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MCL coexpression mm9:705: Difference between revisions

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{{MCL_coexpression_mm9
{{MCL_coexpression_mm9|coexpression_dpi_cluster_scores_mean=0.0413125779302463,0,0,0,0,0,0,0,0,0.00913378685245542,0,0,0,0.00363974770700186,0,0,0,0,0.00558041721483835,0,0.238078632996428,0,0,0,0,0,0,0,0,0,0,0.0213525904512698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00856562580541553,0.0158173160405417,0.00771606661507038,0.0193109477544623,0,0,0,0,0,0,0,0.299788915330687,0.32632317160587,0.40752385434121,0,0.0276299728348189,0,0,0,0.0227619479210974,0.0282409176368606,0.194116874714804,0.180019315164046,0.161493081204136,0.721667371943916,0.764077696361134,0.370631667476957,0.288693030401905,0.38473856377953,0.440243892254422,0.471711048069974,0.467757928737153,0.376786868092947,0.39621026248726,0.34898903637282,0.387899174965879,0.454008326829662,0.548960444542867,0.792050848862899,0.821094149521709,0.569340459739721,0.0124649471466373,0.0248815885525971,0,0,0.0225301871178984,0,0,0,0.0538941176778936,0,0,0,0.0260843438227516,0,0,0,0,0,0,0.0479139191466899,0,0,0.00694776635602275,0,0,0.006097065795378,0.00482820047261801,0,0,0.00586534975690397,0,0.00651189800845078,0,0,0,0.0311708010110251,0.0234536509078697,0,0,0,0,0.657601994852676,0.478168192970802,0.851914059888905,0.695311048728593,0.70299465379425,0.439436412325554,0.562895248518398,0.0406894175632006,0.0101847058588194,0,0.0295484575659054,0.0153578296328654,0.0734208237468567,0.111285660671699,0.0586515464580421,0.0530871818051706,0.0477984203515466,0.0361653252129159,0.0598863169053135,0,0.0139316077492302,0.0211167814845344,0.00860734338295156,0,0.012977112683364,0.0149700657682213,0.0145528461145601,0,0,0,0.0655247776118166,0.0421880606015377,0.0278824523977366,0.0553772277000718,0.025213838724749,0.0318036146903788,0.00907988888537607,0.0103212884397651,0.00479619276176895,0.00661618130246221,0,0,0.00592603993571966,0.00861996515928926,0.0164076302217041,1.07314496978091,0.871777090313775,0,0,0.0596142377558359,0.0419237942724907,0.0301401845432056,0.0382644130420398,0.0324671338850295,0.0406317716283039,0,0.0286006617733086,0.017686373673239,0.0145480126286698,0.00773548534010084,0,0,0.00788703512227347,0,0.0174975780842544,0,0.00805006992779881,0,0.00294389011296462,0.00266298923127834,0,0,0.00505333231410966,0,0,0.00779341159210384,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00736278867910527,0.0494037880796484,0.0131133271646061,0,0,0.00672592169170953,0,0.00774164737207147,0.00635717028550276,0,0,0.00659019793256198,0,0,0,0,0,0,0.566070063757368,0.491326071130984,0,0,0.0354498912916905,0.0250634044192069,0.0498893905636353,0.0384401507454062,0.0604465251869409,0.0194834203794845,0.0666826399344684,0.0653894331637568,0.0763997401054362,0.867397473333893,0.00576433181427177,0.0389352261711596,0.0345591550560168,0.00663147875126409,0,0.0709886256819242,0.0320098435669821,0.00750375819757342,0.0201562011772837,0.0116420155980149,0.0180944521652268,0.0134665885471472,0,0,0,0,0,0.0375144810069972,0.0152760120113514,0.0337356961586166,0.0746748637094249,0.11214881487587,0.112966184209062,0.0863530657125828,0,0,0.00865478886078475,0,0.00650059127791652,0.00494606362651129,0,0,0.0111087966368681,0.589793841221416,0,0.024445980321101,0.00737896374598673,0,0,0,0,0,0,0,0.0634382243471436,0.0532148226522261,0.0490463249982914,0.0151730312771305,0.015737368738825,0.0147550511820338,0.0066440322267935,0,0,0,0.0194151474984939,0,0,0.0353914717959976,0.0519218555825258,0.0507397329688513,0.0450564199387711,0.0381869971916467,0.00433069931089932,0,0,0,0.0227981949005438,0.00424616899933645,0,0,0,0,0,0,0,0,0,0,0.00480053095083702,0,0,0,0,0,0,0.0135547100918658,0.00843504501108034,0,0.740398270611556,0.719736170262248,0.659825840093646,0.623834124500838,0.529164824121161,0.421999985569715,0.52893034530314,0.471068880796518,0.53741496193719,0.545922177335528,0.0430857158788853,0.0546452575077123,0.061105091678506,0.140