065998,+p2@uc012ekj.1
Mm9::chr6:41065999..41066024,+p1@uc012ekj.1
Mm9::chr6:41066036..41066054,+p1@uc012ekk.1
Mm9::chr6:41068817..41068850,+p1@ENSMUST00000103269
p1@uc009bnz.1
p1@uc009boa.2
Mm9::chr6:41071322..41071333,+p2@uc012ekn.1
Mm9::chr6:41071338..41071381,+p1@uc012ekn.1
Mm9::chr6:41080085..41080100,+p2@ENSMUST00000103271
p2@uc009boc.2
Mm9::chr6:41080112..41080142,+p1@ENSMUST00000103271
p1@uc009boc.2
Mm9::chr6:41080154..41080170,+p1@uc012eko.1
p1@uc012ekp.1
Mm9::chr6:41085130..41085164,+p1@ENSMUST00000103272
p1@uc009bod.1
Mm9::chr6:41091143..41091181,+p1@uc009boe.1
Mm9::chr6:41091185..41091198,+p2@uc009boe.1
Mm9::chr6:41101149..41101160,+p2@uc009bog.1
Mm9::chr6:41101674..41101684,+p3@ENSMUST00000103274
Mm9::chr6:41101701..41101734,+p1@ENSMUST00000103274
Mm9::chr6:41101738..41101759,+p2@ENSMUST00000103274
Mm9::chr6:41113013..41113029,+p1@uc009boh.1
Mm9::chr6:41128161..41128165,+p6@uc009boj.1
Mm9::chr6:41128319..41128334,+p4@uc009boj.1
Mm9::chr6:41128379..41128400,+p2@uc009boj.1
Mm9::chr6:41128407..41128452,+p1@uc009boj.1
Mm9::chr6:41128482..41128505,+p3@uc009boj.1
Mm9::chr6:41128730..41128747,+p4@Gm5409
Mm9::chr6:41128981..41128995,+p1@uc012ekr.1
Mm9::chr6:41138197..41138206,+p2@ENSMUST00000103277
Mm9::chr6:41138215..41138241,+p1@ENSMUST00000103277
Mm9::chr6:41138311..41138333,+p@chr6:41138311..41138333
+
Mm9::chr6:41138394..41138405,+p@chr6:41138394..41138405
+
Mm9::chr6:41168073..41168094,+p1@uc009bon.1
Mm9::chr6:41177495..41177529,+p1@ENSMUST00000103280
p1@uc009boo.1
Mm9::chr6:41221376..41221410,+p1@ENSMUST00000103281
Mm9::chr6:41231266..41231303,+p1@ENSMUST00000103282
Mm9::chr6:41482817..41482828,-p@chr6:41482817..41482828
-
Mm9::chr6:41482867..41482875,-p@chr6:41482867..41482875
-
Mm9::chr6:41482920..41482933,+p5@uc009bpa.1
Mm9::chr6:41482948..41482969,+p3@uc009bpa.1
Mm9::chr6:41482981..41483002,+p1@uc009bpa.1
Mm9::chr6:41483016..41483036,+p2@uc009bpa.1
Mm9::chr6:41489198..41489210,+p@chr6:41489198..41489210
+
Mm9::chr6:41489240..41489252,+p@chr6:41489240..41489252
+
Mm9::chr6:41491943..41491953,+p3@uc009bpo.1
p3@uc009bpp.1
Mm9::chr6:41492044..41492078,+p1@uc009bpo.1
p1@uc009bpp.1
Mm9::chr6:41492543..41492556,+p@chr6:41492543..41492556
+
Mm9::chr6:41492563..41492580,+p@chr6:41492563..41492580
+
Mm9::chr6:41493669..41493702,+p@chr6:41493669..41493702
+
Mm9::chr6:41497781..41497793,+p@chr6:41497781..41497793
+
Mm9::chr6:41503536..41503558,+p@chr6:41503536..41503558
+
Mm9::chr6:41503563..41503594,+p@chr6:41503563..41503594
+
Mm9::chr6:41503623..41503631,+p@chr6:41503623..41503631
+
Mm9::chr6:41508357..41508370,-p1@uc009bpz.1
Mm9::chr6:41508390..41508413,-p1@ENSMUST00000103300
Mm9::chr6:48626113..48626154,+p1@Gimap9
Mm9::chr6:48626159..48626189,+p2@Gimap9
Mm9::chr6:86800886..86800904,+p6@Aak1
Mm9::chr6:91066755..91066769,-p@chr6:91066755..91066769
-
Mm9::chr6:94631678..94631688,-p@chr6:94631678..94631688
-
Mm9::chr6:99385365..99385376,-p21@Foxp1
Mm9::chr6:99605659..99605670,+p@chr6:99605659..99605670
+
Mm9::chr7:108241342..108241373,+p@chr7:108241342..108241373
+
Mm9::chr7:108241389..108241396,+p@chr7:108241389..108241396
+
Mm9::chr7:121461159..121461176,+p@chr7:121461159..121461176
+
Mm9::chr7:121461178..121461189,+p@chr7:121461178..121461189
+
Mm9::chr7:132777910..132777924,+p@chr7:132777910..132777924
+
Mm9::chr7:133325129..133325146,-p11@Xpo6
Mm9::chr7:133512975..133512986,-p5@Lat
Mm9::chr7:133512995..133513010,-p3@Lat
Mm9::chr7:133630769..133630780,+p2@Tufm
Mm9::chr7:133848361..133848368,-p10@Coro1a
Mm9::chr7:133851346..133851378,-p3@Coro1a
