FFCP PHASE1:Hg19::chr11:64110458..64110478,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding|HGNC=NA|TSSclassifier=S|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C11|description=CAGE_peak_at_chr11:64110458..64110478,+|id=chr11:64110458..64110478,+|ontology_enrichment_celltype=CL:0002076!5.24e-07!43|ontology_enrichment_celltype_v019=CL:0002336;9.48e-18;1!CL:0002261;9.48e-18;1!CL:0002170;9.48e-18;1!CL:0000575;1.51e-09;2!CL:0002166;6.50e-07;3!CL:0000307;8.86e-07;3!CL:0002621;8.86e-07;3|ontology_enrichment_celltype_v019_2=CL:0002336,1.03e-17,1;CL:0002261,1.03e-17,1;CL:0002170,1.03e-17,1;CL:0000575,1.71e-09,2;CL:0002166,6.50e-07,3|ontology_enrichment_development_v019=UBERON:0006215;6.83e-51;3!CL:0000377;8.86e-07;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000955!6.11e-17!69;UBERON:0006238!6.11e-17!69;UBERON:0001049!6.79e-17!57;UBERON:0005068!6.79e-17!57;UBERON:0006241!6.79e-17!57;UBERON:0007135!6.79e-17!57;UBERON:0000033!7.24e-17!123;UBERON:0004121!1.73e-16!169;UBERON:0002616!4.70e-16!59;UBERON:0007023!5.15e-16!115;UBERON:0000924!9.08e-16!173;UBERON:0006601!9.08e-16!173;UBERON:0003075!1.58e-15!86;UBERON:0007284!1.58e-15!86;UBERON:0000153!1.65e-15!129;UBERON:0007811!1.65e-15!129;UBERON:0000073!1.42e-14!94;UBERON:0001016!1.42e-14!94;UBERON:0002346!2.09e-14!90;UBERON:0001017!4.32e-14!82;UBERON:0005743!5.91e-14!86;UBERON:0002780!5.16e-13!41;UBERON:0001890!5.16e-13!41;UBERON:0006240!5.16e-13!41;UBERON:0003080!1.42e-12!42;UBERON:0001893!1.40e-11!34;UBERON:0003056!6.36e-11!61;UBERON:0002791!9.40e-11!33;UBERON:0002020!1.73e-10!34;UBERON:0003528!1.73e-10!34;UBERON:0001869!8.95e-10!32;UBERON:0002619!7.76e-09!22;UBERON:0001950!3.68e-08!20;UBERON:0000064!5.71e-08!219;UBERON:0000475!6.22e-08!365;UBERON:0000956!1.75e-07!25;UBERON:0000203!1.75e-07!25;UBERON:0000062!2.01e-07!511;UBERON:0004733!2.24e-07!12;UBERON:0002028!2.24e-07!12;UBERON:0007277!2.24e-07!12;UBERON:0000200!2.59e-07!6;UBERON:0000481!5.01e-07!347|ontology_enrichment_uberon_v019=UBERON:0002037;7.20e-26;6!UBERON:0004733;1.27e-22;12!UBERON:0002028;1.27e-22;12!UBERON:0004732;6.44e-21;13!UBERON:0002680;1.72e-17;9!UBERON:0001895;1.72e-17;9!UBERON:0002702;1.51e-09;2!UBERON:0000073;5.86e-08;53!UBERON:0002616;5.86e-08;53!UBERON:0001896;8.86e-07;3!UBERON:0001870;8.86e-07;3!UBERON:0001949;8.86e-07;3!UBERON:0005290;8.86e-07;3|ontology_enrichment_uberon_v019_2=UBERON:0002037,7.20e-26,6;UBERON:0006215,7.20e-26,6;UBERON:0004733,1.04e-22,12;UBERON:0002028,1.04e-22,12;UBERON:0007277,1.04e-22,12;UBERON:0004732,5.39e-21,13;UBERON:0003076,2.99e-18,15;UBERON:0003057,2.99e-18,15;UBERON:0002680,1.72e-17,9;UBERON:0001895,1.72e-17,9;UBERON:0010092,1.72e-17,9;UBERON:0000073,5.81e-11,53;UBERON:0002616,5.81e-11,53;UBERON:0001049,2.25e-10,56;UBERON:0005068,2.25e-10,56;UBERON:0006241,2.25e-10,56;UBERON:0007135,2.25e-10,56;UBERON:0002702,1.22e-09,2;UBERON:0010371,1.48e-09,104;UBERON:0003075,1.93e-09,82;UBERON:0007284,1.93e-09,82;UBERON:0002346,5.49e-09,86;UBERON:0000955,2.10e-08,68;UBERON:0006238,2.10e-08,68;UBERON:0010314,1.93e-07,132;UBERON:0001017,4.80e-07,81;UBERON:0004121,5.50e-07,171;UBERON:0000924,5.50e-07,171;UBERON:0006601,5.50e-07,171;UBERON:0001896,7.28e-07,3;UBERON:0005290,7.