907759748109,0.160988621945448,0.161501426384122,0.220821759912939,0.230165516395336,0.271256305178512,0.220300960032826,0.271764017572754,0.24691175143447,0.211823160454892,0.252177190174922,0.240205871021998,0.203666301034433,0.236439601933639,0.226350743394808,0.21973142479778,0.235073387415543,0.141957556397544,0.221706794357052,0.166840934624501,0.221904414628653,0.222599290006724,0.204946657235718,0.209713608885135,0.181349835974569,0.206488683475742,0.191625666313612,0.227187373521127,0.223915482798793,0.164161271443771,0.231942943134988,0.185021968671109,0.305533441873223,0.165995991973127,0.221722490689395,0.118789785079354,0.088898867420966,0.0695440467481284|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224841878476219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206002197103771,0.313441563167376,0.452003948422889,0,0,0,0,0,0,0,0.181399941482266,0.163915146048275,0.152487072037699,0.734456635513491,0.706279762944587,0.370586876635929,0.281017642843789,0.368101916609926,0.413961641748644,0.369187313956834,0.407723918502647,0.365275068003305,0.312092266416601,0.182104477852721,0.40340555064621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defense response;0.0190246674828766;110886!GO:0001662;behavioral fear response;0.0190246674828766;110886!GO:0008306;associative learning;0.0190246674828766;110886!GO:0042596;fear response;0.0190246674828766;110886!GO:0005887;integral to plasma membrane;0.0190246674828766;110886,15550!GO:0031226;intrinsic to plasma membrane;0.0190246674828766;110886,15550!GO:0007214;gamma-aminobutyric acid signaling pathway;0.0190246674828766;110886!GO:0033555;multicellular organismal response to stress;0.0194664872195928;110886!GO:0004890;GABA-A receptor activity;0.0194664872195928;110886!GO:0016917;GABA receptor activity;0.0196206054480142;110886!GO:0007612;learning;0.0247101592123163;110886!GO:0043168;anion binding;0.0247101592123163;110886!GO:0031404;chloride ion binding;0.0247101592123163;110886!GO:0005254;chloride channel activity;0.0247101592123163;110886!GO:0044459;plasma membrane part;0.0247101592123163;110886,15550!GO:0006821;chloride transport;0.0247101592123163;110886!GO:0005253;anion channel activity;0.0247101592123163;110886!GO:0005230;extracellular ligand-gated ion channel activity;0.0250514682381132;110886!GO:0007611;learning and/or memory;0.0250514682381132;110886!GO:0015276;ligand-gated ion channel activity;0.0262664065537355;110886!GO:0022834;ligand-gated channel activity;0.0262664065537355;110886!GO:0030594;neurotransmitter receptor activity;0.0262664065537355;110886!GO:0042165;neurotransmitter binding;0.0262664065537355;110886!GO:0007186;G-protein coupled receptor protein signaling pathway;0.0262664065537355;110886,15550!GO:0005886;plasma membrane;0.0274920998339277;110886,15550!GO:0045211;postsynaptic membrane;0.0279648895808937;110886!GO:0004888;transmembrane receptor activity;0.0279648895808937;110886,15550!GO:0008509;anion transmembrane transporter activity;0.0279648895808937;110886!GO:0044456;synapse part;0.0291630589351352;110886!GO:0015698;inorganic anion transport;0.0326006029880489;110886!GO:0006820;anion transport;0.0362553679268739;110886!GO:0007166;cell surface receptor linked signal transduction;0.0362553679268739;110886,15550!GO:0004872;receptor activity;0.0447147772813943;110886,15550!GO:0004871;signal transducer activity;0.0487579520404472;110886,15550!GO:0060089;molecular transducer 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|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224841878476219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206002197103771,0.313441563167376,0.452003948422889,0,0,0,0,0,0,0,0.181399941482266,0.163915146048275,0.152487072037699,0.734456635513491,0.706279762944587,0.370586876635929,0.281017642843789,0.368101916609926,0.413961641748644,0.369187313956834,0.407723918502647,0.365275068003305,0.312092266416601,0.182104477852721,0.403405550646212,0.378471014187356,0.526412435270307,0.744228221986595,0.820471505207886,0.492601517442314,0,0.0316393102377