FFCP PHASE1:Hg19::chr12:57522258..57522313,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4035 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6692 | |||
|TSSclassifier=strong | |||
|UniProt=Q07954,Q7Z7K9,Q59FG2,Q6PJ72 | |||
|association_with_transcript=0bp_to_ENST00000243077,ENST00000553277,NM_002332,uc001snb.2,uc001snc.1,uc001snd.2,uc010sre.1_5end | |||
|description=CAGE_peak_1_at_LRP1_5end | |||
|id=chr12:57522258..57522313,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.19e-21!180;CL:0000057!1.03e-15!75;CL:0000680!4.59e-09!57;CL:0000056!4.59e-09!57;CL:0000355!4.59e-09!57;CL:0000187!3.38e-08!54;CL:0000183!4.20e-08!59;CL:0000136!4.28e-08!15;CL:0000048!4.66e-08!430;CL:0002620!2.01e-07!23;CL:0000723!3.89e-07!436;CL:0000393!7.01e-07!60;CL:0000211!7.01e-07!60;CL:0000192!9.72e-07!42;CL:0000514!9.72e-07!42 | |||
|ontology_enrichment_celltype_v019=CL:0000134;5.02e-08;55!CL:0002620;1.97e-07;23!CL:0000136;2.21e-07;13!CL:0000048;5.75e-07;58!CL:0000723;8.46e-07;61!CL:0000057;8.75e-07;73 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,3.12e-16,76;CL:0000680,1.54e-09,58;CL:0000056,1.54e-09,58;CL:0000355,1.54e-09,58;CL:0000048,1.88e-09,427;CL:0000187,1.17e-08,55;CL:0000723,2.05e-08,433;CL:0000136,4.15e-08,15;CL:0000473,6.21e-08,48;CL:0000234,6.21e-08,48;CL:0000034,9.74e-08,441;CL:0002620,1.96e-07,23;CL:0000393,2.73e-07,61;CL:0000211,2.73e-07,61;CL:0000192,3.40e-07,43;CL:0000514,3.40e-07,43;CL:0002194,4.32e-07,59;CL:0000576,4.32e-07,59;CL:0000040,4.32e-07,59;CL:0000559,4.32e-07,59 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!5.53e-20!659;UBERON:0000062!3.19e-15!511;UBERON:0000467!3.30e-15!625;UBERON:0000480!6.72e-15!626;UBERON:0002204!6.16e-13!167;UBERON:0000922!2.54e-12!612;UBERON:0002050!4.00e-12!605;UBERON:0005423!4.00e-12!605;UBERON:0000923!6.01e-12!604;UBERON:0005291!6.01e-12!604;UBERON:0006598!6.01e-12!604;UBERON:0002532!6.01e-12!604;UBERON:0000475!9.99e-12!365;UBERON:0000914!2.13e-10!83;UBERON:0002329!2.13e-10!83;UBERON:0003077!2.13e-10!83;UBERON:0003059!2.13e-10!83;UBERON:0007282!2.13e-10!83;UBERON:0009618!2.13e-10!83;UBERON:0007285!2.13e-10!83;UBERON:0004290!2.48e-09!70;UBERON:0000479!5.53e-09!787;UBERON:0002385!6.08e-09!63;UBERON:0001015!6.08e-09!63;UBERON:0000383!6.08e-09!63;UBERON:0001134!1.09e-08!61;UBERON:0002036!1.09e-08!61;UBERON:0003082!1.09e-08!61;UBERON:0007023!1.61e-08!115;UBERON:0000486!4.77e-08!82;UBERON:0005256!2.05e-07!143;UBERON:0000926!2.36e-07!448;UBERON:0004120!2.36e-07!448;UBERON:0006603!2.36e-07!448;UBERON:0000481!2.57e-07!347 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;3.64e-07;198 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002204,2.95e-15,167;UBERON:0000923,7.90e-15,560;UBERON:0010316,7.90e-15,560;UBERON:0005291,7.90e-15,560;UBERON:0006598,7.90e-15,560;UBERON:0010317,7.90e-15,560;UBERON:0002532,7.90e-15,560;UBERON:0002050,1.47e-14,564;UBERON:0000926,1.91e-12,315;UBERON:0004120,1.91e-12,315;UBERON:0006603,1.91e-12,315;UBERON:0005423,4.67e-12,581;UBERON:0000922,7.08e-12,592;UBERON:0000479,3.29e-11,773;UBERON:0007524,2.96e-10,73;UBERON:0003077,6.13e-10,72;UBERON:0007285,6.13e-10,72;UBERON:0002329,8.76e-10,71;UBERON:0003059,8.76e-10,71;UBERON:0007282,8.76e-10,71;UBERON:0004290,8.76e-10,71;UBERON:0009618,8.76e-10,71;UBERON:0002385,2.12e-09,64;UBERON:0001015,2.12e-09,64;UBERON:0000383,2.12e-09,64;UBERON:0001134,3.83e-09,62;UBERON:0002036,3.83e-09,62;UBERON:0003082,3.83e-09,62;UBERON:0010314,1.79e-08,132;UBERON:0000486,1.89e-08,83;UBERON:0005256,2.48e-08,122;UBERON:0007023,2.61e-08,114;UBERON:0003104,8.00e-08,160;UBERON:0009142,8.00e-08,160;UBERON:0007503,2.78e-07,78 | |||
