FFCP PHASE1:Hg19::chr18:67872891..67872940,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=25914|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=18654|TSSclassifier=S|UniProt=Q86VV8,C9JTR3|association_with_transcript=21bp_to_ENST00000255674,ENST00000437017,ENST00000454359,NM_173630,uc002lkp.2,uc002lkq.1,uc010xfb.1_5end|description=CAGE_peak_1_at_RTTN_5end|id=chr18:67872891..67872940,-|ontology_enrichment_celltype=CL:0000542!1.03e-20!53;CL:0000051!1.03e-20!53;CL:0000838!4.41e-20!52;CL:0000037!1.07e-12!172;CL:0000566!1.07e-12!172;CL:0000988!4.68e-11!182;CL:0000084!6.45e-11!25;CL:0000827!6.45e-11!25;CL:0002032!1.24e-10!165;CL:0000837!1.24e-10!165;CL:0000791!2.04e-09!18;CL:0000789!2.04e-09!18;CL:0002420!2.04e-09!18;CL:0002419!2.04e-09!18;CL:0000790!2.04e-09!18;CL:0000945!1.07e-08!24;CL:0000826!1.07e-08!24;CL:0000738!1.23e-07!140;CL:0002031!1.83e-07!124|ontology_enrichment_celltype_v019=CL:0000542;3.21e-12;53!CL:0000084;4.79e-11;25!CL:0000791;1.82e-09;18!CL:0000789;1.82e-09;18!CL:0002419;1.82e-09;18!CL:0000945;1.02e-08;24|ontology_enrichment_celltype_v019_2=CL:0000542,1.03e-20,53;CL:0000051,1.03e-20,53;CL:0000838,4.41e-20,52;CL:0000037,2.03e-12,168;CL:0000988,4.32e-11,177;CL:0000084,6.44e-11,25;CL:0000827,6.44e-11,25;CL:0002032,2.29e-10,161;CL:0000837,2.29e-10,161;CL:0000791,2.04e-09,18;CL:0000789,2.04e-09,18;CL:0002420,2.04e-09,18;CL:0002419,2.04e-09,18;CL:0000790,2.04e-09,18;CL:0000945,1.07e-08,24;CL:0000826,1.07e-08,24;CL:0000738,2.16e-07,136;CL:0002031,3.23e-07,120|ontology_enrichment_development_v019=CL:0000051;3.21e-12;53!CL:0000790;1.82e-09;18|ontology_enrichment_disease=DOID:2531!8.48e-11!51;DOID:0060083!8.48e-11!51;DOID:1240!5.04e-09!39|ontology_enrichment_disease_v019=DOID:1240;1.74e-07;39!DOID:2531;4.14e-07;51!DOID:0060083;4.14e-07;51|ontology_enrichment_disease_v019_2=DOID:2531,8.48e-11,51;DOID:0060083,8.48e-11,51;DOID:1240,5.04e-09,39|ontology_enrichment_uberon=UBERON:0000073!2.28e-10!94;UBERON:0001016!2.28e-10!94;UBERON:0001049!4.44e-10!57;UBERON:0005068!4.44e-10!57;UBERON:0006241!4.44e-10!57;UBERON:0007135!4.44e-10!57;UBERON:0001017!4.52e-10!82;UBERON:0005743!1.62e-09!86;UBERON:0000955!2.32e-09!69;UBERON:0006238!2.32e-09!69;UBERON:0007023!2.84e-09!115;UBERON:0002780!7.29e-08!41;UBERON:0001890!7.29e-08!41;UBERON:0006240!7.29e-08!41;UBERON:0002616!1.28e-07!59;UBERON:0003080!1.42e-07!42|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0001016,3.87e-11,89;UBERON:0001049,2.25e-10,56;UBERON:0005068,2.25e-10,56;UBERON:0006241,2.25e-10,56;UBERON:0007135,2.25e-10,56;UBERON:0001017,2.70e-10,81;UBERON:0000955,1.34e-09,68;UBERON:0006238,1.34e-09,68;UBERON:0000073,2.30e-09,53;UBERON:0002616,2.30e-09,53;UBERON:0007023,4.04e-09,114;UBERON:0002780,7.28e-08,41;UBERON:0001890,7.28e-08,41;UBERON:0003080,7.28e-08,41;UBERON:0006240,7.28e-08,41|phase1_expression=2.90685406832891,2.14100523890983,2.53717927372748,0,1.34088328328186,0,0,1.89515962028049,1.56711376919903,5.16041266653169,2.09340350391728,10.0483031179879,3.69273769519835,1.36142988256051,2.31978163009541,1.34465029290355,1.20538905604