815,0,0,0,0,0,0,0.0570741246689917,0,0,0,0,0,0,0,0,0,0,0.0469568706916304,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.583690238961472,0.399517605699759,0.854734855489449,0.641654895381396,0.660867033365574,0.388404126133631,0.514195937342107,0,0,0,0,0,0,0.0719048733411253,0,0.0285860945550467,0.0261764406050477,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03644916233133,0.833099439676401,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.45411273206681,0.369464925563345,0,0,0,0,0,0,0,0,0,0,0,0.821049686832973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0712812415377886,0.0948573962131381,0.057716207064756,0,0,0,0,0,0,0,0,0,0.495685649775718,0,0,0,0,0,0,0,0,0,0,0.0318857800356453,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0263777085807213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.776481685995589,0.686993434611435,0.697003168884831,0.629587655722288,0.510366177910799,0.514040340140897,0.480735069848811,0.441671912595038,0.577410035209895,0.461076938665109,0,0,0.034229042449623,0.0945084131504676,0.0826465040380816,0.073294297058821,0.123437230911067,0.149856261570464,0.215330413983256,0.17765030293269,0.274831160334435,0.134901778521757,0.106359930872542,0.188614086620211,0.172580859303431,0.169172763866184,0.165403796547116,0.141706336142815,0.14986111676545,0.201068050435521,0.128033729919821,0.182447658702885,0.092873634605593,0.157166310227119,0.121187642886447,0.126604887871452,0.119237819607524,0.18359421108913,0.126387342143306,0.193442483447008,0.150442929598185,0.201677520895557,0.148982201447044,0.209447282040344,0.0766064454112358,0.271881217361352,0.16109914401847,0.216063761676531,0.0380084440794953,0.0432851562487011,0
|gostat_on_MCL_coexpression=GO:0002209;behavioral defense response;0.0190246674828766;110886!GO:0001662;behavioral fear response;0.0190246674828766;110886!GO:0008306;associative learning;0.0190246674828766;110886!GO:0042596;fear response;0.0190246674828766;110886!GO:0005887;integral to plasma membrane;0.0190246674828766;110886,15550!GO:0031226;intrinsic to plasma membrane;0.0190246674828766;110886,15550!GO:0007214;gamma-aminobutyric acid signaling pathway;0.0190246674828766;110886!GO:0033555;multicellular organismal response to stress;0.0194664872195928;110886!GO:0004890;GABA-A receptor activity;0.0194664872195928;110886!GO:0016917;GABA receptor activity;0.0196206054480142;110886!GO:0007612;learning;0.0247101592123163;110886!GO:0043168;anion binding;0.0247101592123163;110886!GO:0031404;chloride ion binding;0.0247101592123163;110886!GO:0005254;chloride channel activity;0.0247101592123163;110886!GO:0044459;plasma membrane part;0.0247101592123163;110886,15550!GO:0006821;chloride transport;0.0247101592123163;110886!GO:0005253;anion channel activity;0.0247101592123163;110886!GO:0005230;extracellular ligand-gated ion channel activity;0.0250514682381132;110886!GO:0007611;learning and/or memory;0.0250514682381132;110886!GO:0015276;ligand-gated ion channel activity;0.0262664065537355;110886!GO:0022834;ligand-gated channel activity;0.0262664065537355;110886!GO:0030594;neurotransmitter receptor activity;0.0262664065537355;110886!GO:0042165;neurotransmitter binding;0.0262664065537355;110886!GO:0007186;G-protein coupled receptor protein signaling pathway;0.0262664065537355;110886,15550!GO:0005886;plasma membrane;0.0274920998339277;110886,15550!GO:0045211;postsynaptic membrane;0.0279648895808937;110886!GO:0004888;transmembrane receptor activity;0.0279648895808937;110886,15550!GO:0008509;anion transmembrane transporter activity;0.0279648895808937;110886!GO:0044456;synapse part;0.0291630589351352;110886!GO:0015698;inorganic anion transport;0.0326006029880489;110886!GO:0006820;anion transport;0.0362553679268739;110886!GO:0007166;cell surface receptor linked signal transduction;0.0362553679268739;110886,15550!GO:0004872;receptor activity;0.0447147772813943;110886,15550!GO:0004871;signal transducer activity;0.0487579520404472;110886,15550!GO:0060089;molecular transducer activity;0.0487579520404472;110886,15550!