|phase1_expression=106.281851873276,174.706027495042,123.194149179879,125.091622941413,129.618717383913,111.659331084847,113.98494517574,90.9676617734637,332.750490326594,29.9795402531841,23.0274385430901,31.8924403310052,42.7302504730095,114.607642841003,256.170171437679,103.538072553573,97.6365135398843,73.0310090387373,71.7261214222045,62.2992553868547,98.3283331797299,158.294634346434,15.4567433050771,13.5505680822155,16.4460857869192,0.229240217243854,0.328402357799783,0.0787107813136792,78.6728553697808,43.7565513830822,109.764631431098,9.19421224478927,16.2651196140255,19.227208528673,0.309868802321207,0.284338464974843,0,117.447026608758,138.776757649338,95.9188048564065,172.190999690502,107.85659078432,178.499868370491,154.267531345118,119.408798205664,117.168101553715,101.106631053973,71.1320446277759,51.4112575685872,91.773873150766,70.9565157085609,47.0599637478285,102.734212859512,72.9397692449724,90.735746018209,131.204910661195,90.0590295190891,54.3830832357105,114.781459639088,79.2694696877951,85.0318377312725,101.924051757695,80.7827813367609,68.6221848357638,118.115160121834,90.2142507258912,62.2822248995575,107.534428729886,84.4802327840726,52.7768892633433,91.4153248976387,76.2334706494259,48.7352076658962,25.561889643745,37.8435653937778,31.6584554717648,62.0054043928653,58.8693419938705,86.309640056332,30.7813763240548,25.8591680358817,33.7928684464573,0,0,0.889509253863555,3.41384178053206,0.400395987036012,0.574752439954483,0.661044872784862,0,0.569212969109448,4.11066032559657,2.29363936875137,5.28685314316103,2.80254281490768,0.790152254325231,1.37696839079683,1.57204305099666,1.64481199199607,0,0,0.946895611469467,0,0.111410456885174,0,0,0,0.25618263945135,0,0,0,0,0.741432815810302,1.33770414044857,2.09071047609954,0.113309342697566,0.766440987203842,0,0.506039384039006,4.45991580053735,1.95325036156926,2.85135613334512,7.22760571573309,5.11946444617674,6.24653632761729,7.34009481336452,0,1.61285394579786,1.33720097891754,1.01377082717959,338.891544176407,73.7770945674,58.6889158861804,63.9747299720682,170.956227526838,170.918892373772,197.230914868673,464.249666268715,19.7577767872902,28.3813628752082,23.6275573514509,62.5425085501578,33.8794618112064,22.9886354526346,55.8221517086055,56.5921646222618,67.8085598646212,5.96226560763355,1.14398982156026,2.22874500797739,0.198762407366705,10.3228151412735,0.694281003215189,0.56530794192401,0.838998872419812,0.825354125820202,0.208994966536811,0.258416759169329,0.71153252537342,0.33472061276467,0.402829317109147,0,1.22031028774085,0,4.86085168729056,0.357198913136319,1.12264686313085,0.788280363383256,1.53316637465883,0,2.38162267109529,2.63560834872127,0,18.3159501899864,158.534052590807,80.9168969536665,245.089