FFCP PHASE1:Hg19::chr2:216289849..216289895,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C79|description=CAGE_peak_at_chr2:216289849..216289895,+|id=chr2:216289849..216289895,+|ontology_enrichment_celltype=CL:0000055!4.34e-35!180;CL:0000057!5.76e-25!75;CL:0002371!3.48e-20!591;CL:0000144!2.55e-19!625;CL:0000548!6.70e-14!679;CL:0000004!6.70e-14!679;CL:0000255!6.70e-14!679;CL:0000012!2.59e-13!682;CL:0000220!5.34e-13!246;CL:0000183!5.47e-13!59;CL:0000680!6.31e-13!57;CL:0000056!6.31e-13!57;CL:0000355!6.31e-13!57;CL:0002321!9.32e-13!248;CL:0000187!1.16e-11!54;CL:0002620!1.83e-10!23;CL:0000222!3.30e-10!119;CL:0000048!4.40e-10!430;CL:0000393!5.30e-10!60;CL:0000211!5.30e-10!60;CL:0000723!1.50e-09!436;CL:0000034!3.99e-09!444;CL:0000192!3.28e-08!42;CL:0000514!3.28e-08!42;CL:0002334!2.36e-07!12;CL:0000003!3.80e-07!722;CL:0002494!8.21e-07!16|ontology_enrichment_celltype_v019=CL:0000134;5.57e-15;55!CL:0000723;1.04e-13;61!CL:0000048;1.07e-12;58!CL:0002620;3.52e-11;23!CL:0002320;2.57e-10;188!CL:0000057;3.61e-10;73!CL:0000034;4.10e-10;69!CL:0000349;2.31e-09;19!CL:0002334;8.10e-08;12!CL:0002494;1.30e-07;16!CL:0000187;1.76e-07;55!CL:0002570;4.27e-07;8|ontology_enrichment_celltype_v019_2=CL:0000057,4.70e-26,76;CL:0000048,2.34e-21,427;CL:0000723,1.35e-20,433;CL:0000034,4.10e-19,441;CL:0000680,3.84e-14,58;CL:0000056,3.84e-14,58;CL:0000355,3.84e-14,58;CL:0002320,7.04e-13,361;CL:0000187,1.22e-12,55;CL:0002620,3.21e-11,23;CL:0000134,1.13e-10,354;CL:0000393,4.46e-10,61;CL:0000211,4.46e-10,61;CL:0000349,3.13e-09,19;CL:0000192,2.75e-08,43;CL:0000514,2.75e-08,43;CL:0000219,4.07e-08,386;CL:0002334,7.24e-08,12;CL:0002494,1.11e-07,16;CL:0002570,4.32e-07,8;CL:0000222,8.19e-07,121;CL:0000499,8.53e-07,28|ontology_enrichment_development_v019=CL:0000355;2.91e-07;58|ontology_enrichment_disease=DOID:2394!8.29e-07!14|ontology_enrichment_disease_v019=DOID:2394;1.72e-07;14|ontology_enrichment_disease_v019_2=DOID:2394,1.67e-07,14|ontology_enrichment_uberon=UBERON:0005256!2.44e-17!143;UBERON:0000914!6.59e-16!83;UBERON:0002329!6.59e-16!83;UBERON:0003077!6.59e-16!83;UBERON:0003059!6.59e-16!83;UBERON:0007282!6.59e-16!83;UBERON:0009618!6.59e-16!83;UBERON:0007285!6.59e-16!83;UBERON:0004290!6.94e-14!70;UBERON:0000486!1.12e-13!82;UBERON:0002100!3.17e-11!216;UBERON:0002385!7.18e-11!63;UBERON:0001015!7.18e-11!63;UBERON:0000383!7.18e-11!63;UBERON:0001134!8.23e-11!61;UBERON:0002036!8.23e-11!61;UBERON:0003082!8.23e-11!61;UBERON:0000490!2.00e-10!138;UBERON:0003914!3.53e-10!118;UBERON:0002199!1.72e-09!45;UBERON:0002416!1.72e-09!45;UBERON:0004872!1.97e-09!84;UBERON:0002049!5.95e-09!79;UBERON:0007798!5.95e-09!79;UBERON:0003102!8.76e-09!95;UBERON:0004923!1.91e-08!57;UBERON:0000468!4.64e-08!659;UBERON:0002097!5.26e-08!40;UBERON:0000475!8.08e-08!365;UBERON:0004535!3.30e-07!110;UBERON:0000119!4.36e-07!312;UBERON:0001013!5.52e-07!14;UBERON:0001637!7.59e-07!42;UBERON:0003509!7.59e-07!42;UBERON:0004572!7.59e-07!42;UBERON:0000478!8.41e-07!24;UBERON:0000483!9.44e-07!309|ontology_enrichment_uberon_v019=UBERON:0002384;1.93e-09;198!UBERON:0001013;2.16e-08;14!UBERON:0000478