28e-07,3;UBERON:0010096,7.28e-07,3;UBERON:0001870,7.70e-07,3|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261958150995425,1.09288586487763,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201504196455281,0,0.57978255948989,1.09098448236334,0.286804595389004,0.243947412259191,0.397589304964456,0.232387885739037,0.310983165046111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439001141634502,0,0.301586917234893,1.38882667737794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.69560682037491,0.850650583454319,0,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0.107420244868274,0.145016693914229,0,0,0,0,0.510450849978337,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0.670302275535787,1.08890984861323,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.962479855263359,0,0,0,0,0,0,0,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121360521749513,0,0,0.71623345421307,0,0,0,0.562677665642051,0,0,0.422250816255987,0,0,0.251932747854276,0.306806047506464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.72371686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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=NA | |||
|TSSclassifier=S | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C11 | |||
|description=CAGE_peak_at_chr11:64110458..64110478,+ | |||
|id=chr11:64110458..64110478,+ | |||
|ontology_enrichment_celltype=CL:0002076!5.24e-07!43 | |||
|ontology_enrichment_celltype_v019=CL:0002336;9.48e-18;1!CL:0002261;9.48e-18;1!CL:0002170;9.48e-18;1!CL:0000575;1.51e-09;2!CL:0002166;6.50e-07;3!CL:0000307;8.86e-07;3!CL:0002621;8.86e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002336,1.03e-17,1;CL:0002261,1.03e-17,1;CL:0002170,1.03e-17,1;CL:0000575,1.71e-09,2;CL:0002166,6.50e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0006215;6.83e-51;3!CL:0000377;8.86e-07;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000955!6.11e-17!69;UBERON:0006238!6.11e-17!69;UBERON:0001049!6.79e-17!57;UBERON:0005068!6.79e-17!57;UBERON:0006241!6.79e-17!57;UBERON:0007135!6.79e-17!57;UBERON:0000033!7.24e-17!123;UBERON:0004121!1.73e-16!169;UBERON:0002616!4.70e-16!59;UBERON:0007023!5.15e-16!115;UBERON:0000924!9.08e-16!173;UBERON:0006601!9.08e-16!173;UBERON:0003075!1.58e-15!86;UBERON:0007284!1.58e-15!86;UBERON:0000153!1.65e-15!129;UBERON:0007811!1.65e-15!129;UBERON:0000073!1.42e-14!94;UBERON:0001016!1.42e-14!94;UBERON:0002346!2.09e-14!90;UBERON:0001017!4.32e-14!82;UBERON:0005743!5.91e-14!86;UBERON:0002780!5.16e-13!41;UBERON:0001890!5.16e-13!41;UBERON:0006240!5.16e-13!41;UBERON:0003080!1.42e-12!42;UBERON:0001893!1.40e-11!34;UBERON:0003056!6.36e-11!61;UBERON:0002791!9.40e-11!33;UBERON:0002020!1.73e-10!34;UBERON:0003528!1.73e-10!34;UBERON:0001869!8.95e-10!32;UBERON:0002619!7.76e-09!22;UBERON:0001950!3.68e-08!20;UBERON:0000064!5.71e-08!219;UBERON:0000475!6.22e-08!365;UBERON:0000956!1.75e-07!25;UBERON:0000203!1.75e-07!25;UBERON:0000062!2.01e-07!511;UBERON:0004733!2.24e-07!12;UBERON:0002028!2.24e-07!12;UBERON:0007277!2.24e-07!12;UBERON:0000200!2.59e-07!6;UBERON:0000481!5.01e-07!347 | |||
