FFCP PHASE1:Hg19::chr11:34937973..34938014,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8050 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21350 | |||
|TSSclassifier=strong | |||
|UniProt=O00330 | |||
|association_with_transcript=-104bp_to_ENST00000227868_5end | |||
|description=CAGE_peak_2_at_PDHX_5end | |||
|id=chr11:34937973..34938014,+ | |||
|ontology_enrichment_celltype=CL:0000037!1.54e-16!172;CL:0000566!1.54e-16!172;CL:0000988!2.28e-14!182;CL:0002032!4.10e-14!165;CL:0000837!4.10e-14!165;CL:0002087!8.26e-14!119;CL:0000738!2.08e-13!140;CL:0002031!7.16e-13!124;CL:0000542!5.63e-11!53;CL:0000051!5.63e-11!53;CL:0000838!7.39e-11!52;CL:0000791!3.36e-09!18;CL:0000789!3.36e-09!18;CL:0002420!3.36e-09!18;CL:0002419!3.36e-09!18;CL:0000790!3.36e-09!18;CL:0000084!9.99e-09!25;CL:0000827!9.99e-09!25;CL:0000625!8.45e-07!11 | |||
|ontology_enrichment_celltype_v019=CL:0000084;1.02e-10;25!CL:0000791;1.10e-10;18!CL:0000789;1.10e-10;18!CL:0002419;1.10e-10;18!CL:0000625;1.08e-08;11!CL:0000542;7.42e-07;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,1.30e-14,168;CL:0000988,4.28e-13,177;CL:0002087,3.80e-12,115;CL:0000738,5.92e-12,136;CL:0002032,1.13e-11,161;CL:0000837,1.13e-11,161;CL:0000838,2.06e-11,52;CL:0002031,4.05e-11,120;CL:0000542,5.43e-11,53;CL:0000051,5.43e-11,53;CL:0000084,9.65e-11,25;CL:0000827,9.65e-11,25;CL:0000791,1.38e-10,18;CL:0000789,1.38e-10,18;CL:0002420,1.38e-10,18;CL:0002419,1.38e-10,18;CL:0000790,1.38e-10,18;CL:0000625,1.04e-08,11 | |||
|ontology_enrichment_development_v019=CL:0000790;1.10e-10;18!CL:0000051;7.42e-07;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.62e-17!115;UBERON:0001017!9.36e-13!82;UBERON:0001049!1.75e-12!57;UBERON:0005068!1.75e-12!57;UBERON:0006241!1.75e-12!57;UBERON:0007135!1.75e-12!57;UBERON:0005743!6.89e-12!86;UBERON:0002780!4.57e-11!41;UBERON:0001890!4.57e-11!41;UBERON:0006240!4.57e-11!41;UBERON:0000073!8.98e-11!94;UBERON:0001016!8.98e-11!94;UBERON:0003080!2.76e-10!42;UBERON:0002616!4.42e-10!59;UBERON:0001893!4.67e-10!34;UBERON:0002020!8.74e-10!34;UBERON:0003528!8.74e-10!34;UBERON:0000955!1.46e-09!69;UBERON:0006238!1.46e-09!69;UBERON:0002791!1.61e-09!33;UBERON:0001869!1.84e-09!32;UBERON:0001950!9.53e-09!20;UBERON:0002619!4.10e-08!22;UBERON:0000956!8.08e-07!25;UBERON:0000203!8.08e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0001893;7.70e-11;34!UBERON:0003528;1.05e-10;34!UBERON:0002020;1.05e-10;34!UBERON:0001869;1.51e-10;32!UBERON:0002791;2.88e-10;32!UBERON:0001950;2.94e-10;20!UBERON:0002619;6.39e-10;22!UBERON:0002780;8.91e-10;41!UBERON:0001890;8.91e-10;41!UBERON:0000073;1.68e-08;53!UBERON:0002616;1.68e-08;53!UBERON:0000956;4.34e-08;25!UBERON:0000203;4.34e-08;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.72e-16,114;UBERON:0001049,6.71e-16,56;UBERON:0005068,6.71e-16,56;UBERON:0006241,6.71e-16,56;UBERON:0007135,6.71e-16,56;UBERON:0000073,2.64e-15,53;UBERON:0002616,2.64e-15,53;UBERON:0001017,1.15e-14,81;UBERON:0001016,3.64e-13,89;UBERON:0002780,7.31e-13,41;UBERON:0001890,7.31e-13,41;UBERON:0003080,7.31e-13,41;UBERON:0006240,7.31e-13,41;UBERON:0001893,8.19e-13,34;UBERON:0003528,2.02e-12,34;UBERON:0002020,2.02e-12,34;UBERON:0001869,6.64e-12,32;UBERON:0002791,2.44e-11,32;UBERON:0000955,2.52e-11,68;UBERON:0006238,2.52e-11,68;UBERON:0001950,1.85e-10,20;UBERON:0002619,2.92e-10,22;UBERON:0002346,7.85e-10,86;UBERON:0003075,1.76e-09,82;UBERON:0007284,1.76e-09,82;UBERON:0000956,2.24e-08,25;UBERON:0000203,2.24e-08,25;UBERON:0003056,6.64e-07,61 | |||