795,2.19093027116212,0.487932798790507,10.0959267622966,5.30401797235058,3.44800193625897,18.3191031763876,22.1736568618072,18.0781401016516,16.4288822358095,19.8683426468869,19.3628522031651,8.26064981382698,24.5650814782216,11.3015770020735,9.19421224478927,5.72291245678675,2.9580320813343,17.97239053463,23.600092592912,17.6160263600908,13.8498852132969,16.0435557976113,13.6716848550987,8.50878802111712,13.6035339727971,6.43938919085466,3.19876125315042,4.1566353805769,5.33684934613196,3.95129362739664,3.70051099219643,5.57471467611186,5.17846306179871,7.68482119587302,4.02019790810595,7.23965929546899,7.10033151942209,10.8341189275473,3.76484679085209,4.09359225086769,3.82029923556644,5.50951006267625,5.1348644332175,4.47535988059329,5.60747210317417,6.78176435913548,5.11469700639233,3.48251086354301,4.53908179752912,4.9825779919646,6.02996796616184,10.429658368404,7.8187984093842,8.47559303686716,5.52416453981347,3.79754864929061,9.29523259772544,8.07896339867165,6.70907665626803,4.26848798356681,6.15725260650176,9.00063285503649,7.69534408101371,8.55341711956087,7.67189445811463,8.79981222306614,17.4764355603882,17.7901850772711,23.4701622411579,17.2170274425485,20.6910878383614,19.8313461835459,16.2189138271012,35.2912040847858,31.7108082260307,29.4350385656426,9.25199300053181,24.6623767711876,16.3298132560548,35.9978879308315,26.331721104194,24.6721798799411,18.8920739791466,24.1182477308857,22.2520468695325,23.3792074089494,12.5893816280246,21.5062312456631,17.7227115666897,24.3723477388514,10.8877621766824,14.1764688840267,12.4972807498794,13.2648008537207,20.8658221729238,25.3570023007123,28.3593277775096,21.9524599990451,16.7697827192398,16.4784812248826,16.4941173831662,24.5429101258918,21.6624481740386,16.2770863464105,14.2567806667256,25.1460448859881,28.7969875097441,12.4930726552346,20.5996209278295,20.5281999230262,38.3052812126992,33.9649048645054,33.0199640852782,2.43806866313962,3.35350429851818,3.580151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17.1440460828146,7.20983142705737,6.90897169629488,8.17826971279221,4.58653788384978,14.009055798962,5.28280308396568,16.998928647669,24.1123309108758,10.6773287389706,10.7828031177699,22.8291378312283,9.23204750948334,11.1973906805935,25.9625573746413,11.537254819445,9.27869056949789,29.2681830354597,11.7115445668277,18.4940180488464,10.2866684334972,20.66986196501,6.99609571437521,63.0893960010027,12.008561224282,2.82140754952547,3.3687002508852,19.3329967540343,5.6678630530234,17.5597244962866,8.40977093387096,19.9136640015157,13.9006077453078,11.949197776757,18.5600246336901,3.23887471053385,8.72975952773279,1.83428598521679,7.39364263362165,4.95796724107317,24.8529573381636,3.77940822020922,12.1840731925797,3.22728109925632,14.8487662134288,10.7381744737383,7.69728012297455,16.412025570092,12.0892276466926,7.02970288752463,14.4680757550829,13.63439919169,21.8789923607288,4.93431990171464,14.8863353516788,11.607502127735,5.366021960863,16.0710550763486,20.8495907775671,9.10448406354947,14.1150558637805,8.16061805496277,20.