;6.39e-08;24!UBERON:0002199;1.19e-07;46!UBERON:0002416;1.19e-07;46!UBERON:0002097;2.57e-07;41!UBERON:0004923;4.08e-07;55!UBERON:0002204;7.69e-07;70|ontology_enrichment_uberon_v019_2=UBERON:0007503,1.08e-16,78;UBERON:0002329,1.84e-15,71;UBERON:0003059,1.84e-15,71;UBERON:0007282,1.84e-15,71;UBERON:0004290,1.84e-15,71;UBERON:0009618,1.84e-15,71;UBERON:0007524,1.89e-15,73;UBERON:0003077,5.37e-15,72;UBERON:0007285,5.37e-15,72;UBERON:0005256,7.64e-15,122;UBERON:0000486,3.82e-14,83;UBERON:0002384,3.63e-13,371;UBERON:0003104,4.56e-13,160;UBERON:0009142,4.56e-13,160;UBERON:0001134,2.91e-12,62;UBERON:0002036,2.91e-12,62;UBERON:0003082,2.91e-12,62;UBERON:0002385,4.77e-12,64;UBERON:0001015,4.77e-12,64;UBERON:0000383,4.77e-12,64;UBERON:0002199,3.51e-11,46;UBERON:0002416,3.51e-11,46;UBERON:0000490,4.29e-11,148;UBERON:0000926,7.95e-11,315;UBERON:0004120,7.95e-11,315;UBERON:0006603,7.95e-11,315;UBERON:0004923,1.27e-09,66;UBERON:0002097,2.27e-09,41;UBERON:0003102,1.53e-08,99;UBERON:0001013,1.90e-08,14;UBERON:0004872,4.27e-08,83;UBERON:0000478,7.88e-08,24;UBERON:0003914,1.03e-07,117;UBERON:0001637,2.46e-07,42;UBERON:0003509,2.46e-07,42;UBERON:0004572,2.46e-07,42;UBERON:0002100,3.44e-07,199;UBERON:0005631,5.66e-07,14;UBERON:0000158,5.66e-07,14|phase1_expression=11.4457378940451,7.49351833618441,8.88012745804618,29.0212565224078,15.6436383049551,26.1701557230111,2.53299878168311,3.79031924056099,1.56711376919903,0.737201809504527,2.09340350391728,3.71350332621293,7.3854753903967,3.7129905888014,15.2442792834841,8.74022690387308,3.01347264011988,2.19093027116212,6.34312638427659,0.61560529038394,2.65200898617529,1.56727360739044,0.286235987131057,0.684372125364421,2.63639543149086,0,0,0,0,0,0,0,0,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C79 | |||
|description=CAGE_peak_at_chr2:216289849..216289895,+ | |||
|id=chr2:216289849..216289895,+ | |||
|ontology_enrichment_celltype=CL:0000055!4.34e-35!180;CL:0000057!5.76e-25!75;CL:0002371!3.48e-20!591;CL:0000144!2.55e-19!625;CL:0000548!6.70e-14!679;CL:0000004!6.70e-14!679;CL:0000255!6.70e-14!679;CL:0000012!2.59e-13!682;CL:0000220!5.34e-13!246;CL:0000183!5.47e-13!59;CL:0000680!6.31e-13!57;CL:0000056!6.31e-13!57;CL:0000355!6.31e-13!57;CL:0002321!9.32e-13!248;CL:0000187!1.16e-11!54;CL:0002620!1.83e-10!23;CL:0000222!3.30e-10!119;CL:0000048!4.40e-10!430;CL:0000393!5.30e-10!60;CL:0000211!5.30e-10!60;CL:0000723!1.50e-09!436;CL:0000034!3.99e-09!444;CL:0000192!3.28e-08!42;CL:0000514!3.28e-08!42;CL:0002334!2.36e-07!12;CL:0000003!3.80e-07!722;CL:0002494!8.21e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:0000134;5.57e-15;55!CL:0000723;1.04e-13;61!CL:0000048;1.07e-12;58!CL:0002620;3.52e-11;23!CL:0002320;2.57e-10;188!CL:0000057;3.61e-10;73!CL:0000034;4.10e-10;69!CL:0000349;2.31e-09;19!CL:0002334;8.10e-08;12!CL:0002494;1.30e-07;16!CL:0000187;1.76e-07;55!CL:0002570;4.27e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,4.70e-26,76;CL:0000048,2.34e-21,427;CL:0000723,1.35e-20,433;CL:0000034,4.10e-19,441;CL:0000680,3.84e-14,58;CL:0000056,3.84e-14,58;CL:0000355,3.84e-14,58;CL:0002320,7.04e-13,361;CL:0000187,1.22e-12,55;CL:0002620,3.21e-11,23;CL:0000134,1.13e-10,354;CL:0000393,4.46e-10,61;CL:0000211,4.46e-10,61;CL:0000349,3.13e-09,19;CL:0000192,2.75e-08,43;CL:0000514,2.75e-08,43;CL:0000219,4.07e-08,386;CL:0002334,7.24e-08,12;CL:0002494,1.11e-07,16;CL:0002570,4.32e-07,8;CL:0000222,8.19e-07,121;CL:0000499,8.53e-07,28 | |||
