FFCP PHASE1:Hg19::chr2:27485902..27485923,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=7781|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=11014|TSSclassifier=S|UniProt=Q99726|association_with_transcript=36bp_to_NM_003459,uc002rjk.2_5end|description=CAGE_peak_1_at_SLC30A3_5end|id=chr2:27485902..27485923,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0002138;1.17e-08;6!CL:0002139;4.01e-08;24!CL:0000115;2.37e-07;36|ontology_enrichment_celltype_v019_2=CL:0000115,3.20e-09,36;CL:0005020,1.26e-08,6;CL:0002138,1.26e-08,6;CL:0005022,1.26e-08,6;CL:0002139,4.74e-08,24;CL:0000213,4.73e-07,58;CL:0000215,4.73e-07,58|ontology_enrichment_development_v019=CL:0005022;1.17e-08;6|ontology_enrichment_disease=DOID:0050687!3.65e-10!143;DOID:305!2.08e-08!106;DOID:162!8.20e-07!235|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002619!3.49e-13!22;UBERON:0001950!7.30e-12!20;UBERON:0000956!1.47e-10!25;UBERON:0000203!1.47e-10!25;UBERON:0005743!2.93e-10!86;UBERON:0000073!3.04e-10!94;UBERON:0001016!3.04e-10!94;UBERON:0001017!3.05e-10!82;UBERON:0001869!1.14e-08!32;UBERON:0007023!1.14e-08!115;UBERON:0001893!1.85e-08!34;UBERON:0002020!2.16e-08!34;UBERON:0003528!2.16e-08!34;UBERON:0002346!5.59e-08!90;UBERON:0002791!7.53e-08!33;UBERON:0000955!5.87e-07!69;UBERON:0006238!5.87e-07!69;UBERON:0001049!6.32e-07!57;UBERON:0005068!6.32e-07!57;UBERON:0006241!6.32e-07!57;UBERON:0007135!6.32e-07!57|ontology_enrichment_uberon_v019=UBERON:0002619;3.01e-23;22!UBERON:0001950;5.62e-21;20!UBERON:0000956;9.68e-20;25!UBERON:0000203;9.68e-20;25!UBERON:0001869;4.15e-16;32!UBERON:0001893;7.58e-15;34!UBERON:0002791;3.14e-14;32!UBERON:0003528;5.35e-14;34!UBERON:0002020;5.35e-14;34!UBERON:0000200;9.47e-10;6!UBERON:0002780;3.28e-09;41!UBERON:0001890;3.28e-09;41!UBERON:0000349;6.56e-08;5!UBERON:0001871;6.57e-08;6|ontology_enrichment_uberon_v019_2=UBERON:0002619,3.00e-23,22;UBERON:0001950,6.22e-21,20;UBERON:0000956,9.63e-20,25;UBERON:0000203,9.63e-20,25;UBERON:0001869,9.38e-18,32;UBERON:0001893,2.63e-16,34;UBERON:0003528,3.95e-16,34;UBERON:0002020,3.95e-16,34;UBERON:0001017,6.05e-16,81;UBERON:0002791,7.52e-16,32;UBERON:0001016,4.12e-15,89;UBERON:0002780,2.28e-12,41;UBERON:0001890,2.28e-12,41;UBERON:0003080,2.28e-12,41;UBERON:0006240,2.28e-12,41;UBERON:0007023,2.27e-11,114;UBERON:0000955,4.13e-11,68;UBERON:0006238,4.13e-11,68;UBERON:0001049,5.37e-11,56;UBERON:0005068,5.37e-11,56;UBERON:0006241,5.37e-11,56;UBERON:0007135,5.37e-11,56;UBERON:0000073,5.52e-10,53;UBERON:0002616,5.52e-10,53;UBERON:0002346,5.91e-10,86;UBERON:0000200,9.26e-10,6;UBERON:0004111,2.23e-09,240;UBERON:0000025,3.60e-09,192;UBERON:0003075,2.03e-08,82;UBERON:0007284,2.03e-08,82;UBERON:0000349,5.76e-08,5;UBERON:0001871,6.97e-08,6;UBERON:0003056,1.11e-07,61;UBERON:0011216,6.09e-07,223|phase1_expression=0,0.642301571672949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204000691244253,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.449446968890169,0,0,0,0,0.199463657621632,0,0,0,0,0.251248665256743,0,0.217188844705117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382273228125229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,0,0.12786256184353,0,3.00802746381534,0,0,0,0,0,0,15.9794472107209,0,0,0.324547393654683,1.21890816109487,2.39324328933957,0.238490624305342,0,0