Mm9::chr7:134439750..134439761,+p5@Itgal
Mm9::chr7:134439765..134439789,+p4@Itgal
Mm9::chr7:140004847..140004865,-p14@Fam53b
Mm9::chr7:19586509..19586523,-p2@ENSMUST00000124897
Mm9::chr7:19586533..19586588,-p1@ENSMUST00000124897
Mm9::chr7:25154979..25154997,+p7@Kcnn4
Mm9::chr7:25689403..25689430,+p3@Arhgef1
Mm9::chr7:25692325..25692345,+p6@Arhgef1
Mm9::chr7:25692352..25692363,+p13@Arhgef1
Mm9::chr7:25692637..25692651,+p15@Arhgef1
Mm9::chr7:25703850..25703865,+p17@Arhgef1
Mm9::chr7:29566583..29566596,+p@chr7:29566583..29566596
+
Mm9::chr7:75420754..75420765,+p2@ENSMUST00000153805
Mm9::chr7:75508990..75508996,+p@chr7:75508990..75508996
+
Mm9::chr8:108210046..108210128,+p1@Rltpr
Mm9::chr8:108576909..108576928,+p@chr8:108576909..108576928
+
Mm9::chr8:84292041..84292048,+p@chr8:84292041..84292048
+
Mm9::chr8:86651694..86651705,+p4@Podnl1
Mm9::chr9:119890763..119890773,+p@chr9:119890763..119890773
+
Mm9::chr9:26837744..26837782,+p1@Ncapd3
Mm9::chr9:32505512..32505524,+p@chr9:32505512..32505524
+
Mm9::chr9:32524344..32524346,+p@chr9:32524344..32524346
+
Mm9::chr9:32736513..32736517,-p1@uc009osd.1
Mm9::chr9:40231223..40231239,-p@chr9:40231223..40231239
-
Mm9::chr9:42236264..42236280,-p6@Tbcel
Mm9::chr9:42236281..42236292,-p7@Tbcel
Mm9::chr9:43842073..43842091,-p@chr9:43842073..43842091
-
Mm9::chr9:43842139..43842153,-p@chr9:43842139..43842153
-
Mm9::chr9:44777854..44777857,-p@chr9:44777854..44777857
-
Mm9::chr9:44782322..44782333,-p@chr9:44782322..44782333
-
Mm9::chr9:44788425..44788452,-p2@Cd3g
Mm9::chr9:44788473..44788520,-p1@Cd3g
Mm9::chr9:44788522..44788538,-p3@Cd3g
Mm9::chr9:44788619..44788641,+p@chr9:44788619..44788641
+
Mm9::chr9:44789862..44789881,+p3@Cd3d
Mm9::chr9:44789884..44789917,+p1@Cd3d
Mm9::chr9:44789930..44789947,+p2@Cd3d
Mm9::chr9:44791742..44791746,+p@chr9:44791742..44791746
+
Mm9::chr9:44807204..44807232,-p@chr9:44807204..44807232
-
Mm9::chr9:44807261..44807292,-p@chr9:44807261..44807292
-
Mm9::chr9:44807304..44807340,-p@chr9:44807304..44807340
-
Mm9::chr9:44807366..44807381,-p@chr9:44807366..44807381
-
Mm9::chr9:44807434..44807445,-p@chr9:44807434..44807445
-
Mm9::chr9:44809129..44809162,-p@chr9:44809129..44809162
-
Mm9::chr9:44809185..44809215,-p@chr9:44809185..44809215
-
Mm9::chr9:44810358..44810376,+p@chr9:44810358..44810376
+
Mm9::chr9:44817682..44817728,-p1@Cd3e
Mm9::chr9:44817891..44817909,-p2@Cd3e
Mm9::chr9:44817917..44817930,-p3@Cd3e
Mm9::chr9:44817946..44817959,-p4@Cd3e
Mm9::chrX:12339122..12339166,-p2@Med14
Mm9::chrX:156146525..156146544,+p1@Sh3kbp1
Mm9::chrX:163099550..163099557,+p1@ENSMUST00000135086
Mm9::chrX:34529453..34529474,-p2@Sept6
Mm9::chrX:39855773..39855829,+p1@Sh2d1a


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0001772immunological synapse2.99783538433605e-11
GO:0042110T cell activation7.04819708463535e-09
GO:0045321leukocyte activation8.72590786767768e-09
GO:0001775cell activation1.57848975591422e-08
GO:0046649lymphocyte activation2.96797349047148e-08
GO:0002376immune system process3.83248281841986e-08
GO:0007242intracellular signaling cascade3.83248281841986e-08
GO:0042101T cell receptor complex3.83248281841986e-08
GO:0042105alpha-beta T cell receptor complex8.57599784927289e-07
GO:0051239regulation of multicellular organismal process1.19398090832422e-06
GO:0050852T cell receptor signaling pathway1.8294209328212e-06
GO:0050870positive regulation of T cell activation4.73100989334206e-06
GO:0043235receptor complex4.73100989334206e-06
GO:0006955immune response6.23148382852215e-06