|phase1_expression=0.908391896352783,0.428201047781966,2.11431606143957,1.0007329835313,0.893922188854576,0.872338524100369,0,0,0.261185628199839,0,0,0.218441372130172,0,0.37129905888014,0,0,0.602694528023977,0,0,0.246242116153576,0,0,0.572471974262113,0,0.376627918784408,0.534893840235659,0.246301768349837,0.472264687882075,1.18009283054671,1.15148819429164,0.77408061658038,0,0,0,0.774672005803016,0.284338464974843,2.05520307534393,1.10799081706375,1.60435557976113,0.868043482863407,1.56740831967947,2.91504299417082,0.515151135268373,0.726991193897824,0.755751887377619,0.970336244751265,0.232429036905685,0.822335776043652,1.23882548358041,0.863077176966451,0.768482119587302,2.36482229888585,0,0,0,0.752969358170419,0.272906150057846,1.57306439111559,0.918251677112708,0.320929027076094,0,0.329851300186716,0.199463657621632,0.426224750532694,0,1.13477044938228,1.24564449799115,0.502497330513487,0.521482918420201,1.52032191293582,0.605399502633369,0,0.632924774881769,2.11255286311942,2.97646019951061,1.04829322754188,1.46027220490444,3.90459921387916,1.92870704036496,1.14005097496499,2.98375015798635,1.0959849225878,3.51992488922645,2.18455444504853,0,5.12076267079809,0.800791974072025,1.72425731986345,1.98313461835459,2.86216126360609,3.98449078376614,2.34894875748376,2.6759125968766,1.32171328579026,1.12101712596307,3.423993102076,4.32761494250433,2.35806457649499,1.23360899399706,1.67186495390678,6.8443675993054,7.101717086021,1.94826728407911,0.891283655081389,0.883817722424512,3.98761010250518,0.541607727530031,0.768547918354051,1.30059347559878,0.657751618414705,0.552700035571697,1.15921234294021,7.1177550317789,10.9691739516782,3.1360657141493,1.24640276967323,3.06576394881537,4.12352934579156,4.30133476433155,2.86708872891687,1.30216690771284,4.75226022224187,3.16207750063323,3.83959833463255,2.49861453104692,3.31488152861624,4.10563998460523,3.42731463482045,0.802320587350522,2.17236605824198,0,0,0.511450247374121,1.0843174571537,1.00267582127178,0.289693037921647,0,0.973269740605272,0.283604451492204,0,0.351339142772504,2.75056058545197,0,0,0.324547393654683,0.522389211897802,0.531831842075461,2.62339686735876,2.85997455390064,2.22874500797739,0.79504962946682,0.860234595106124,0.694281003215189,1.13061588384802,0.838998872419812,0.275118041940067,0.626984899610432,1.29208379584664,1.06729878806013,1.00416183829401,0,0.760272105718513,0.24406205754817,0,0,1.69669483739752,1.57170560838319,0.788280363383256,1.53316637465883,1.89853131913626,0.916008719652036,0,0,0,1.49091585508596,0.379891534993739,0.397227542439656,0.286836620748814,1.06400514659507,0,0,0,0.622422070799533,0.404132016209064,0.653847612453835,0.302714855289863,0,0,0,1.71141546463335,0.298897361103602,0.822041490506354,0.647491777472526,0.702254033511242,1.22492502752936,0.61417158655884,0.309977343527296,3.56400857184616,0.494533858557114,0,0,2.02003336744879,0.500474079487857,1.10825646193673,0,0.612975591598039,0.150238058906597,0.567160915800105,1.07633781413317,1.92201649936711,0.423863802319124,0.900273288253207,0.824420233907511,0.772921620136887,1.11670113798954,0.843881661206331,1.07180705677318,0,0.460249493211497,0.484938170456436,0,0.906768884048762,0.339121184620975,0,0.272746120590835,0.286804595389004,0.487894824518382,0.132529768321485,0.232387885739037,0.621966330092223,0.504641701751257,0.36497735907583,0,0.643240938192885,0,2.3218396401599,0.721879481669586,0.946454400318751,0.842923450390509,0.241011029883482,0.441175890929576,0,0.949082476444386,0.539325232640658,0.392442930250692,1.15424147083917,0,0,0,0,0,0,0.590789906681404,3.5317047953172,0.368965315629341,0.343135620597051,0,0,0.402115889