FFCP PHASE1:Hg19::chr19:17571722..17571754,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=115861|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=25179|TSSclassifier=S|UniProt=Q96CM4|association_with_transcript=0bp_to_ENST00000301944,NM_138454,uc002ngs.2_5end|coexpression_cluster_id=C40|description=CAGE_peak_1_at_NXNL1_5end|id=chr19:17571722..17571754,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=UBERON:0003056;6.51e-34;3!UBERON:0006601;5.41e-07;82|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:5409;1.49e-07;4|ontology_enrichment_disease_v019_2=DOID:5409,1.49e-07,4|ontology_enrichment_uberon=UBERON:0001905!8.57e-32!2;UBERON:0002757!8.57e-32!2;UBERON:0010134!8.57e-32!2;UBERON:0002784!8.57e-32!2;UBERON:0005408!8.57e-32!2;UBERON:0001899!8.57e-32!2;UBERON:0001896!2.96e-21!3;UBERON:0005290!2.96e-21!3;UBERON:0010096!2.96e-21!3;UBERON:0003075!1.32e-16!86;UBERON:0007284!1.32e-16!86;UBERON:0003296!1.93e-16!4;UBERON:0010133!1.93e-16!4;UBERON:0005743!2.13e-16!86;UBERON:0002336!3.07e-16!1;UBERON:0001018!3.07e-16!1;UBERON:0002473!3.07e-16!1;UBERON:0005340!3.07e-16!1;UBERON:0002316!3.07e-16!1;UBERON:0003544!3.07e-16!1;UBERON:0001020!3.07e-16!1;UBERON:0005970!3.07e-16!1;UBERON:0002437!3.07e-16!1;UBERON:0002346!7.77e-16!90;UBERON:0000073!8.56e-15!94;UBERON:0001016!8.56e-15!94;UBERON:0001017!7.22e-14!82;UBERON:0000966!2.23e-13!5;UBERON:0005388!2.23e-13!5;UBERON:0001802!2.23e-13!5;UBERON:0000955!4.52e-13!69;UBERON:0006238!4.52e-13!69;UBERON:0000970!1.13e-12!20;UBERON:0002104!4.39e-12!21;UBERON:0003056!1.27e-11!61;UBERON:0000033!2.93e-11!123;UBERON:0000020!4.66e-11!23;UBERON:0000153!1.06e-10!129;UBERON:0007811!1.06e-10!129;UBERON:0001032!1.31e-10!24;UBERON:0004456!1.31e-10!24;UBERON:0001894!8.35e-10!7;UBERON:0006222!8.35e-10!7;UBERON:0004121!1.11e-09!169;UBERON:0000924!1.95e-09!173;UBERON:0006601!1.95e-09!173;UBERON:0001049!3.24e-09!57;UBERON:0005068!3.24e-09!57;UBERON:0006241!3.24e-09!57;UBERON:0007135!3.24e-09!57;UBERON:0002360!5.94e-09!2;UBERON:0000094!5.94e-09!2;UBERON:0007645!5.94e-09!2;UBERON:0002616!6.72e-09!59;UBERON:0001954!8.09e-09!2;UBERON:0003022!8.09e-09!2;UBERON:0002421!8.09e-09!2;UBERON:0002600!8.09e-09!2;UBERON:0005162!8.74e-09!2;UBERON:0000122!8.74e-09!2;UBERON:0002298!1.42e-08!8;UBERON:0000019!6.94e-08!19;UBERON:0000047!6.94e-08!19;UBERON:0004088!6.94e-08!19;UBERON:0003072!6.94e-08!19;UBERON:0003071!6.94e-08!19;UBERON:0004128!6.94e-08!19;UBERON:0007023!7.66e-08!115;UBERON:0001456!3.49e-07!21|ontology_enrichment_uberon_v019=UBERON:0001905;4.00e-50;2!UBERON:0002757;4.00e-50;2!UBERON:0010134;4.00e-50;2!UBERON:0005408;4.00e-50;2!UBERON:0001899;4.00e-50;2!UBERON:0003296;1.11e-25;4!UBERON:0010133;1.11e-25;4!UBERON:0002784;1.11e-25;4!UBERON:0000966;8