GO:0048518positive regulation of biological process7.09843147316181e-06
GO:0050851antigen receptor-mediated signaling pathway1.14387444260065e-05
GO:0030098lymphocyte differentiation1.88529070359754e-05
GO:0050848regulation of calcium-mediated signaling1.88529070359754e-05
GO:0050850positive regulation of calcium-mediated signaling1.88529070359754e-05
GO:0002429immune response-activating cell surface receptor signaling pathway2.23825675513156e-05
GO:0030217T cell differentiation2.36003365417723e-05
GO:0051251positive regulation of lymphocyte activation2.36003365417723e-05
GO:0002768immune response-regulating cell surface receptor signaling pathway2.62622071547099e-05
GO:0050863regulation of T cell activation2.62622071547099e-05
GO:0009966regulation of signal transduction2.75500539890309e-05
GO:0009967positive regulation of signal transduction2.92357979986028e-05
GO:0002757immune response-activating signal transduction3.05546783946035e-05
GO:0002764immune response-regulating signal transduction3.89219096520578e-05
GO:0045058T cell selection4.04925148963563e-05
GO:0002682regulation of immune system process4.55610779762465e-05
GO:0032943mononuclear cell proliferation5.13953715085872e-05
GO:0046651lymphocyte proliferation5.13953715085872e-05
GO:0051240positive regulation of multicellular organismal process5.23387364811454e-05
GO:0019722calcium-mediated signaling8.54018733502857e-05
GO:0002521leukocyte differentiation8.54018733502857e-05
GO:0051249regulation of lymphocyte activation8.97993411921825e-05
GO:0050865regulation of cell activation0.000107538028930487
GO:0007165signal transduction0.00014426066591897
GO:0005886plasma membrane0.000152434036677986
GO:0042098T cell proliferation0.000176641003652872
GO:0042102positive regulation of T cell proliferation0.0001930012953993
GO:0031325positive regulation of cellular metabolic process0.0001930012953993
GO:0030097hemopoiesis0.0001930012953993
GO:0002684positive regulation of immune system process0.0001930012953993
GO:0050856regulation of T cell receptor signaling pathway0.000196410979729113
GO:0007154cell communication0.00021925579436586
GO:0009893positive regulation of metabolic process0.000282476194491058
GO:0050854regulation of antigen receptor-mediated signaling pathway0.000353971813074002
GO:0050776regulation of immune response0.000353971813074002
GO:0048534hemopoietic or lymphoid organ development0.000371628981410534
GO:0051247positive regulation of protein metabolic process0.000487000525487249
GO:0050671positive regulation of lymphocyte proliferation0.00051006031548629
GO:0032946positive regulation of mononuclear cell proliferation0.00051006031548629
GO:0002520immune system development0.00056422082637471
GO:0019932second-messenger-mediated signaling0.00056422082637471
GO:0002253activation of immune response0.000657411883649913
GO:0045061thymic T cell selection0.000659888924177137
GO:0048522positive regulation of cellular process0.000844700323544027
GO:0042129regulation of T cell proliferation0.000844700323544027
GO:0005515protein binding0.000844700323544027
GO:0050789regulation of biological process0.000844700323544027
GO:0065007biological regulation0.00118977625869821
GO:0008283cell proliferation0.00143484492394102
GO:0003705RNA polymerase II transcription factor activity, enhancer binding0.00153653105332945
GO:0050778positive regulation of immune response0.00162667199622183
GO:0001816cytokine production0.00182568081393974
GO:0032944regulation of mononuclear cell proliferation0.00182568081393974