,0,0,0,0,0,0,0,1.8089173141853,1.06729878806013,9.37217715741077,16.516002001475,47.8971426602663,14.8877855104383,1.10298924103761,0,2.14319347881791,3.36794058939255,1.23872628531654,1.53316637465883,0,0.366403487860815,0,0,0,0,0.379891534993739,0,0,0,1.68203280042692,1.06748995729705,0,0.622422070799533,0,0,0,0,0,0,0,0,0.117434498643765,0,0.140450806702248,0,0.122834317311768,0,0,0,0,0,0,0,0.277064115484183,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.323292113637624,0,0,0,0,0,0,1.95157929807353,1.85541675650079,1.16193942869518,1.34759371519982,1.51392510525377,0.72995471815166,0,0,0,0,0,0.118306800039844,1.34867752062481,0.723033089650446,1.10293972732394,0.653638332277218,1.18635309555548,0.674156540800822,0.588664395376038,1.15424147083917,0,1.40241773803446,0.4115740113314,0,0,1.96565443335525,0.590789906681404,0,0.983907508344908,0,0,0,0,0,0.325808305310325,0,0,0,0,44.7535988059329,42.1316816444716,58.5982788882563,0.790204397959275,2.57545848628462,0.984868024349589,22.6984137185061,14.4172227420066,0,0,0,0,0,0,0,0,0.207328115540772,0.288239906833923,0.12624243342638,0.126995788584338,0,0,1.71072446022705,0.102827492703324,0.600686115687835,0.285826432630578,0,0.43596006883328,0,0,3.57656445851882,0,0,0,0.257207374262142,0,0,0,0,0,0,0,0,0.602878754119172,2.61460037580088,0,0,0.502257091432126,2.10833939483032,0.239624855491583,4.59447743336456,0,0.289562613335158,0.205476322550383,0.358121926479791,0,0,0.215627574859517,0.128343036279748,0,0,8.50617694055465,0.502548796003046,3.82763250991898,0,0,0,0.12269149171914,0,0,1.24782516918484,0,0,0.117141414992713,0,0,0,0.664225598535437,0.184369168541703,0,0,0,0,0.431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0,0.402547587182052,0|short_description=p1@SLC30A3}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=7781 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11014 | |||
|TSSclassifier=S | |||
|UniProt=Q99726 | |||
|association_with_transcript=36bp_to_NM_003459,uc002rjk.2_5end | |||
|description=CAGE_peak_1_at_SLC30A3_5end | |||
|id=chr2:27485902..27485923,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002138;1.17e-08;6!CL:0002139;4.01e-08;24!CL:0000115;2.37e-07;36 | |||
|ontology_enrichment_celltype_v019_2=CL:0000115,3.20e-09,36;CL:0005020,1.26e-08,6;CL:0002138,1.26e-08,6;CL:0005022,1.26e-08,6;CL:0002139,4.74e-08,24;CL:0000213,4.73e-07,58;CL:0000215,4.73e-07,58 | |||
|ontology_enrichment_development_v019=CL:0005022;1.17e-08;6 | |||
|ontology_enrichment_disease=DOID:0050687!3.65e-10!143;DOID:305!2.08e-08!106;DOID:162!8.20e-07!235 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002619!3.49e-13!22;UBERON:0001950!7.30e-12!20;UBERON:0000956!1.47e-10!25;UBERON:0000203!1.47e-10!25;UBERON:0005743!2.93e-10!86;UBERON:0000073!3.04e-10!94;UBERON:0001016!3.04e-10!94;UBERON:0001017!3.05e-10!82;UBERON:0001869!1.14e-08!32;UBERON:0007023!1.14e-08!115;UBERON:0001893!1.85e-08!34;UBERON:0002020!2.16e-08!34;UBERON:0003528!2.16e-08!34;UBERON:0002346!5.59e-08!90;UBERON:0002791!7.53e-08!33;UBERON:0000955!5.87e-07!69;UBERON:0006238!5.87e-07!69;UBERON:0001049!6.32e-07!57;UBERON:0005068!6.32e-07!57;UBERON:0006241!6.32e-07!57;UBERON:0007135!6.32e-07!57 