|ontology_enrichment_celltype=CL:0000117!2.68e-21!23;CL:0000337!2.68e-21!23;CL:0000540!2.07e-12!33;CL:0000047!2.07e-12!33;CL:0000031!2.07e-12!33;CL:0000404!2.07e-12!33;CL:0000393!2.32e-09!39;CL:0000211!2.32e-09!39;CL:0002319!1.58e-08!43;CL:0000221!3.58e-08!44;CL:0000133!3.58e-08!44
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000073!2.19e-30!54;UBERON:0002020!5.08e-30!34;UBERON:0001049!1.50e-28!52;UBERON:0005068!1.50e-28!52;UBERON:0006241!1.50e-28!52;UBERON:0007135!1.50e-28!52;UBERON:0001017!2.24e-25!73;UBERON:0001016!2.90e-25!75;UBERON:0003528!3.45e-24!29;UBERON:0002791!3.45e-24!29;UBERON:0001893!3.45e-24!29;UBERON:0003080!1.64e-23!40;UBERON:0002346!1.67e-23!64;UBERON:0003075!1.67e-23!64;UBERON:0007284!1.67e-23!64;UBERON:0000955!3.43e-23!47;UBERON:0006238!3.43e-23!47;UBERON:0002780!1.86e-22!39;UBERON:0001890!1.86e-22!39;UBERON:0006240!1.86e-22!39;UBERON:0002616!4.43e-22!46;UBERON:0003056!3.57e-20!49;UBERON:0004121!8.57e-19!95;UBERON:0000924!8.57e-19!95;UBERON:0006601!8.57e-19!95;UBERON:0010371!9.56e-19!73;UBERON:0000956!7.98e-17!21;UBERON:0001869!7.98e-17!21;UBERON:0000203!7.98e-17!21;UBERON:0002619!6.28e-14!17;UBERON:0010314!6.34e-12!92;UBERON:0002021!1.04e-11!10;UBERON:0000411!1.04e-11!10;UBERON:0001950!1.04e-11!10;UBERON:0002420!1.75e-08!8;UBERON:0007245!1.75e-08!8;UBERON:0010009!1.75e-08!8;UBERON:0010011!1.75e-08!8;UBERON:0000454!1.75e-08!8;UBERON:0002240!5.58e-08!6;UBERON:0005174!5.58e-08!6;UBERON:0001137!5.58e-08!6;UBERON:0001948!5.16e-07!5;UBERON:0002315!5.16e-07!5
|tfbs_overrepresentation_for_novel_motifs=0.321524,0.883225,2.23939,0.360062,0.200163,0.373426,2.02295,0.392928,0.411053,0.771958,1.071,0.447169,0.393382,1.18563,0.214197,0,0.656089,0.564478,0.736624,1.19931,0.26524,0.60924,0.469335,0.198877,4.09758,2.14909,0.107695,1.01819,1.93553,0.572447,0.379806,0.754912,0.191698,0.31333,1.1554,0.00653988,1.63646,1.12869,0.963289,0.143746,0.196807,2.66022,0.0320468,0.215898,2.56024,0.923221,1.41649,1.05036,0.255625,0.241306,0.639101,0.522137,0.0747297,0.894161,0.911367,0.47699,1.28651,1.11002,1.12723,0.47505,2.91972,0.531188,0.140453,0.628155,0.487593,0.667546,1.04613,1.3932,0.730718,1.24673,0.76885,1.3071,3.64146,0.944464,8.69662,1.04341,0.313198,0.567793,0.718494,0.268962,0.406536,0.673009,0.529804,0.119727,0.830765,5.91308,0.0149522,0.271714,0.583509,1.55487,1.11522,0.835661,0.767462,0.592123,2.1688,0.149272,0.122617,0.770215,2.41984,0.50528,0.184103,1.78319,0.87698,0.639679,0.638654,0.3842,0.696857,0.403887,0.750985,4.75722,0.845852,2.03846,0.26996,1.08155,1.12221,0.5687,6.60027,1.69868,0.657356,0.181004,0.949798,0.607824,0.498153,0.566919,1.17594,0.722111,0.466292,0.760818,1.04463,1.12828,0.86025,0.353344,1.01535,0.48999,1.14365,0.0358067,0.329172,0.385921,1.09487,1.92247,1.5231,1.0508,0.509663,0.765172,0.632358,1.00091,0.581788,1.88287,0.331322,0.201635,0.0806411,2.22095,0.895708,0.46758,2.12486,0.976367,0.523103,0.224422,0.319291,1.57707,1.1043,0.829923,0.722546,0.841258,0.629147,0.482049,0.53929,1.97965,0.809881