GO:0005089Rho guanyl-nucleotide exchange factor activity0.00182568081393974
GO:0050670regulation of lymphocyte proliferation0.00182568081393974
GO:0035023regulation of Rho protein signal transduction0.00223165829853142
GO:0005088Ras guanyl-nucleotide exchange factor activity0.00269552029983079
GO:0033077T cell differentiation in the thymus0.00317239499202463
GO:0044459plasma membrane part0.00439932371219049
GO:0042108positive regulation of cytokine biosynthetic process0.00649057593105132
GO:0006357regulation of transcription from RNA polymerase II promoter0.00740243397161587
GO:0045086positive regulation of interleukin-2 biosynthetic process0.00796707338806494
GO:0007266Rho protein signal transduction0.00797609674285202
GO:0005622intracellular0.0081965425153586
GO:0007265Ras protein signal transduction0.010493138724542
GO:0050794regulation of cellular process0.0108992317658478
GO:0045727positive regulation of translation0.0113541057150638
GO:0042127regulation of cell proliferation0.0113541057150638
GO:0007159leukocyte adhesion0.0116484252852234
GO:0005737cytoplasm0.0126565985125951
GO:0006366transcription from RNA polymerase II promoter0.0126565985125951
GO:0044464cell part0.0128456748123895
GO:0005623cell0.0128456748123895
GO:0043170macromolecule metabolic process0.01290639511985
GO:0031328positive regulation of cellular biosynthetic process0.01290639511985
GO:0019222regulation of metabolic process0.0153973630460122
GO:0046578regulation of Ras protein signal transduction0.0155140027921792
GO:0045076regulation of interleukin-2 biosynthetic process0.0180389444757243
GO:0008284positive regulation of cell proliferation0.018096984897661
GO:0042035regulation of cytokine biosynthetic process0.0189258409044981
GO:0005643nuclear pore0.0198257683009723
GO:0005070SH3/SH2 adaptor activity0.0198959906764414
GO:0051092activation of NF-kappaB transcription factor0.0198959906764414
GO:0044424intracellular part0.01994171957689
GO:0009891positive regulation of biosynthetic process0.0212478928141761
GO:0042094interleukin-2 biosynthetic process0.0217609137144639
GO:0000059protein import into nucleus, docking0.0217609137144639
GO:0004697protein kinase C activity0.0217609137144639
GO:0031323regulation of cellular metabolic process0.0225440284046253
GO:0046930pore complex0.0235599913653708
GO:0006468protein amino acid phosphorylation0.0235599913653708
GO:0032623interleukin-2 production0.0238537132630127
GO:0045944positive regulation of transcription from RNA polymerase II promoter0.0256303808209819
GO:0005085guanyl-nucleotide exchange factor activity0.025966892294461
GO:0045580regulation of T cell differentiation0.025966892294461
GO:0001565phorbol ester receptor activity0.025966892294461
GO:0042089cytokine biosynthetic process0.026996997198834
GO:0042107cytokine metabolic process0.0277911690663867
GO:0044453nuclear membrane part0.0277911690663867
GO:0051056regulation of small GTPase mediated signal transduction0.0278540160198996
GO:0043234protein complex0.0283394973162875
GO:0031965nuclear membrane0.0296583651185824
GO:0051091positive regulation of transcription factor activity0.0337772330446337
GO:0009897external side of plasma membrane0.0352124189702825
GO:0050731positive regulation of peptidyl-tyrosine phosphorylation0.0352124189702825
GO:0001920negative regulation of receptor recycling0.0352124189702825
GO:0031045dense core granule0.0352124189702825
GO:0004294tripeptidyl-peptidase II activity0.0352124189702825
GO:0021542dentate gyrus development0.0352124189702825