393685268,749.50409001665,99.6618153977383,70.6453776179307,80.0617467972787,76.4669400093196,86.8278788765348,29.5016371832617,33.6731520413725,330.110549693595,331.301156575999,75.9201439141501,110.504667197933,27.3826474341336,88.1747215255626,21.7253822490965,24.604687543956,22.7530306857643,113.509719217721,67.4360402041606,216.260860000877,168.696405734052,209.929622957495,67.351940783414,132.944356236004,41.2423479187462,54.1763191045605,55.4128230968366,96.5750765937843,115.852386812029,207.02804517329,10.889489583362,350.168568864659,229.360635591141,136.272212445598,307.593373486512,137.98733665027,349.618212841919,136.237538834724,364.388101308894,125.98604767343,313.52274761119,159.430424448462,257.825460626005,365.304870699596,83.7249936271691,53.4115865778036,14.8810856935739,14.1827982707234,9.46455164783713,24.1507938136599,23.4577689929029,30.7913948604224,20.6285499480587,22.9611974296822,14.5990943630332,107.950177307573,153.7345842281,91.1690480926372,145.811529402041,125.607029810508,3.90412440131485,4.88895601226495,4.33819853790268,4.85293480022533,4.35758888184812,3.55905928666645,3.50561401216427,3.13954344200554,3.46272441251751,0,47.6822030931716,139.112015830013,245.504548013855,201.540505366711,198.53109776888,249.313340619553,0,28.5333177420023,45.9801731600048,10.9750285408626,3.37205259772859,1.80952150340936,10.2773174125968,81.1262680222708,115.432761166033,23.0930147240437,27.127714764168,177.052310907619,0.144366447761074,0,0.190254152234598,2.37061319387782,1.71697232418975,190.079528699471,60.8411089362018,136.592038143341,1.87467667973554,18.3100519736757,8.50650583454319,3.58234090811393,2.90633938513962,6.51750554580859,0,0.088048434013226,3.7319060797339,1.15295962733569,2.5248486685276,13.2075620127712,51.9504258759258,19.926966025708,70.1397028693091,19.7428785990381,27.6315613216404,31.4409075893636,60.7750477151855,112.477697758986,15.4743783082205,83.5095283795244,808.303567625254,32.966807349684,117.544647530513,81.1258007908656,52.470304349477,25.5328437641901,52.4851692661716,87.3595541251282,365.726962033833,71.6219092999269,30.6192013236111,94.1788664167746,15.8390374586686,93.4462068884717,115.042416535239,63.6827953829703,64.4606037398309,97.9401328292647,113.850327320837,88.1819468209024,149.320516584348,115.535893082982,91.0674418939073,159.244149976547,112.987467804374,0,4.53170748464433,1.07813787429759,6.16046574142792,19.5652860651297,26.0279707715243,17.0123538811093,21.4420819627966,12.1208362814101,0,0,0,211.274748740359,108.53700306995,200.193587490405,125.822371226138,101.526094625585,117.961406445383,256.89112307902,144.755073969033,134.170427393031,156.244337651682,63.1014318608665,99.0062435068946,119.899387965954,357.337112369502,301.966212953553,46.3160378515268,51.3399797948308,39.382468829471,8.18444442904901,59.9167582237789,55.0350333860018,118.595532137375,435.985466111385,237.157779795947,148.256995688846,150.441931225611,151.363539796135,154.354789102791,56.5949576255746,98.9018809994118,71.0399899519449,91.3887795363173,72.6314865374745,29.6105651499474,47.7205399321818,6.53775021444864,63.8368331795213,67.3737321624853,118.143097878