FFCP PHASE1:Hg19::chr17:38210644..38210675,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=9862|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=22963|TSSclassifier=W|UniProt=O75448,E9PFL1,F8W9R9,F5GY88,F5H5K2,F5H3E6,F5H0K1,F5H0M2,F5H2D6|association_with_transcript=0bp_to_ENST00000356271,ENST00000394127,ENST00000394128,ENST00000428757,ENST00000431269,ENST00000501516,ENST00000535071,ENST00000535508,ENST00000536318,ENST00000537674,ENST00000543759_5end|description=CAGE_peak_1_at_MED24_5end|id=chr17:38210644..38210675,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005743!1.91e-13!86;UBERON:0000073!7.44e-13!94;UBERON:0001016!7.44e-13!94;UBERON:0000924!1.35e-12!173;UBERON:0006601!1.35e-12!173;UBERON:0002346!1.50e-12!90;UBERON:0003056!2.37e-12!61;UBERON:0004121!6.99e-12!169;UBERON:0001017!8.08e-12!82;UBERON:0003075!8.72e-12!86;UBERON:0007284!8.72e-12!86;UBERON:0000955!8.36e-11!69;UBERON:0006238!8.36e-11!69;UBERON:0000153!2.71e-10!129;UBERON:0007811!2.71e-10!129;UBERON:0001049!2.72e-10!57;UBERON:0005068!2.72e-10!57;UBERON:0006241!2.72e-10!57;UBERON:0007135!2.72e-10!57;UBERON:0000483!5.05e-10!309;UBERON:0000119!5.30e-10!312;UBERON:0000064!1.01e-09!219;UBERON:0000033!1.32e-09!123;UBERON:0002616!3.89e-09!59;UBERON:0002780!4.91e-09!41;UBERON:0001890!4.91e-09!41;UBERON:0006240!4.91e-09!41;UBERON:0003080!5.99e-09!42;UBERON:0001893!8.14e-09!34;UBERON:0002791!1.54e-08!33;UBERON:0001869!2.07e-08!32;UBERON:0000956!6.91e-08!25;UBERON:0000203!6.91e-08!25;UBERON:0002020!7.05e-08!34;UBERON:0003528!7.05e-08!34;UBERON:0001950!2.38e-07!20;UBERON:0002619!4.00e-07!22|ontology_enrichment_uberon_v019=UBERON:0000956;7.31e-08;25!UBERON:0000203;7.31e-08;25!UBERON:0001893;7.72e-08;34!UBERON:0001869;1.28e-07;32!UBERON:0002791;1.81e-07;32!UBERON:0001950;2.56e-07;20!UBERON:0003528;3.79e-07;34!UBERON:0002020;3.79e-07;34!UBERON:0002619;4.39e-07;22!UBERON:0000073;5.20e-07;53!UBERON:0002616;5.20e-07;53!UBERON:0002780;9.34e-07;41!UBERON:0001890;9.34e-07;41|ontology_enrichment_uberon_v019_2=UBERON:0010371,3.20e-13,104;UBERON:0002346,6.14e-13,86;UBERON:0004121,8.55e-13,171;UBERON:0000924,8.55e-13,171;UBERON:0006601,8.55e-13,171;UBERON:0003075,3.63e-12,82;UBERON:0007284,3.63e-12,82;UBERON:0003056,4.91e-12,61;UBERON:0001017,7.32e-12,81;UBERON:0001016,2.49e-11,89;UBERON:0000955,7.44e-11,68;UBERON:0006238,7.44e-11,68;UBERON:0000073,9.70e-11,53;UBERON:0002616,9.70e-11,53;UBERON:0001049,2.33e-10,56;UBERON:0005068,2.33e-10,56;UBERON:0006241,2.33e-10,56;UBERON:0007135,2.33e-10,56;UBERON:0000483,5.79e-10,306;UBERON:0000119,6.08e-10,309;UBERON:0002780,4.91e-09,41;UBERON:0001890,4.91e-09,41;UBERON:0003080,4.91e-09,41;UBERON:0006240,4.91e-09,41;UBERON:0001893,8.14e-09,34;UBERON:0001869,2.07e-08,32;UBERON:0002791,3.55e-08,32;UBERON:0000956,6.91e-08,25;UBERON:0000203,6.91e-08,25;UBERON:0003528,7.05e-08,34;UBERON:0002020,7.05e-08,34;UBERON:0001950,2.38e-07,20;UBERON:0011216,2.41e-07,223;UBERON:0002619