|ontology_enrichment_development_v019=CL:0000355;2.91e-07;58 | |||
|ontology_enrichment_disease=DOID:2394!8.29e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;1.72e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.67e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0005256!2.44e-17!143;UBERON:0000914!6.59e-16!83;UBERON:0002329!6.59e-16!83;UBERON:0003077!6.59e-16!83;UBERON:0003059!6.59e-16!83;UBERON:0007282!6.59e-16!83;UBERON:0009618!6.59e-16!83;UBERON:0007285!6.59e-16!83;UBERON:0004290!6.94e-14!70;UBERON:0000486!1.12e-13!82;UBERON:0002100!3.17e-11!216;UBERON:0002385!7.18e-11!63;UBERON:0001015!7.18e-11!63;UBERON:0000383!7.18e-11!63;UBERON:0001134!8.23e-11!61;UBERON:0002036!8.23e-11!61;UBERON:0003082!8.23e-11!61;UBERON:0000490!2.00e-10!138;UBERON:0003914!3.53e-10!118;UBERON:0002199!1.72e-09!45;UBERON:0002416!1.72e-09!45;UBERON:0004872!1.97e-09!84;UBERON:0002049!5.95e-09!79;UBERON:0007798!5.95e-09!79;UBERON:0003102!8.76e-09!95;UBERON:0004923!1.91e-08!57;UBERON:0000468!4.64e-08!659;UBERON:0002097!5.26e-08!40;UBERON:0000475!8.08e-08!365;UBERON:0004535!3.30e-07!110;UBERON:0000119!4.36e-07!312;UBERON:0001013!5.52e-07!14;UBERON:0001637!7.59e-07!42;UBERON:0003509!7.59e-07!42;UBERON:0004572!7.59e-07!42;UBERON:0000478!8.41e-07!24;UBERON:0000483!9.44e-07!309 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;1.93e-09;198!UBERON:0001013;2.16e-08;14!UBERON:0000478;6.39e-08;24!UBERON:0002199;1.19e-07;46!UBERON:0002416;1.19e-07;46!UBERON:0002097;2.57e-07;41!UBERON:0004923;4.08e-07;55!UBERON:0002204;7.69e-07;70 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,1.08e-16,78;UBERON:0002329,1.84e-15,71;UBERON:0003059,1.84e-15,71;UBERON:0007282,1.84e-15,71;UBERON:0004290,1.84e-15,71;UBERON:0009618,1.84e-15,71;UBERON:0007524,1.89e-15,73;UBERON:0003077,5.37e-15,72;UBERON:0007285,5.37e-15,72;UBERON:0005256,7.64e-15,122;UBERON:0000486,3.82e-14,83;UBERON:0002384,3.63e-13,371;UBERON:0003104,4.56e-13,160;UBERON:0009142,4.56e-13,160;UBERON:0001134,2.91e-12,62;UBERON:0002036,2.91e-12,62;UBERON:0003082,2.91e-12,62;UBERON:0002385,4.77e-12,64;UBERON:0001015,4.77e-12,64;UBERON:0000383,4.77e-12,64;UBERON:0002199,3.51e-11,46;UBERON:0002416,3.51e-11,46;UBERON:0000490,4.29e-11,148;UBERON:0000926,7.95e-11,315;UBERON:0004120,7.95e-11,315;UBERON:0006603,7.95e-11,315;UBERON:0004923,1.27e-09,66;UBERON:0002097,2.27e-09,41;UBERON:0003102,1.53e-08,99;UBERON:0001013,1.90e-08,14;UBERON:0004872,4.27e-08,83;UBERON:0000478,7.88e-08,24;UBERON:0003914,1.03e-07,117;UBERON:0001637,2.46e-07,42;UBERON:0003509,2.46e-07,42;UBERON:0004572,2.46e-07,42;UBERON:0002100,3.44e-07,199;UBERON:0005631,5.66e-07,14;UBERON:0000158,5.66e-07,14 | |||