5116497849287,13.0330887172438,25.2847406673814,11.9048720148757,6.97343661215412,21.1339663594931,10.4395813491184,10.0553977546241,7.84762057278609,16.4368569691709,5.83004496290278,12.8992955729504,29.3053831124291,74.5824247378469,20.9234565662625,13.9086617842064,8.01711364730253,6.2164849248911,9.38951624016725,13.1339335744677,9.46500189404611,6.86325604237279,7.15792599976925,11.854837405346,6.64409918777745,3.41227024230752,8.5998504507969,3.13195209033819,10.6983754640615,3.53561982448581,12.30114790657,7.28905928679354,13.9177731760584,14.5713297917742,19.1830360038927,21.2877329422664,14.3893309840858,16.2642358136102,23.1974490332855,17.5116898537341,6.71415175539119,10.7094184646939,9.87666322359198,13.9734543399726,2.59244201811789,16.0972943034255,23.7637120261669,20.7101306515866,8.83620996376648,11.560021911522,19.1439927281524,18.5890550020368,3.21397089490184,7.41079230602953,23.1897549731696,12.4157186001908,12.3856906519226,26.8045020493214,30.4499115032846,15.162102312574,12.2178193295306,12.6966441723696,1.48798007266701,0.462175628631418,0,22.7099564703142,15.6249767908085,15.4572171233953,11.014793612134,12.0247832369502,8.91380525487996,17.2988202111739,12.2761491113548,15.5419195490584,27.3625915021397,25.5479499778881,13.0072728959598,15.7122524766069,30.9380878114469,34.1410928627218,10.8767906703195,6.11012719470383,11.7227969595767,11.103554142745,6.16019941953506,24.987611668412,7.74599818240905,10.6451314094724,16.6876700652498,8.9650970537281,9.653614114347,2.15580485055809,9.38563769613817,27.0153591644135,13.8344700627351,12.6493787095247,16.7057248680552,9.61705476909699|short_description=p1@RTTN}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=25914 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18654 | |||
|TSSclassifier=S | |||
|UniProt=Q86VV8,C9JTR3 | |||
|association_with_transcript=21bp_to_ENST00000255674,ENST00000437017,ENST00000454359,NM_173630,uc002lkp.2,uc002lkq.1,uc010xfb.1_5end | |||
|description=CAGE_peak_1_at_RTTN_5end | |||
|id=chr18:67872891..67872940,- | |||
|ontology_enrichment_celltype=CL:0000542!1.03e-20!53;CL:0000051!1.03e-20!53;CL:0000838!4.41e-20!52;CL:0000037!1.07e-12!172;CL:0000566!1.07e-12!172;CL:0000988!4.68e-11!182;CL:0000084!6.45e-11!25;CL:0000827!6.45e-11!25;CL:0002032!1.24e-10!165;CL:0000837!1.24e-10!165;CL:0000791!2.04e-09!18;CL:0000789!2.04e-09!18;CL:0002420!2.04e-09!18;CL:0002419!2.04e-09!18;CL:0000790!2.04e-09!18;CL:0000945!1.07e-08!24;CL:0000826!1.07e-08!24;CL:0000738!1.23e-07!140;CL:0002031!1.83e-07!124 | |||
|ontology_enrichment_celltype_v019=CL:0000542;3.21e-12;53!CL:0000084;4.79e-11;25!CL:0000791;1.82e-09;18!CL:0000789;1.82e-09;18!CL:0002419;1.82e-09;18!CL:0000945;1.02e-08;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,1.03e-20,53;CL:0000051,1.03e-20,53;CL:0000838,4.41e-20,52;CL:0000037,2.03e-12,168;CL:0000988,4.32e-11,177;CL:0000084,6.44e-11,25;CL:0000827,6.44e-11,25;CL:0002032,2.29e-10,161;CL:0000837,2.29e-10,161;CL:0000791,2.04e-09,18;CL:0000789,2.04e-09,18;CL:0002420,2.04e-09,18;CL:0002419,2.04e-09,18;CL:0000790,2.04e-09,18;CL:0000945,1.07e-08,24;CL:0000826,1.07e-08,24;CL:0000738,2.16e-07,136;CL:0002031,3.23e-07,120 | |||