|tfbs_overrepresentation_jaspar=MA0003.1;3.03885,MA0004.1;0.360508,MA0006.1;0.210471,MA0007.1;0.346734,MA0009.1;0.780842,MA0014.1;0.342463,MA0017.1;0.233089,MA0019.1;0.603066,MA0024.1;0.737933,MA0025.1;1.01089,MA0027.1;2.42079,MA0028.1;0.219287,MA0029.1;0.716673,MA0030.1;0.723093,MA0031.1;0.688336,MA0038.1;0.496338,MA0040.1;0.79313,MA0041.1;0.291712,MA0042.1;0.76637,MA0043.1;0.875991,MA0046.1;0.816137,MA0048.1;1.31676,MA0050.1;0.396459,MA0051.1;0.504875,MA0052.1;0.801048,MA0055.1;1.21025,MA0056.1;0,MA0057.1;0.216209,MA0058.1;0.273976,MA0059.1;0.28489,MA0060.1;0.145297,MA0061.1;1.54987,MA0063.1;0,MA0066.1;0.485868,MA0067.1;1.12095,MA0068.1;0.0621035,MA0069.1;0.801381,MA0070.1;0.791856,MA0071.1;0.395679,MA0072.1;0.783532,MA0073.1;0.0100778,MA0074.1;0.451832,MA0076.1;0.249619,MA0077.1;0.762273,MA0078.1;0.536502,MA0081.1;0.824359,MA0083.1;0.875209,MA0084.1;1.44691,MA0087.1;0.832758,MA0088.1;0.0379749,MA0089.1;0,MA0090.1;0.329158,MA0091.1;0.372635,MA0092.1;0.329444,MA0093.1;0.226349,MA0095.1;0,MA0098.1;0,MA0100.1;1.96362,MA0101.1;1.44787,MA0103.1;0.242398,MA0105.1;0.0911942,MA0106.1;0.543967,MA0107.1;1.24141,MA0108.2;0.625209,MA0109.1;0,MA0111.1;0.342068,MA0113.1;0.516916,MA0114.1;0.500166,MA0115.1;0.878749,MA0116.1;0.604438,MA0117.1;0.846964,MA0119.1;0.796817,MA0122.1;0.866511,MA0124.1;1.06819,MA0125.1;0.994853,MA0130.1;0,MA0131.1;0.598671,MA0132.1;0,MA0133.1;0,MA0135.1;0.911905,MA0136.1;0.470672,MA0139.1;2.47978,MA0140.1;0.440804,MA0141.1;0.259554,MA0142.1;0.674191,MA0143.1;0.53259,MA0144.1;0.506239,MA0145.1;0.664015,MA0146.1;1.62155,MA0147.1;0.179496,MA0148.1;0.375491,MA0149.1;0.2978,MA0062.2;0.649383,MA0035.2;0.44524,MA0039.2;0.0609996,MA0138.2;0.590987,MA0002.2;0.391079,MA0137.2;0.257017,MA0104.2;0.134457,MA0047.2;0.495607,MA0112.2;0.163154,MA0065.2;0.0424448,MA0150.1;0.346631,MA0151.1;0,MA0152.1;0.495709,MA0153.1;0.92832,MA0154.1;0.232525,MA0155.1;1.12565,MA0156.1;0.248865,MA0157.1;0.642984,MA0158.1;0,MA0159.1;0.187774,MA0160.1;0.378276,MA0161.1;0,MA0162.1;0.134999,MA0163.1;3.07342,MA0164.1;0.471016,MA0080.2;0.237846,MA0018.2;0.480226,MA0099.2;0.584892,MA0079.2;0.340295,MA0102.2;1.49914,MA0258.1;0.156336,MA0259.1;0.170828,MA0442.1;0
}}

Latest revision as of 15:45, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr11:16157637..16157652,+p4@Vstm2a
Mm9::chr13:106234341..106234351,+p@chr13:106234341..106234351
+
Mm9::chr14:112073980..112074036,-p@chr14:112073980..112074036
-
Mm9::chr7:64764749..64764765,-p@chr7:64764749..64764765
-
Mm9::chr7:64764767..64764780,-p@chr7:64764767..64764780
-
Mm9::chr7:64764781..64764795,-p@chr7:64764781..64764795
-
Mm9::chr7:64764809..64764823,-p@chr7:64764809..64764823
-
Mm9::chr7:64765286..64765346,-p1@Gabra5
Mm9::chr7:64765354..64765363,-p3@Gabra5
Mm9::chr7:64765365..64765426,-p2@Gabra5