GO:0050862positive regulation of T cell receptor signaling pathway0.0352124189702825
GO:0030338CMP-N-acetylneuraminate monooxygenase activity0.0352124189702825
GO:0002639positive regulation of immunoglobulin production0.0352124189702825
GO:0032127dense core granule membrane0.0352124189702825
GO:0045937positive regulation of phosphate metabolic process0.0370057851207591
GO:0042327positive regulation of phosphorylation0.0370057851207591
GO:0006793phosphorus metabolic process0.0377934744610867
GO:0006796phosphate metabolic process0.0377934744610867
GO:0016773phosphotransferase activity, alcohol group as acceptor0.0381119084067437
GO:0016310phosphorylation0.0381927530601523
GO:0045619regulation of lymphocyte differentiation0.038891919616813
GO:0051246regulation of protein metabolic process0.039069924265652
GO:0003702RNA polymerase II transcription factor activity0.0427498761853349
GO:0045893positive regulation of transcription, DNA-dependent0.0428345608353504
GO:0003700transcription factor activity0.0432385141556203
GO:0007264small GTPase mediated signal transduction0.0432385141556203
GO:0051090regulation of transcription factor activity0.0432385141556203
GO:0030674protein binding, bridging0.0432385141556203
GO:0001707mesoderm formation0.0432385141556203
GO:0005083small GTPase regulator activity0.0432464818492326
GO:0004672protein kinase activity0.0447916571168891
GO:0048332mesoderm morphogenesis0.0457247249566859
GO:0001934positive regulation of protein amino acid phosphorylation0.0472676852032728
GO:0033240positive regulation of amine metabolic process0.0472676852032728
GO:0045764positive regulation of amino acid metabolic process0.0472676852032728
GO:0005925focal adhesion0.0472676852032728
GO:0001704formation of primary germ layer0.0472676852032728
GO:0042100B cell proliferation0.0472676852032728
GO:0019538protein metabolic process0.0475865655395633



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
lymphoid lineage restricted progenitor cell5.19e-1912
mature alpha-beta T cell2.25e-189
alpha-beta T cell2.25e-189
immature T cell2.25e-189
mature T cell2.25e-189
immature alpha-beta T cell2.25e-189
T cell1.40e-1711
pro-T cell1.40e-1711
lymphocyte2.42e-1713
common lymphoid progenitor2.42e-1713
CD4-positive, alpha-beta T cell1.99e-168
hematopoietic lineage restricted progenitor cell6.12e-1525
nucleate cell1.36e-1316
leukocyte1.23e-1217
nongranular leukocyte1.23e-1217
thymocyte1.96e-126
double negative thymocyte1.96e-126
naive T cell1.96e-126
double-positive, alpha-beta thymocyte1.96e-126
CD4-positive, alpha-beta thymocyte1.96e-126
naive thymus-derived CD4-positive, alpha-beta T cell1.96e-126
DN4 thymocyte1.96e-126
DN1 thymic pro-T cell1.96e-126
DN2 thymocyte1.96e-126
DN3 thymocyte1.96e-126
immature single positive thymocyte1.96e-126
early T lineage precursor1.96e-126
mature CD4 single-positive thymocyte1.96e-126
resting double-positive thymocyte1.96e-126
double-positive blast1.96e-126
CD69-positive double-positive thymocyte1.96e-126
CD69-positive, CD4-positive single-positive thymocyte1.96e-126
CD4-positive, CD8-intermediate double-positive thymocyte1.96e-126
CD24-positive, CD4 single-positive thymocyte1.96e-126
hematopoietic cell7.68e-1132
hematopoietic oligopotent progenitor cell7.68e-1132
hematopoietic stem cell7.68e-1132
angioblastic mesenchymal cell7.68e-1132
hematopoietic multipotent progenitor cell7.68e-1132

Uber Anatomy
Ontology termp-valuen
hemopoietic organ2.48e-3629
immune organ2.48e-3629
thymus6.27e-3323
neck6.27e-3323