.13e-21;5!UBERON:0005388;8.13e-21;5!UBERON:0001802;8.13e-21;5!UBERON:0001894;3.79e-15;7!UBERON:0002360;1.46e-13;2!UBERON:0000094;1.46e-13;2!UBERON:0010743;1.46e-13;2!UBERON:0000970;6.38e-12;20!UBERON:0002104;2.18e-11;21!UBERON:0000020;1.86e-10;23!UBERON:0001032;4.77e-10;24!UBERON:0004456;4.77e-10;24!UBERON:0001896;1.74e-09;3!UBERON:0005290;1.74e-09;3|ontology_enrichment_uberon_v019_2=UBERON:0001905,4.00e-50,2;UBERON:0002757,4.00e-50,2;UBERON:0010134,4.00e-50,2;UBERON:0005408,4.00e-50,2;UBERON:0001899,4.00e-50,2;UBERON:0003296,1.11e-25,4;UBERON:0010133,1.11e-25,4;UBERON:0002784,1.11e-25,4;UBERON:0000966,1.57e-17,6;UBERON:0005388,1.57e-17,6;UBERON:0001802,1.57e-17,6;UBERON:0001894,3.79e-15,7;UBERON:0006222,3.79e-15,7;UBERON:0002360,1.55e-13,2;UBERON:0000094,1.55e-13,2;UBERON:0010743,1.55e-13,2;UBERON:0000970,2.18e-11,21;UBERON:0002104,2.18e-11,21;UBERON:0000020,4.77e-10,24;UBERON:0001032,4.77e-10,24;UBERON:0004456,4.77e-10,24;UBERON:0001896,1.67e-09,3;UBERON:0005290,1.67e-09,3;UBERON:0010096,1.67e-09,3;UBERON:0003075,1.09e-07,82;UBERON:0007284,1.09e-07,82;UBERON:0001017,1.19e-07,81;UBERON:0002346,2.42e-07,86;UBERON:0001016,6.46e-07,89;UBERON:0003056,8.00e-07,61|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231860809950154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=115861 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25179 | |||
|TSSclassifier=S | |||
|UniProt=Q96CM4 | |||
|association_with_transcript=0bp_to_ENST00000301944,NM_138454,uc002ngs.2_5end | |||
|coexpression_cluster_id=C40 | |||
|description=CAGE_peak_1_at_NXNL1_5end | |||
|id=chr19:17571722..17571754,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003056;6.51e-34;3!UBERON:0006601;5.41e-07;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:5409;1.49e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:5409,1.49e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0001905!8.57e-32!2;UBERON:0002757!8.57e-32!2;UBERON:0010134!8.57e-32!2;UBERON:0002784!8.57e-32!2;UBERON:0005408!8.57e-32!2;UBERON:0001899!8.57e-32!2;UBERON:0001896!2.96e-21!3;UBERON:0005290!2.96e-21!3;UBERON:0010096!2.96e-21!3;UBERON:0003075!1.32e-16!86;UBERON:0007284!1.32e-16!86;UBERON:0003296!1.93e-16!4;UBERON:0010133!1.93e-16!4;UBERON:0005743!2.13e-16!86;UBERON:0002336!3.07e-16!1;UBERON:0001018!3.07e-16!1;UBERON:0002473!3.07e-16!1;UBERON:0005340!3.07e-16!1;UBERON:0002316!3.07e-16!1;UBERON:0003544!3.07e-16!1;UBERON:0001020!3.07e-16!1;UBERON:0005970!3.07e-16!1;UBERON:0002437!3.07e-16!1;UBERON:0002346!7.77e-16!90;UBERON:0000073!8.56e-15!94;UBERON:0001016!8.56e-15!94;UBERON:0001017!7.22e-14!82;UBERON:0000966!2.23e-13!5;UBERON:0005388!2.23e-13!5;UBERON:0001802!2.23e-13!5;UBERON:0000955!4.52e-13!69;UBERON:0006238!4.52e-13