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0002209behavioral defense response0.0190246674828766
GO:0001662behavioral fear response0.0190246674828766
GO:0008306associative learning0.0190246674828766
GO:0042596fear response0.0190246674828766
GO:0005887integral to plasma membrane0.0190246674828766
GO:0031226intrinsic to plasma membrane0.0190246674828766
GO:0007214gamma-aminobutyric acid signaling pathway0.0190246674828766
GO:0033555multicellular organismal response to stress0.0194664872195928
GO:0004890GABA-A receptor activity0.0194664872195928
GO:0016917GABA receptor activity0.0196206054480142
GO:0007612learning0.0247101592123163
GO:0043168anion binding0.0247101592123163
GO:0031404chloride ion binding0.0247101592123163
GO:0005254chloride channel activity0.0247101592123163
GO:0044459plasma membrane part0.0247101592123163
GO:0006821chloride transport0.0247101592123163
GO:0005253anion channel activity0.0247101592123163
GO:0005230extracellular ligand-gated ion channel activity0.0250514682381132
GO:0007611learning and/or memory0.0250514682381132
GO:0015276ligand-gated ion channel activity0.0262664065537355
GO:0022834ligand-gated channel activity0.0262664065537355
GO:0030594neurotransmitter receptor activity0.0262664065537355
GO:0042165neurotransmitter binding0.0262664065537355
GO:0007186G-protein coupled receptor protein signaling pathway0.0262664065537355
GO:0005886plasma membrane0.0274920998339277
GO:0045211postsynaptic membrane0.0279648895808937
GO:0004888transmembrane receptor activity0.0279648895808937
GO:0008509anion transmembrane transporter activity0.0279648895808937
GO:0044456synapse part0.0291630589351352
GO:0015698inorganic anion transport0.0326006029880489
GO:0006820anion transport0.0362553679268739
GO:0007166cell surface receptor linked signal transduction0.0362553679268739
GO:0004872receptor activity0.0447147772813943
GO:0004871signal transducer activity0.0487579520404472
GO:0060089molecular transducer activity0.0487579520404472



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
CNS neuron (sensu Vertebrata)2.68e-2123
neuroblast (sensu Vertebrata)2.68e-2123
neuron2.07e-1233
neuronal stem cell2.07e-1233
neuroblast2.07e-1233
electrically signaling cell2.07e-1233
electrically responsive cell2.32e-0939
electrically active cell2.32e-0939
neural cell1.58e-0843
ectodermal cell3.58e-0844
neurectodermal cell3.58e-0844

Uber Anatomy
Ontology termp-valuen
regional part of nervous system2.19e-3054
gray matter5.08e-3034
neural tube1.50e-2852
neural rod1.50e-2852
future spinal cord1.50e-2852
neural keel1.50e-2852
central nervous system2.24e-2573
nervous system2.90e-2575
brain grey matter3.45e-2429
regional part of telencephalon3.45e-2429
telencephalon3.45e-2429
anterior neural tube1.64e-2340
neurectoderm1.67e-2364
neural plate1.67e-2364
presumptive neural plate1.67e-2364
brain3.43e-2347
future brain3.43e-2347
regional part of forebrain1.86e-2239
forebrain1.86e-2239