,4.00e-07,22|phase1_expression=25.9800082356896,25.477962343027,26.4994279700426,13.009528785907,9.83314407740033,14.8297549097063,20.2639902534648,24.0053551902196,25.0738203071845,36.1228886657218,46.0548770861802,49.8046328456793,45.8954542117509,36.6348404761738,9.94192127183747,20.1697543935533,18.0808358407193,23.3699228923959,20.9811103479918,36.4438331907292,33.6601140553017,58.3025781949243,37.7831503012995,44.0735648734687,37.0350786804668,44.5490155510556,43.5133124084713,46.2819394124434,17.7013924582007,26.1003990706105,15.3267962082915,11.0330546937471,30.4217977966033,15.1599144168383,39.8956082988553,37.3905081441919,26.4240395401362,14.9578760303607,19.6533558520739,16.4928261744047,31.5720818678293,30.1221109397651,26.7878590339554,9.8870802370104,6.42389104270976,9.70336244751265,7.20530014407622,6.57868620834921,10.2203102395384,7.48000220037591,8.96562472851852,9.22280696565482,4.82643953031266,7.74581620300591,13.5426486594342,8.84738995850242,9.5517152520246,5.16864014223695,8.26426509401437,9.30694178520671,13.4260796417799,10.8850929061616,7.57961898962201,8.95071976118658,6.67481248845743,9.07816359505824,3.73693349397345,6.78371396193207,8.34372669472322,9.55630916702513,16.345786571101,9.20694089968912,6.32924774881769,19.4354863406986,19.1343869968539,18.6596194502455,18.6465527703182,17.4205195696147,22.5015821375912,19.9508920618874,14.3220007583345,15.8917813775232,17.5996244461323,32.2221780644658,24.016749854316,17.4959391252268,24.4241552091968,29.3123744376786,22.4755256746853,20.0351288452426,29.5990743936913,28.774622279176,31.3464047062688,35.686258716337,13.4522055115569,25.8116403079575,22.0314942527493,25.5456995786957,18.7097364089553,37.4497749675119,26.3997035973208,20.3582556465935,25.3274746930285,32.754674324241,19.1493839858644,23.9256606150311,34.662894561922,31.8947386116931,32.9050149326492,27.6255679734176,36.201852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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=9862 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=22963 | |||
|TSSclassifier=W | |||
|UniProt=O75448,E9PFL1,F8W9R9,F5GY88,F5H5K2,F5H3E6,F5H0K1,F5H0M2,F5H2D6 | |||
|association_with_transcript=0bp_to_ENST00000356271,ENST00000394127,ENST00000394128,ENST00000428757,ENST00000431269,ENST00000501516,ENST00000535071,ENST00000535508,ENST00000536318,ENST00000537674,ENST00000543759_5end | |||
|description=CAGE_peak_1_at_MED24_5end | |||
|id=chr17:38210644..38210675,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005743!1.91e-13!86;UBERON:0000073!7.44e-13!94;UBERON:0001016!7.44e-13!94;UBERON:0000924!1.35e-12!173;UBERON:0006601!1.35e-12!173;UBERON:0002346!1.50e-12!90;UBERON:0003056!2.37e-12!61;UBERON:0004121!6.99e-12!169;UBERON:0001017!8.08e-12!82;UBERON:0003075!8.72e-12!86;UBERON:0007284!8.72e-12!86;UBERON:0000955!8.36e-11!69;UBERON:0006238!8.36e-11!69;UBERON:0000153!2.71e-10!129;UBERON