|phase1_expression=11.4457378940451,7.49351833618441,8.88012745804618,29.0212565224078,15.6436383049551,26.1701557230111,2.53299878168311,3.79031924056099,1.56711376919903,0.737201809504527,2.09340350391728,3.71350332621293,7.3854753903967,3.7129905888014,15.2442792834841,8.74022690387308,3.01347264011988,2.19093027116212,6.34312638427659,0.61560529038394,2.65200898617529,1.56727360739044,0.286235987131057,0.684372125364421,2.63639543149086,0,0,0,0,0,0,0,0,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,22.8038292299236,7.67175371061182,2.89151321907653,1.50401373190767,1.59331170856906,2.3858578411533,56.9362798254084,0.756278537312543,4.43458794925128,2.0202000709419,0.261958150995425,0,0,0,0,0.132957960518865,0,0,0,0,0,0.347140501607594,1.69592382577203,2.51699661725944,1.6507082516404,1.46296476575767,0.775250277507987,0.71153252537342,0,0,0,0.488124115096339,0,5.67099363517232,0.625098097988558,0.22452937262617,0.225222960966644,0,0,0.549605231791222,0,0,0.436094052142534,47.7093073627506,13.6760952597746,26.7466545242702,47.9017156650519,7.09336764396714,6.72813120170769,4.2699598291882,12.0867098724408,4.35695449559673,13.8751992231779,11.769257024169,6.35701196108712,11.5235184896,0.234321431833797,8.74048215124897,0.570471821544449,11.8064457635923,6.81120092133836,8.41739310714284,4.49442581447195,2.44985005505872,4.17636678860011,2.6864703105699,0,4.94533858557114,1.82032272387605,4.31170885089743,2.35670559535693,1.37630371859161,0.277064115484183,2.19488810440419,10.4205850571667,8.41333129876942,5.21788042536097,19.553470290086,7.47450860864986,8.05341224406335,32.109747281031,3.7098910525838,27.0522567047911,4.46680455195816,23.1223575170535,5.06672426838233,43.6710429442318,12.610836113995,5.33431987502079,23.4306331060965,2.41805035746337,4.74769658469365,2.70565194428616,1.09098448236334,0.286804595389004,0.121973706129595,0,0.464775771478074,0.207322110030741,0.756962552626885,0,4.69348596989448,9.00537313470039,1.38134921352481,20.8965567614391,26.7095408217747,0.118306800039844,0,0,0,0,0,0,0,0,0,11.2193419042757,3.7041661019826,7.3504355692771,6.33775174109154,1.96565443335525,0.590789906681404,0,1.35287282397425,1.20097467208968,1.20725313949488,0,0,0.0925884451585296,0.977424915930974,1.03993478527958,1.44331342025273,0,6.80970426567766,0.288732895522148,1.38895653772983,1.33177906564219,0,0,0,0,0,0,3.69560682037491,0.708875486211932,13.2546613600215,3.19697332365358,3.83382679165211,0,0,0,0,0,0.063497894292169,0.381988425558278,0,0,0.925447434329912,0,0.285826432630578,0.560655421726804,4.3596006883328,1.24675085895615,4.00742318849111,28.6125156681506,6.762422020448,1.06375246633948,1.04007436911366,1.80045161983499,11.3479305618623,5.59486575933809,1.71573592389777,7.05408087008876,6.58592269424615,7.16619605446217,1.42156779497018,2.37585561880029,1.50719688529793,0.871533458600294,0.899756920638513,0,0,0,7.18874566474748,3.44585807502342,0,8.83165970672233,11.9176267079222,3.40215830155802,0,0,0,0,0,0,0,0.167516265334349,0.637938751653163,0,0,0,4.04881922673162,15.50528615285,18.7172866352818,32.2354835372751,32.6525049498806,18.9242898040722,11.2