FFCP PHASE1:Hg19::chr13:112721490..112721504,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6656 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11189 | |||
|TSSclassifier=weak | |||
|UniProt=O00570 | |||
|association_with_transcript=-408bp_to_ENST00000330949,NM_005986,uc001vsb.1_5end | |||
|coexpression_cluster_id=C152 | |||
|description=CAGE_peak_2_at_SOX1_5end | |||
|id=chr13:112721490..112721504,+ | |||
|ontology_enrichment_celltype=CL:0002605!3.18e-09!3;CL:0000047!7.06e-09!8;CL:0002319!1.86e-08!25 | |||
|ontology_enrichment_celltype_v019=CL:0000047;1.87e-21;2!CL:0002605;4.13e-14;3!CL:0002319;4.20e-13;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0002605,2.42e-14,3;CL:0002319,3.54e-13,25;CL:0000047,4.08e-12,8 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:171;9.27e-10;10!DOID:3095;1.44e-07;22!DOID:2994;1.44e-07;22 | |||
|ontology_enrichment_disease_v019_2=DOID:171,9.01e-10,10;DOID:3095,1.44e-07,22;DOID:2994,1.44e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0001049!6.79e-66!57;UBERON:0005068!6.79e-66!57;UBERON:0006241!6.79e-66!57;UBERON:0007135!6.79e-66!57;UBERON:0001017!4.20e-64!82;UBERON:0005743!1.89e-63!86;UBERON:0001893!4.15e-61!34;UBERON:0002020!5.08e-61!34;UBERON:0003528!5.08e-61!34;UBERON:0001869!5.32e-61!32;UBERON:0002616!9.76e-60!59;UBERON:0002791!8.15e-59!33;UBERON:0002780!9.00e-57!41;UBERON:0001890!9.00e-57!41;UBERON:0006240!9.00e-57!41;UBERON:0000073!2.68e-56!94;UBERON:0001016!2.68e-56!94;UBERON:0003080!3.12e-55!42;UBERON:0000955!1.50e-54!69;UBERON:0006238!1.50e-54!69;UBERON:0002346!1.37e-52!90;UBERON:0003075!3.22e-47!86;UBERON:0007284!3.22e-47!86;UBERON:0000956!8.21e-45!25;UBERON:0000203!8.21e-45!25;UBERON:0003056!1.46e-40!61;UBERON:0002619!1.93e-37!22;UBERON:0001950!1.22e-32!20;UBERON:0000924!1.46e-32!173;UBERON:0006601!1.46e-32!173;UBERON:0000033!1.00e-30!123;UBERON:0007023!2.47e-30!115;UBERON:0004121!8.68e-29!169;UBERON:0000153!9.21e-29!129;UBERON:0007811!9.21e-29!129;UBERON:0002420!1.12e-17!9;UBERON:0007245!1.12e-17!9;UBERON:0010009!1.12e-17!9;UBERON:0010011!1.12e-17!9;UBERON:0000454!1.12e-17!9;UBERON:0002308!2.76e-17!9;UBERON:0000125!2.76e-17!9;UBERON:0001871!2.99e-15!7;UBERON:0000025!1.48e-14!194;UBERON:0000349!1.18e-13!5;UBERON:0009663!4.25e-13!7;UBERON:0003076!5.46e-12!15;UBERON:0003057!5.46e-12!15;UBERON:0004733!6.19e-12!12;UBERON:0002028!6.19e-12!12;UBERON:0007277!6.19e-12!12;UBERON:0000369!3.46e-11!4;UBERON:0002435!3.46e-11!4;UBERON:0000204!3.46e-11!4;UBERON:0010082!3.46e-11!4;UBERON:0004732!6.53e-11!13;UBERON:0002298!8.10e-11!8;UBERON:0000200!1.69e-10!6;UBERON:0004111!2.76e-10!241;UBERON:0000064!3.95e-10!219;UBERON:0001872!6.09e-09!5;UBERON:0002021!6.21e-09!5;UBERON:0005383!7.34e-09!3;UBERON:0005382!7.34e-09!3;UBERON:0001896!2.04e-08!3;UBERON:0005290!2.04e-08!3;UBERON:0010096!2.04e-08!3;UBERON:0000483!5.44e-08!309;UBERON:0002771!5.64e-08!3;UBERON:0000988!6.39e-08!3;UBERON:0000119!8.29e-08!312;UBERON:0000477!1.37e-07!286 | |||