respiratory system epithelium6.27e-3323
hemolymphoid system gland6.27e-3323
pharyngeal epithelium6.27e-3323
thymic region6.27e-3323
pharyngeal gland6.27e-3323
entire pharyngeal arch endoderm6.27e-3323
thymus primordium6.27e-3323
early pharyngeal endoderm6.27e-3323
pharynx2.55e-3124
gland of gut2.55e-3124
upper respiratory tract2.55e-3124
chordate pharynx2.55e-3124
pharyngeal arch system2.55e-3124
pharyngeal region of foregut2.55e-3124
respiratory tract7.07e-3041
hematopoietic system1.10e-2945
blood island1.10e-2945
hemolymphoid system1.13e-2948
immune system1.13e-2948
respiratory system5.41e-2942
mixed endoderm/mesoderm-derived structure5.82e-2935
segment of respiratory tract3.26e-2727
organ segment1.03e-1935
craniocervical region5.16e-1936
foregut8.89e-1780
anterior region of body5.00e-1543
endo-epithelium7.37e-1569
lateral plate mesoderm8.28e-1387
gut epithelium1.37e-1055
subdivision of digestive tract1.83e-09114
endocrine gland2.82e-0960
digestive system3.60e-09116
digestive tract3.60e-09116
primitive gut3.60e-09116
endoderm-derived structure6.91e-09118
endoderm6.91e-09118
presumptive endoderm6.91e-09118
gland3.57e-0865
unilaminar epithelium5.65e-0866
primordium1.35e-07134
mesoderm2.63e-07120
mesoderm-derived structure2.63e-07120
presumptive mesoderm2.63e-07120
organ part5.43e-0799
endocrine system6.69e-0772


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.11.35491e-10
MA0004.10.478166
MA0006.10.000834106
MA0007.10.307528
MA0009.10.481254
MA0014.12.91781e-10
MA0017.10.334061
MA0019.10.67883
MA0024.10.347667
MA0025.10.0347463
MA0027.10.839619
MA0028.10.0250576
MA0029.10.0609157
MA0030.10.602073
MA0031.11.50073
MA0038.10.0645122
MA0040.10.0320741
MA0041.11.78143
MA0042.11.385
MA0043.10.00852032
MA0046.10.428171
MA0048.10.628074
MA0050.12.2323
MA0051.10.424946
MA0052.10.0123507
MA0055.10.241593
MA0056.10
MA0057.10.242501
MA0058.10.329702
MA0059.10.220296
MA0060.10.00254971
MA0061.10.115494
MA0063.10
MA0066.10.553924
MA0067.10.0791948
MA0068.10.122624
MA0069.10.150071
MA0070.10.232666
MA0071.10.106919
MA0072.11.41057
MA0073.11.092
MA0074.10.0139697
MA0076.10.142606
MA0077.10.420617
MA0078.10.594374
MA0081.12.49083
MA0083.10.271856
MA0084.10.110204
MA0087.10.0503979
MA0088.10.00820617
MA0089.10
MA0090.10.168604
MA0091.10.570602
MA0092.10.521737
MA0093.10.403893
MA0095.10
MA0098.10
MA0100.10.315471
MA0101.10.0917077
MA0103.11.8552
MA0105.10.00375567
MA0106.10.00689599
MA0107.10.037757
MA0108.20.0633308
MA0109.10
MA0111.10.436468
MA0113.10.0571135
MA0114.10.106409
MA0115.10.867992
MA0116.10.446722
MA0117.10.0584373
MA0119.10.013174
MA0122.10.145131
MA0124.10.301032
MA0125.10.195251
MA0130.10
MA0131.10.124044
MA0132.10
MA0133.10
MA0135.10.106144
MA0136.15.48559
MA0139.10.0615496
MA0140.10.508675
MA0141.10.0845914
MA0142.11.13993
MA0143.11.69309
MA0144.10.82532
MA0145.10.00121222
MA0146.17.61009e-12
MA0147.10.258991
MA0148.10.838466
MA0149.16.59377
MA0062.21.08697
MA0035.20.659403
MA0039.21.42944e-07
MA0138.20.000867434
MA0002.21.71303
MA0137.20.988241
MA0104.20.0662386
MA0047.22.18835
MA0112.20.00766538
MA0065.20.0605416
MA0150.10.00348823
MA0151.10
MA0152.10.0637712
MA0153.10.231513
MA0154.10.100553
MA0155.10.0202833
MA0156.110.8092
MA0157.11.13515
MA0158.10
MA0159.10.890889
MA0160.10.146027
MA0161.10
MA0162.19.28803e-05
MA0163.10.00497909
MA0164.10.204396
MA0080.28.95769
MA0018.20.00723405
MA0099.20.160334
MA0079.20.0886611
MA0102.20.134447
MA0258.10.232663
MA0259.10.00513144
MA0442.10
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