455758393005,2.10662269809403,2.27407504055985,12.4167685551006,1.99267679560631,2.76553752812555,2.43274120510632,3.72022199179207,7.89229874764969,0,0,0,0.909382714338778,4.99306318531491,6.65258645325297,13.8940372378515,40.6674229213366,31.7145906709373,13.5827498211043,5.11707249066703,19.7850323006637,38.5886972756977,6.01417805830357,8.16783936440384,1.8067974323038,0.519254429183621,7.55367459989735,2.05461064305758,9.62431057455767,0.0920809889358963,1.7222167224691,3.27764102412091,1.57349297951309,0,0.539107359730903,0,0,0.633309773357254,1.13733384070897,0.340187410553031,1.72732732881711,3.08454505380579,2.98041081298238,4.51520796469368,0,0.831076008928724,1.34324852833307,0,0,0,1.31205858279882,0,2.06082023295445,0,0.082509499920588,1.14853107599234,1.30012049207304,8.03419649220798,3.19013370364003,17.0993964997255,18.4204409671355,10.0620697913707,18.04660113787,17.6920366575359,6.30677042879147,4.09547363974992,8.92538542949282,7.87979276196935,1.65896526242959,2.73126008309985,1.39453664789186,43.4441038626283,0,5.23657086299351,0,0,1.66791797193528,0.286249773483982,5.95453390975468,5.06207079549961,5.14701523594327,1.27948895655667,1.71175595213568,3.5002357271853,0.78494864019923,4.67668389716618,3.56898138656871,2.94531005864216,0.202182481573316,1.58510321173008,2.94880919367287,0.48763373908959,2.92456187557541,0,2.45699840534374,3.25232493493539,9.04064932961942,1.10273068709225,6.6343897524122,2.19225442626881,1.73632660280006,7.21484227251296,2.02910376962704,1.8589409885985,2.81695602532241,2.15117028306077,3.7334635584986,1.78335525740625,0.354761064070598,5.48879851773927,21.4041680423936,0.379473173765715,1.74967360122491,0.192444225451024,1.340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| |||
|short_description=p@chr2:216289849..216289895,+ | |||
}} |
Revision as of 16:39, 12 September 2013
Short description: | p@chr2:216289849..216289895, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr2:216289849..216289895, + |
Coexpression cluster: | C79_chorionic_Chondrocyte_Cardiac_Smooth_Fibroblast_Preadipocyte_Mesenchymal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 4.70e-26 | 76 |
multi fate stem cell | 2.34e-21 | 427 |
somatic stem cell | 1.35e-20 | 433 |
stem cell | 4.10e-19 | 441 |
muscle precursor cell | 3.84e-14 | 58 |
myoblast | 3.84e-14 | 58 |
multi-potent skeletal muscle stem cell | 3.84e-14 | 58 |
connective tissue cell | 7.04e-13 | 361 |
muscle cell | 1.22e-12 | 55 |
skin fibroblast | 3.21e-11 | 23 |
mesenchymal cell | 1.13e-10 | 354 |
electrically responsive cell | 4.46e-10 | 61 |
electrically active cell | 4.46e-10 | 61 |
extraembryonic cell | 3.13e-09 | 19 |
smooth muscle cell | 2.75e-08 | 43 |
smooth muscle myoblast | 2.75e-08 | 43 |
motile cell | 4.07e-08 | 386 |
preadipocyte | 7.24e-08 | 12 |
cardiocyte | 1.11e-07 | 16 |
mesenchymal stem cell of adipose | 4.32e-07 | 8 |
mesodermal cell | 8.19e-07 | 121 |
stromal cell | 8.53e-07 | 28 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.67e-07 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.