441,5.86559496779635,5.77615028283111,8.62784746094541,5.84556898613043,3.58875538235777,0,0.680374821106063,2.80690690932781,0,14.9020540649119,21.5726602757587,1.52925763827023,1.66215201785745,3.1342465661105,5.26223703950243,4.44440266742331,9.4886546293064,54.1224165404514,16.2689197332152,98.9193711818134,21.5188242323107,17.2444854834029,16.0794350638928,7.80072295243825,107.658232995587,97.2507426018747,37.7419111930879,60.6339515168212,27.015968206968,96.570800136578,100.351552188646,40.7383279048962,88.3197793615635,11.7352289906294,13.4533047155574,18.5038433117147,12.0377759218104,12.5508298310267,601.291582446523,128.951894979711,109.967988122864,60.6828874561405,110.481489993534,60.9716680851897,18.3199855029749,75.9203073493721,58.2138141482456,82.73350416294,136.13762497763,256.763392820352,133.645364128893,57.3012507345438,58.278676256994,74.948609117943,54.5471422860528,55.8023649142352,61.8190252574732,74.5627467542997,98.9896490351868,87.0057157983685,72.8986012621613,57.875962436986,121.184455184332,172.902418428971,120.197644893055,89.5642616575647,71.9059451816171,222.249805158408,147.576319210492,44.2344621778695,31.6019968061745,42.2543403798362,42.1629375479911,59.4406698129383,57.7807103399625,86.9164606972965,213.852034556534,249.934823756566,106.2524886544,168.668535158082,8.37132380711955,24.8011841948241,8.71127878890581,102.240167643582,30.1353760869861,26.9554361068201,27.0492393657372,10.1078296091062,9.64150457541122,7.64637207142375,23.3555346741407,13.579211201094,15.2204041041892,13.6179395350471,17.8210374288578,18.2418790547682,7.79815719230554,15.3996776842137,8.33136734335508,0,1.15415370381156,0,0.478278818186467,0,0.383010740264733,0.423347165447766,0,0,0,0,0,0,0,0,6.38769356535489,0.687010689511529,0.614481528616916,1.11838053946208,0.500547425135725,0,0,2.46174797895425,0,0,0,4.49137296979728,262.542657255234,5.82530504397664,0.334330152832435,2.55722532125772,61.3573325775863,35.0418323382514,85.0835144814873,44.7366441494834,114.504904958157,42.9651601388417,0,17.7345342827515,156.808166753592,40.0611677520164,5.54252045279407,8.89737537768747,0.492339221844278,81.8034115550554,0.988551862620595,0,0,96.0786770903733,11.974154617347,74.4617833969067,55.2519665274275,71.8025079772729,37.9266216202269,0.260427761085233,2.36141999989728,86.2749494767404,6.03105275913148,9.40738506083235,1.18193840883968,4.13692047889758,17.7878814163785,9.37574972639778,44.287069290692,116.978545466646,42.7228861687833,157.243707622201,61.7694523612914,68.8870147063474,7.08100012873436,23.2837652945267,143.589182368085,58.2243905378176,43.8071418337314,58.701499443991,25.6407797735939,64.4382342658477,64.0267177879018,81.0212859548325,0,0,0.166211681900156,0.225595660617181,0.392125068635479,0.167821586975843,0.37950746544837,0.476809736941136,2.10998064528027,1.95879369790977,12.015011071885,9.30471150890992,55.7346681403963,107.918228694074,57.4368336237608,0.593042257361244,0.741383633679017,0.208843899010911,63.6940706667398,55.3778576636164,49.4297980480466,0.182454789215666,3.32629852184552,3.88448607254548,42.2205311048848,33.8774004936259,47.441278052726,241.625480499338,0.150