future forebrain1.86e-2239
regional part of brain4.43e-2246
pre-chordal neural plate3.57e-2049
ectoderm-derived structure8.57e-1995
ectoderm8.57e-1995
presumptive ectoderm8.57e-1995
ecto-epithelium9.56e-1973
cerebral cortex7.98e-1721
cerebral hemisphere7.98e-1721
pallium7.98e-1721
regional part of cerebral cortex6.28e-1417
structure with developmental contribution from neural crest6.34e-1292
occipital lobe1.04e-1110
visual cortex1.04e-1110
neocortex1.04e-1110
basal ganglion1.75e-088
nuclear complex of neuraxis1.75e-088
aggregate regional part of brain1.75e-088
collection of basal ganglia1.75e-088
cerebral subcortex1.75e-088
spinal cord5.58e-086
dorsal region element5.58e-086
dorsum5.58e-086
regional part of spinal cord5.16e-075
gray matter of spinal cord5.16e-075


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.13.03885
MA0004.10.360508
MA0006.10.210471
MA0007.10.346734
MA0009.10.780842
MA0014.10.342463
MA0017.10.233089
MA0019.10.603066
MA0024.10.737933
MA0025.11.01089
MA0027.12.42079
MA0028.10.219287
MA0029.10.716673
MA0030.10.723093
MA0031.10.688336
MA0038.10.496338
MA0040.10.79313
MA0041.10.291712
MA0042.10.76637
MA0043.10.875991
MA0046.10.816137
MA0048.11.31676
MA0050.10.396459
MA0051.10.504875
MA0052.10.801048
MA0055.11.21025
MA0056.10
MA0057.10.216209
MA0058.10.273976
MA0059.10.28489
MA0060.10.145297
MA0061.11.54987
MA0063.10
MA0066.10.485868
MA0067.11.12095
MA0068.10.0621035
MA0069.10.801381
MA0070.10.791856
MA0071.10.395679
MA0072.10.783532
MA0073.10.0100778
MA0074.10.451832
MA0076.10.249619
MA0077.10.762273
MA0078.10.536502
MA0081.10.824359
MA0083.10.875209
MA0084.11.44691
MA0087.10.832758
MA0088.10.0379749
MA0089.10
MA0090.10.329158
MA0091.10.372635
MA0092.10.329444
MA0093.10.226349
MA0095.10
MA0098.10
MA0100.11.96362
MA0101.11.44787
MA0103.10.242398
MA0105.10.0911942
MA0106.10.543967
MA0107.11.24141
MA0108.20.625209
MA0109.10
MA0111.10.342068
MA0113.10.516916
MA0114.10.500166
MA0115.10.878749
MA0116.10.604438
MA0117.10.846964
MA0119.10.796817
MA0122.10.866511
MA0124.11.06819
MA0125.10.994853
MA0130.10
MA0131.10.598671
MA0132.10
MA0133.10
MA0135.10.911905
MA0136.10.470672
MA0139.12.47978
MA0140.10.440804
MA0141.10.259554
MA0142.10.674191
MA0143.10.53259
MA0144.10.506239
MA0145.10.664015
MA0146.11.62155
MA0147.10.179496
MA0148.10.375491
MA0149.10.2978
MA0062.20.649383
MA0035.20.44524
MA0039.20.0609996
MA0138.20.590987
MA0002.20.391079
MA0137.20.257017
MA0104.20.134457
MA0047.20.495607
MA0112.20.163154
MA0065.20.0424448
MA0150.10.346631
MA0151.10
MA0152.10.495709
MA0153.10.92832
MA0154.10.232525
MA0155.11.12565
MA0156.10.248865
MA0157.10.642984
MA0158.10
MA0159.10.187774
MA0160.10.378276
MA0161.10
MA0162.10.134999
MA0163.13.07342
MA0164.10.471016
MA0080.20.237846
MA0018.20.480226
MA0099.20.584892
MA0079.20.340295
MA0102.21.49914
MA0258.10.156336
MA0259.10.170828
MA0442.10
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