|ontology_enrichment_uberon_v019=UBERON:0002037;7.20e-26;6!UBERON:0004733;1.27e-22;12!UBERON:0002028;1.27e-22;12!UBERON:0004732;6.44e-21;13!UBERON:0002680;1.72e-17;9!UBERON:0001895;1.72e-17;9!UBERON:0002702;1.51e-09;2!UBERON:0000073;5.86e-08;53!UBERON:0002616;5.86e-08;53!UBERON:0001896;8.86e-07;3!UBERON:0001870;8.86e-07;3!UBERON:0001949;8.86e-07;3!UBERON:0005290;8.86e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,7.20e-26,6;UBERON:0006215,7.20e-26,6;UBERON:0004733,1.04e-22,12;UBERON:0002028,1.04e-22,12;UBERON:0007277,1.04e-22,12;UBERON:0004732,5.39e-21,13;UBERON:0003076,2.99e-18,15;UBERON:0003057,2.99e-18,15;UBERON:0002680,1.72e-17,9;UBERON:0001895,1.72e-17,9;UBERON:0010092,1.72e-17,9;UBERON:0000073,5.81e-11,53;UBERON:0002616,5.81e-11,53;UBERON:0001049,2.25e-10,56;UBERON:0005068,2.25e-10,56;UBERON:0006241,2.25e-10,56;UBERON:0007135,2.25e-10,56;UBERON:0002702,1.22e-09,2;UBERON:0010371,1.48e-09,104;UBERON:0003075,1.93e-09,82;UBERON:0007284,1.93e-09,82;UBERON:0002346,5.49e-09,86;UBERON:0000955,2.10e-08,68;UBERON:0006238,2.10e-08,68;UBERON:0010314,1.93e-07,132;UBERON:0001017,4.80e-07,81;UBERON:0004121,5.50e-07,171;UBERON:0000924,5.50e-07,171;UBERON:0006601,5.50e-07,171;UBERON:0001896,7.28e-07,3;UBERON:0005290,7.28e-07,3;UBERON:0010096,7.28e-07,3;UBERON:0001870,7.70e-07,3 | |||
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|short_description=p@chr11:64110458..64110478,+ | |||
}} |
Revision as of 18:45, 10 September 2013
Short description: | p@chr11:64110458..64110478, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr11:64110458..64110478, + |
Coexpression cluster: | C11_cerebellum_medulla_pons_parietal_occipital_middle_medial |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
buccal mucosa cell | 1.03e-17 | 1 |
endothelial cell of viscerocranial mucosa | 1.03e-17 | 1 |
keratinized cell of the oral mucosa | 1.03e-17 | 1 |
corneal epithelial cell | 1.71e-09 | 2 |
epithelial cell of Malassez | 6.50e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
cerebellum | 7.20e-26 | 6 |
rhombic lip | 7.20e-26 | 6 |
segmental subdivision of hindbrain | 1.04e-22 | 12 |
hindbrain | 1.04e-22 | 12 |
presumptive hindbrain | 1.04e-22 | 12 |
segmental subdivision of nervous system | 5.39e-21 | 13 |
posterior neural tube | 2.99e-18 | 15 |
chordal neural plate | 2.99e-18 | 15 |
regional part of metencephalon | 1.72e-17 | 9 |
metencephalon | 1.72e-17 | 9 |
future metencephalon | 1.72e-17 | 9 |
regional part of nervous system | 5.81e-11 | 53 |
regional part of brain | 5.81e-11 | 53 |
neural tube | 2.25e-10 | 56 |
neural rod | 2.25e-10 | 56 |
future spinal cord | 2.25e-10 | 56 |
neural keel | 2.25e-10 | 56 |
middle frontal gyrus | 1.22e-09 | 2 |
ecto-epithelium | 1.48e-09 | 104 |
neural plate | 1.93e-09 | 82 |
presumptive neural plate | 1.93e-09 | 82 |
neurectoderm | 5.49e-09 | 86 |
brain | 2.10e-08 | 68 |
future brain | 2.10e-08 | 68 |
structure with developmental contribution from neural crest | 1.93e-07 | 132 |
central nervous system | 4.80e-07 | 81 |
ectoderm-derived structure | 5.50e-07 | 171 |
ectoderm | 5.50e-07 | 171 |
presumptive ectoderm | 5.50e-07 | 171 |
medulla oblongata | 7.28e-07 | 3 |
myelencephalon | 7.28e-07 | 3 |
future myelencephalon | 7.28e-07 | 3 |
frontal cortex | 7.70e-07 | 3 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.