323419414493,1.34794648816421,16.6163468176796,15.5566219261484,10.3597863074384,11.9472429772959,19.6380586760557,13.1740939362482,3.47119476670262,24.0081373665225,4.35296032902013,95.4007608601485,17.02661721469,0.870806981601766,1.31560770755134,1.23173185579814,89.9088182847648,15.003541537555,88.3584696451882,10.4151862731531,9.33958675004052,57.9926890955849,4.69323318563527,15.470652308546,105.872685390719,18.382484081556,10.0863292007874,5.61229321212987,10.8104848653038,0.14405479798815,17.1468499080297,7.30651507312066,51.9154067201206,48.7449263815473,11.2198039399954,28.3171578103489,22.815970970972,86.2503887019556,2.55493176133945,49.852791204715,1.31443677139657,131.262728597959,115.038532853865,216.079780397621,41.3335531032912,73.3976542313536,123.636987422797,49.3126688052571,199.606135482492,81.5471646692177,54.9906612504421,57.443853291673,54.9338882411607,1.47641222272123,0,47.7137813885582,122.855472312641,14.7892896587818,18.0176661942376,15.3712925070798,3.59958226482401,5.41661368190565,70.4694857233086,16.436299692364,21.5927637999803,41.8063067435935,20.4864652847649,5.37862017998534,5.37362552494447,75.7577045955769,45.0222539848493,11.187815656809,136.292900040182,97.6570285057433,80.9936653071335,16.7622268187482,0.410462603746695,61.3396878427518,14.2773235315358,141.129801031993,38.4269977845442,78.4747545114612,100.232312120959,6.50129983960452,11.2770403570668,98.6715692125499,54.5498938695841,55.5080334165242,26.2967991560334,0.592834895693833,0.121792598380896,8.93677760878255,412.365494954061,358.987928240507,363.019508464702,271.150665597008,1.41348686625211,28.3541817589436,48.0783483713735,108.540536922535,24.083186218983,125.571686339717,87.121253326761,4.84220222276808,3.62443183090109,3.03298235083296,19.6971080146028,7.76377205003967,0.468334905806882,1.44921028610825,98.8066795111106,188.139214427016,90.433355424926,235.996144572761,209.05292635639,184.190922870483,168.88397047693,215.655297286379,123.57257446331,96.8451232432102,108.958988739972,155.182073696444,93.3130370826319,158.832477603048,145.149576148665,76.1747790245131,147.102199208277,134.043434683416,68.3542831783832,112.018774068777,71.5354309902973,135.961891644399,116.642095388694,68.4047477573993,116.75453976215,129.985302663645,131.232294157797,11.7498096548455,45.2471757801093,2.3489486276869,63.4776591434363,8.79785402430569,22.7605135191015,26.1469707978972,38.9089823422825,28.7262104948106,13.428375091887,10.2244440283585,17.9078987092257,5.63731340893483,15.1989350361727,17.9277374144655,109.362422996019,2.14346339723327,2.39156712564054,3.27130788511688,24.8983485123274,19.1702868827901,0.422624246717254,0,1.70706767510625,0,31.213377446176,141.761581693917,9.23204750948334,28.6155539615168,9.46418347647022,4.52864207866064,36.6429644524239,13.1051565830417,8.82609155760931,28.6976142137272,27.6376754297575,6.14509409770568,97.6273356505995,1.89268188003008,5.60399523799829,121.673200573286,69.2114778818233,69.1106462037905,32.5902125548845,125.152945500807,37.9465273845397,21.426094178846,71.7852280578582,82.8370062091396,22.8431072414647,39.8479737114164,2.24142474360707,29.3485757634686,