!69;UBERON:0000970!1.13e-12!20;UBERON:0002104!4.39e-12!21;UBERON:0003056!1.27e-11!61;UBERON:0000033!2.93e-11!123;UBERON:0000020!4.66e-11!23;UBERON:0000153!1.06e-10!129;UBERON:0007811!1.06e-10!129;UBERON:0001032!1.31e-10!24;UBERON:0004456!1.31e-10!24;UBERON:0001894!8.35e-10!7;UBERON:0006222!8.35e-10!7;UBERON:0004121!1.11e-09!169;UBERON:0000924!1.95e-09!173;UBERON:0006601!1.95e-09!173;UBERON:0001049!3.24e-09!57;UBERON:0005068!3.24e-09!57;UBERON:0006241!3.24e-09!57;UBERON:0007135!3.24e-09!57;UBERON:0002360!5.94e-09!2;UBERON:0000094!5.94e-09!2;UBERON:0007645!5.94e-09!2;UBERON:0002616!6.72e-09!59;UBERON:0001954!8.09e-09!2;UBERON:0003022!8.09e-09!2;UBERON:0002421!8.09e-09!2;UBERON:0002600!8.09e-09!2;UBERON:0005162!8.74e-09!2;UBERON:0000122!8.74e-09!2;UBERON:0002298!1.42e-08!8;UBERON:0000019!6.94e-08!19;UBERON:0000047!6.94e-08!19;UBERON:0004088!6.94e-08!19;UBERON:0003072!6.94e-08!19;UBERON:0003071!6.94e-08!19;UBERON:0004128!6.94e-08!19;UBERON:0007023!7.66e-08!115;UBERON:0001456!3.49e-07!21 | |||
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|short_description=p1@NXNL1 | |||
}} |
Revision as of 19:19, 11 September 2013
Short description: | p1@NXNL1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_NXNL1_5end |
Coexpression cluster: | C40_eye_retina_Lens_pineal_tongue_retinoblastoma_small |
Association with transcript: | 0bp_to_ENST00000301944, NM_138454, uc002ngs.2_5end |
EntrezGene: | NXNL1 |
HGNC: | 25179 |
UniProt: | Q96CM4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pineal body | 4.00e-50 | 2 |
regional part of epithalamus | 4.00e-50 | 2 |
secretory circumventricular organ | 4.00e-50 | 2 |
circumventricular organ | 4.00e-50 | 2 |
epithalamus | 4.00e-50 | 2 |
gland of diencephalon | 1.11e-25 | 4 |
neuroendocrine gland | 1.11e-25 | 4 |
regional part of diencephalon | 1.11e-25 | 4 |
retina | 1.57e-17 | 6 |
photoreceptor array | 1.57e-17 | 6 |
posterior segment of eyeball | 1.57e-17 | 6 |
diencephalon | 3.79e-15 | 7 |
future diencephalon | 3.79e-15 | 7 |
meninx | 1.55e-13 | 2 |
membrane organ | 1.55e-13 | 2 |
meningeal cluster | 1.55e-13 | 2 |
eye | 2.18e-11 | 21 |
visual system | 2.18e-11 | 21 |
sense organ | 4.77e-10 | 24 |
sensory system | 4.77e-10 | 24 |
entire sense organ system | 4.77e-10 | 24 |
medulla oblongata | 1.67e-09 | 3 |
myelencephalon | 1.67e-09 | 3 |
future myelencephalon | 1.67e-09 | 3 |
neural plate | 1.09e-07 | 82 |
presumptive neural plate | 1.09e-07 | 82 |
central nervous system | 1.19e-07 | 81 |
neurectoderm | 2.42e-07 | 86 |
nervous system | 6.46e-07 | 89 |
pre-chordal neural plate | 8.00e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
lung small cell carcinoma | 1.49e-07 | 4 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.