646523,0,0,0,0,0.695582429850461,0.234817388471643,0.577465791044295,0.462985512576611,0.570762456703795,0,0,1.72351904261178,0.702012795417713,1.18904929830983,0.93733833986777,0,0.141775097242386,0.0895585227028483,0,0,0.985326475791887,1.67292024625129,0.829312462163088,0.288239906833923,0.50496973370552,0.317489471460845,0.381988425558278,0,0,0,0.300343057843917,0.285826432630578,0.224262168690721,0,1.0267360014933,0.258543431515556,0,3.381211010224,0,0,0,0,0.532844358032199,0.142977993658148,0.542621605391443,0,1.62868092146868,0.355391948742546,0,0.301439377059586,0,0.399891964728228,1.2162378064119,0.502257091432126,0,0.958499421966331,1.14861935834114,0,0.289562613335158,0.205476322550383,0.716243852959582,0.784596007954691,2.1673383622212,1.94064817373566,1.54011643535698,2.7950408664471,5.20559415430487,3.09315525111078,5.02548796003046,3.18969375826582,0,0,0.414415513436035,0.36807447515742,0,0.271265023699736,1.03985430765404,0.713715955188647,0.315404830067869,0.468565659970853,1.20378439891088,0,2.0694614258501,0.664225598535437,0.184369168541703,0.434418072340414,0,0.343143423810856,1.86091223510599,2.80428461064202,1.38745825144478,0,0,0,0.992431231275107,0.61384789315225,0,1.02511319404561,1.53512174720011,0.804269605718038,0,0.308419387605311,0,0.492762936082855,0.519254429183621,0.464841513839837,0.604297247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| |||
|short_description=p2@PDHX | |||
}} |
Revision as of 07:13, 11 January 2014
Short description: | p2@PDHX |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_PDHX_5end |
Coexpression cluster: | NA |
Association with transcript: | -104bp_to_ENST00000227868_5end |
EntrezGene: | PDHX |
HGNC: | 21350 |
UniProt: | O00330 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 1.30e-14 | 168 |
hematopoietic cell | 4.28e-13 | 177 |
nongranular leukocyte | 3.80e-12 | 115 |
leukocyte | 5.92e-12 | 136 |
hematopoietic oligopotent progenitor cell | 1.13e-11 | 161 |
hematopoietic multipotent progenitor cell | 1.13e-11 | 161 |
lymphoid lineage restricted progenitor cell | 2.06e-11 | 52 |
hematopoietic lineage restricted progenitor cell | 4.05e-11 | 120 |
lymphocyte | 5.43e-11 | 53 |
common lymphoid progenitor | 5.43e-11 | 53 |
T cell | 9.65e-11 | 25 |
pro-T cell | 9.65e-11 | 25 |
mature alpha-beta T cell | 1.38e-10 | 18 |
alpha-beta T cell | 1.38e-10 | 18 |
immature T cell | 1.38e-10 | 18 |
mature T cell | 1.38e-10 | 18 |
immature alpha-beta T cell | 1.38e-10 | 18 |
CD8-positive, alpha-beta T cell | 1.04e-08 | 11 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.72e-16 | 114 |
neural tube | 6.71e-16 | 56 |
neural rod | 6.71e-16 | 56 |
future spinal cord | 6.71e-16 | 56 |
neural keel | 6.71e-16 | 56 |
regional part of nervous system | 2.64e-15 | 53 |
regional part of brain | 2.64e-15 | 53 |
central nervous system | 1.15e-14 | 81 |
nervous system | 3.64e-13 | 89 |
regional part of forebrain | 7.31e-13 | 41 |
forebrain | 7.31e-13 | 41 |
anterior neural tube | 7.31e-13 | 41 |
future forebrain | 7.31e-13 | 41 |
telencephalon | 8.19e-13 | 34 |
brain grey matter | 2.02e-12 | 34 |
gray matter | 2.02e-12 | 34 |
cerebral hemisphere | 6.64e-12 | 32 |
regional part of telencephalon | 2.44e-11 | 32 |
brain | 2.52e-11 | 68 |
future brain | 2.52e-11 | 68 |
neocortex | 1.85e-10 | 20 |
regional part of cerebral cortex | 2.92e-10 | 22 |
neurectoderm | 7.85e-10 | 86 |
neural plate | 1.76e-09 | 82 |
presumptive neural plate | 1.76e-09 | 82 |
cerebral cortex | 2.24e-08 | 25 |
pallium | 2.24e-08 | 25 |
pre-chordal neural plate | 6.64e-07 | 61 |