4.15892398141218,163.994301050882,4.8325194824207,44.5572337540455,183.437990843838,36.1052072979301,21.1008783032935,17.0239351412925,6.05956094787358,1.33070477595341,62.809953695107,35.929592536237,119.051594784682,64.0499682958459,33.3654633501114,23.5750839748588,93.7839127155766,4.92439484206938,9.32665721769045,27.3207936297926,24.884995444193,26.0995209821752,21.8555703697246,78.0580857431222,0.921871900446234,104.436197747388,55.5312718420715,70.4426404858114,8.74634422541365,4.78295028135897,102.119513798519,102.596480215149,10.0897978792964,38.3526662613988,13.3875106555545,38.6978867188511,98.9235371404924,2.52821778772363,4.99838129082939,21.7322840378224,206.841532100405,85.5802757993342,83.4813352989415,98.158871977601,13.7672754822489,14.1998400876678,12.8672241186328,34.7177381156562,3.6657098967048,23.265478924824,7.64431151181946,18.4561462466357,1.07965256976767,17.1904274225,11.0062902321942,47.2248911538736,46.392577253528,73.8280709449892,1.16969731731053,10.3454403083911,15.3406917103063,5.87319626602592,4.06779911958088,2.41540549706678,73.932843467411,42.6191142982717,0,80.408649535281,5.18488403623577,62.2297840754376,85.5493632942008,77.3459981477622,157.862289544982,55.3565276901338,42.3488323986402,1.49911733887393,4.10674058793012,6.70500256259814,1.44434460040503,14.6067277649303,26.1475691540588,79.8401478153584,13.7261259108071,87.5730393658981,43.1987183436974,40.7350667196858,103.414615050357,137.728337332163,66.6244905670635,9.84098113713616,4.9169507383663,14.5703276163153,16.930145737169,17.9035661527926,23.8926738790597,9.0254714145255,82.9776745489721,37.2470140917088,32.3376081388924,96.5029851391482,84.0141888689865,40.4709533488359,5.74841297540454,13.4081382879053,23.6598230045094,48.8173703993525,24.4561798639445,50.0748520163011,32.1699303020164,16.9053653066615,79.8268146020488,61.8748263175585,7.40769744359868,12.380372121815,98.4668639663394,6.37758934956767,91.5099675373472,108.550402434385,78.9378585932533,189.074923868686,72.8611132799515,0.320568492303233 | |||
|short_description=p1@LRP1 | |||
}} |
Revision as of 14:07, 11 January 2014
Short description: | p1@LRP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LRP1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000243077, ENST00000553277, NM_002332, uc001snb.2, uc001snc.1, uc001snd.2, uc010sre.1_5end |
EntrezGene: | LRP1 |
HGNC: | 6692 |
UniProt: | Q07954Q7Z7K9Q59FG2Q6PJ72 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 3.12e-16 | 76 |
muscle precursor cell | 1.54e-09 | 58 |
myoblast | 1.54e-09 | 58 |
multi-potent skeletal muscle stem cell | 1.54e-09 | 58 |
multi fate stem cell | 1.88e-09 | 427 |
muscle cell | 1.17e-08 | 55 |
somatic stem cell | 2.05e-08 | 433 |
fat cell | 4.15e-08 | 15 |
defensive cell | 6.21e-08 | 48 |
phagocyte | 6.21e-08 | 48 |
stem cell | 9.74e-08 | 441 |
skin fibroblast | 1.96e-07 | 23 |
electrically responsive cell | 2.73e-07 | 61 |
electrically active cell | 2.73e-07 | 61 |
smooth muscle cell | 3.40e-07 | 43 |
smooth muscle myoblast | 3.40e-07 | 43 |
monopoietic cell | 4.32e-07 | 59 |
monocyte | 4.32e-07 | 59 |
monoblast | 4.32e-07 | 59 |
promonocyte | 4.32e-07 | 59 |