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;3.01e-23;22!UBERON:0001950;5.62e-21;20!UBERON:0000956;9.68e-20;25!UBERON:0000203;9.68e-20;25!UBERON:0001869;4.15e-16;32!UBERON:0001893;7.58e-15;34!UBERON:0002791;3.14e-14;32!UBERON:0003528;5.35e-14;34!UBERON:0002020;5.35e-14;34!UBERON:0000200;9.47e-10;6!UBERON:0002780;3.28e-09;41!UBERON:0001890;3.28e-09;41!UBERON:0000349;6.56e-08;5!UBERON:0001871;6.57e-08;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002619,3.00e-23,22;UBERON:0001950,6.22e-21,20;UBERON:0000956,9.63e-20,25;UBERON:0000203,9.63e-20,25;UBERON:0001869,9.38e-18,32;UBERON:0001893,2.63e-16,34;UBERON:0003528,3.95e-16,34;UBERON:0002020,3.95e-16,34;UBERON:0001017,6.05e-16,81;UBERON:0002791,7.52e-16,32;UBERON:0001016,4.12e-15,89;UBERON:0002780,2.28e-12,41;UBERON:0001890,2.28e-12,41;UBERON:0003080,2.28e-12,41;UBERON:0006240,2.28e-12,41;UBERON:0007023,2.27e-11,114;UBERON:0000955,4.13e-11,68;UBERON:0006238,4.13e-11,68;UBERON:0001049,5.37e-11,56;UBERON:0005068,5.37e-11,56;UBERON:0006241,5.37e-11,56;UBERON:0007135,5.37e-11,56;UBERON:0000073,5.52e-10,53;UBERON:0002616,5.52e-10,53;UBERON:0002346,5.91e-10,86;UBERON:0000200,9.26e-10,6;UBERON:0004111,2.23e-09,240;UBERON:0000025,3.60e-09,192;UBERON:0003075,2.03e-08,82;UBERON:0007284,2.03e-08,82;UBERON:0000349,5.76e-08,5;UBERON:0001871,6.97e-08,6;UBERON:0003056,1.11e-07,61;UBERON:0011216,6.09e-07,223 | |||
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| |||
|short_description=p1@SLC30A3 | |||
}} |
Revision as of 18:06, 12 September 2013
Short description: | p1@SLC30A3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_SLC30A3_5end |
Coexpression cluster: | NA |
Association with transcript: | 36bp_to_NM_003459, uc002rjk.2_5end |
EntrezGene: | SLC30A3 |
HGNC: | 11014 |
UniProt: | Q99726 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 3.20e-09 | 36 |
lymphangioblast | 1.26e-08 | 6 |
endothelial cell of lymphatic vessel | 1.26e-08 | 6 |
vascular lymphangioblast | 1.26e-08 | 6 |
endothelial cell of vascular tree | 4.74e-08 | 24 |
lining cell | 4.73e-07 | 58 |
barrier cell | 4.73e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
regional part of cerebral cortex | 3.00e-23 | 22 |
neocortex | 6.22e-21 | 20 |
cerebral cortex | 9.63e-20 | 25 |
pallium | 9.63e-20 | 25 |
cerebral hemisphere | 9.38e-18 | 32 |
telencephalon | 2.63e-16 | 34 |
brain grey matter | 3.95e-16 | 34 |
gray matter | 3.95e-16 | 34 |
central nervous system | 6.05e-16 | 81 |
regional part of telencephalon | 7.52e-16 | 32 |
nervous system | 4.12e-15 | 89 |
regional part of forebrain | 2.28e-12 | 41 |
forebrain | 2.28e-12 | 41 |
anterior neural tube | 2.28e-12 | 41 |
future forebrain | 2.28e-12 | 41 |
adult organism | 2.27e-11 | 114 |
brain | 4.13e-11 | 68 |
future brain | 4.13e-11 | 68 |
neural tube | 5.37e-11 | 56 |
neural rod | 5.37e-11 | 56 |
future spinal cord | 5.37e-11 | 56 |
neural keel | 5.37e-11 | 56 |
regional part of nervous system | 5.52e-10 | 53 |
regional part of brain | 5.52e-10 | 53 |
neurectoderm | 5.91e-10 | 86 |
gyrus | 9.26e-10 | 6 |
anatomical conduit | 2.23e-09 | 240 |
tube | 3.60e-09 | 192 |
neural plate | 2.03e-08 | 82 |
presumptive neural plate | 2.03e-08 | 82 |
limbic system | 5.76e-08 | 5 |
temporal lobe | 6.97e-08 | 6 |
pre-chordal neural plate | 1.11e-07 | 61 |
organ system subdivision | 6.09e-07 | 223 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.