|ontology_enrichment_development_v019=CL:0000051;3.21e-12;53!CL:0000790;1.82e-09;18 | |||
|ontology_enrichment_disease=DOID:2531!8.48e-11!51;DOID:0060083!8.48e-11!51;DOID:1240!5.04e-09!39 | |||
|ontology_enrichment_disease_v019=DOID:1240;1.74e-07;39!DOID:2531;4.14e-07;51!DOID:0060083;4.14e-07;51 | |||
|ontology_enrichment_disease_v019_2=DOID:2531,8.48e-11,51;DOID:0060083,8.48e-11,51;DOID:1240,5.04e-09,39 | |||
|ontology_enrichment_uberon=UBERON:0000073!2.28e-10!94;UBERON:0001016!2.28e-10!94;UBERON:0001049!4.44e-10!57;UBERON:0005068!4.44e-10!57;UBERON:0006241!4.44e-10!57;UBERON:0007135!4.44e-10!57;UBERON:0001017!4.52e-10!82;UBERON:0005743!1.62e-09!86;UBERON:0000955!2.32e-09!69;UBERON:0006238!2.32e-09!69;UBERON:0007023!2.84e-09!115;UBERON:0002780!7.29e-08!41;UBERON:0001890!7.29e-08!41;UBERON:0006240!7.29e-08!41;UBERON:0002616!1.28e-07!59;UBERON:0003080!1.42e-07!42 | |||
|ontology_enrichment_uberon_v019= | |||
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| |||
|short_description=p1@RTTN | |||
}} |
Revision as of 18:06, 11 September 2013
Short description: | p1@RTTN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_RTTN_5end |
Coexpression cluster: | NA |
Association with transcript: | 21bp_to_ENST00000255674, ENST00000437017, ENST00000454359, NM_173630, uc002lkp.2, uc002lkq.1, uc010xfb.1_5end |
EntrezGene: | RTTN |
HGNC: | 18654 |
UniProt: | Q86VV8C9JTR3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 1.03e-20 | 53 |
common lymphoid progenitor | 1.03e-20 | 53 |
lymphoid lineage restricted progenitor cell | 4.41e-20 | 52 |
hematopoietic stem cell | 2.03e-12 | 168 |
hematopoietic cell | 4.32e-11 | 177 |
T cell | 6.44e-11 | 25 |
pro-T cell | 6.44e-11 | 25 |
hematopoietic oligopotent progenitor cell | 2.29e-10 | 161 |
hematopoietic multipotent progenitor cell | 2.29e-10 | 161 |
mature alpha-beta T cell | 2.04e-09 | 18 |
alpha-beta T cell | 2.04e-09 | 18 |
immature T cell | 2.04e-09 | 18 |
mature T cell | 2.04e-09 | 18 |
immature alpha-beta T cell | 2.04e-09 | 18 |
lymphocyte of B lineage | 1.07e-08 | 24 |
pro-B cell | 1.07e-08 | 24 |
leukocyte | 2.16e-07 | 136 |
hematopoietic lineage restricted progenitor cell | 3.23e-07 | 120 |
Ontology term | p-value | n |
---|---|---|
nervous system | 3.87e-11 | 89 |
neural tube | 2.25e-10 | 56 |
neural rod | 2.25e-10 | 56 |
future spinal cord | 2.25e-10 | 56 |
neural keel | 2.25e-10 | 56 |
central nervous system | 2.70e-10 | 81 |
brain | 1.34e-09 | 68 |
future brain | 1.34e-09 | 68 |
regional part of nervous system | 2.30e-09 | 53 |
regional part of brain | 2.30e-09 | 53 |
adult organism | 4.04e-09 | 114 |
regional part of forebrain | 7.28e-08 | 41 |
forebrain | 7.28e-08 | 41 |
anterior neural tube | 7.28e-08 | 41 |
future forebrain | 7.28e-08 | 41 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 8.48e-11 | 51 |
immune system cancer | 8.48e-11 | 51 |
leukemia | 5.04e-09 | 39 |
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