:0007811!2.71e-10!129;UBERON:0001049!2.72e-10!57;UBERON:0005068!2.72e-10!57;UBERON:0006241!2.72e-10!57;UBERON:0007135!2.72e-10!57;UBERON:0000483!5.05e-10!309;UBERON:0000119!5.30e-10!312;UBERON:0000064!1.01e-09!219;UBERON:0000033!1.32e-09!123;UBERON:0002616!3.89e-09!59;UBERON:0002780!4.91e-09!41;UBERON:0001890!4.91e-09!41;UBERON:0006240!4.91e-09!41;UBERON:0003080!5.99e-09!42;UBERON:0001893!8.14e-09!34;UBERON:0002791!1.54e-08!33;UBERON:0001869!2.07e-08!32;UBERON:0000956!6.91e-08!25;UBERON:0000203!6.91e-08!25;UBERON:0002020!7.05e-08!34;UBERON:0003528!7.05e-08!34;UBERON:0001950!2.38e-07!20;UBERON:0002619!4.00e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0000956;7.31e-08;25!UBERON:0000203;7.31e-08;25!UBERON:0001893;7.72e-08;34!UBERON:0001869;1.28e-07;32!UBERON:0002791;1.81e-07;32!UBERON:0001950;2.56e-07;20!UBERON:0003528;3.79e-07;34!UBERON:0002020;3.79e-07;34!UBERON:0002619;4.39e-07;22!UBERON:0000073;5.20e-07;53!UBERON:0002616;5.20e-07;53!UBERON:0002780;9.34e-07;41!UBERON:0001890;9.34e-07;41 | |||
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| |||
|short_description=p1@MED24 | |||
}} |
Revision as of 13:22, 11 September 2013
Short description: | p1@MED24 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_MED24_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000356271, ENST00000394127, ENST00000394128, ENST00000428757, ENST00000431269, ENST00000501516, ENST00000535071, ENST00000535508, ENST00000536318, ENST00000537674, ENST00000543759_5end |
EntrezGene: | MED24 |
HGNC: | 22963 |
UniProt: | O75448E9PFL1F8W9R9F5GY88F5H5K2F5H3E6F5H0K1F5H0M2F5H2D6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ecto-epithelium | 3.20e-13 | 104 |
neurectoderm | 6.14e-13 | 86 |
ectoderm-derived structure | 8.55e-13 | 171 |
ectoderm | 8.55e-13 | 171 |
presumptive ectoderm | 8.55e-13 | 171 |
neural plate | 3.63e-12 | 82 |
presumptive neural plate | 3.63e-12 | 82 |
pre-chordal neural plate | 4.91e-12 | 61 |
central nervous system | 7.32e-12 | 81 |
nervous system | 2.49e-11 | 89 |
brain | 7.44e-11 | 68 |
future brain | 7.44e-11 | 68 |
regional part of nervous system | 9.70e-11 | 53 |
regional part of brain | 9.70e-11 | 53 |
neural tube | 2.33e-10 | 56 |
neural rod | 2.33e-10 | 56 |
future spinal cord | 2.33e-10 | 56 |
neural keel | 2.33e-10 | 56 |
epithelium | 5.79e-10 | 306 |
cell layer | 6.08e-10 | 309 |
regional part of forebrain | 4.91e-09 | 41 |
forebrain | 4.91e-09 | 41 |
anterior neural tube | 4.91e-09 | 41 |
future forebrain | 4.91e-09 | 41 |
telencephalon | 8.14e-09 | 34 |
cerebral hemisphere | 2.07e-08 | 32 |
regional part of telencephalon | 3.55e-08 | 32 |
cerebral cortex | 6.91e-08 | 25 |
pallium | 6.91e-08 | 25 |
brain grey matter | 7.05e-08 | 34 |
gray matter | 7.05e-08 | 34 |
neocortex | 2.38e-07 | 20 |
organ system subdivision | 2.41e-07 | 223 |
regional part of cerebral cortex | 4.00e-07 | 22 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.