|ontology_enrichment_uberon_v019=UBERON:0002346;1.60e-23;4!UBERON:0000923;1.60e-23;4!UBERON:0010316;1.60e-23;4!UBERON:0005291;1.60e-23;4!UBERON:0002050;5.96e-19;5!UBERON:0005423;5.96e-19;5!UBERON:0000956;6.10e-18;25!UBERON:0000203;6.10e-18;25!UBERON:0002791;1.62e-16;32!UBERON:0003528;1.88e-16;34!UBERON:0002020;1.88e-16;34!UBERON:0001869;8.68e-16;32!UBERON:0001893;1.01e-14;34!UBERON:0002902;3.28e-11;1!UBERON:0001874;3.28e-11;1!UBERON:0009899;3.28e-11;1!UBERON:0002619;1.10e-10;22!UBERON:0002021;7.85e-09;5!UBERON:0002780;1.77e-08;41!UBERON:0001890;1.77e-08;41!UBERON:0000922;1.81e-08;49!UBERON:0001950;9.89e-08;20!UBERON:0000073;2.14e-07;53!UBERON:0002616;2.14e-07;53!UBERON:0001017;3.17e-07;75!UBERON:0001016;7.92e-07;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.86e-18,81;UBERON:0002791,3.39e-18,32;UBERON:0001869,3.39e-18,32;UBERON:0000956,5.36e-18,25;UBERON:0000203,5.36e-18,25;UBERON:0003528,4.17e-17,34;UBERON:0002020,4.17e-17,34;UBERON:0001893,4.17e-17,34;UBERON:0001016,2.73e-16,89;UBERON:0002346,1.26e-14,86;UBERON:0004121,3.83e-14,171;UBERON:0000924,3.83e-14,171;UBERON:0006601,3.83e-14,171;UBERON:0002780,4.18e-14,41;UBERON:0001890,4.18e-14,41;UBERON:0003080,4.18e-14,41;UBERON:0006240,4.18e-14,41;UBERON:0001049,7.80e-13,56;UBERON:0005068,7.80e-13,56;UBERON:0006241,7.80e-13,56;UBERON:0007135,7.80e-13,56;UBERON:0002902,4.44e-11,1;UBERON:0009899,4.44e-11,1;UBERON:0001874,5.43e-11,1;UBERON:0000073,9.17e-11,53;UBERON:0002616,9.17e-11,53;UBERON:0002619,1.17e-10,22;UBERON:0000955,2.91e-10,68;UBERON:0006238,2.91e-10,68;UBERON:0003056,2.97e-09,61;UBERON:0002021,7.55e-09,5;UBERON:0003075,1.93e-08,82;UBERON:0007284,1.93e-08,82;UBERON:0010371,5.11e-08,104;UBERON:0001950,1.04e-07,20;UBERON:0011216,1.65e-07,223 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.313454721478088,1.71741592278634,1.91624195102038,0.627713197974014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392937226493138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0.116193942869518,0.932949495138334,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0.463721619900307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.317489471460845,0,0,0,0.514137463516618,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.81141936333695,3.90419561572865,0.773288812777695,0.837581326671744,3.82763250991898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0.642352300414798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.994147647766298,0.562677665642051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.93866549219044,0.463840490809256,0,0,0,0,0,0,1.41832609060762,0,0,0,0.885741385813839,0.60298219312704,0,0.110579259931225,0,0.87754158861589,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0,0,0,0,0,0.337005664903385,0,0.937057782901357,0,0,0,0,0,0.91821828489147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.823040347426423,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0.273810757783986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.38568906942791,0.681017030557878,0,0,0,0,0,0.91124334987037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113312091520126,0,0,0.129282956361551,0.66116300871345,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.854183854313742,0.1251909307065,0.573409195690071,0.332787154610557,0.931446044120752,0,0,0,0,0,0,8.55034068803868,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0.194860308839388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.46407332213534,1.48722917110803,0,0,0,0,0,0,0.706521476061055,0,0.319267718114302,0.615349092722265,1.76450187355203,1.31398779682014,0.322951291263702,0,0,0,0,0,0,0,0.795664888465099,0,0,0,0,0,0,0.607838261565552,0,0.413373593002368,0.697573912132975,1.64092442705466,0,0.496211178389294,40.6262574470724,0,0,0,0,0,0,0,0,0.271878931907327,0.920818829879887,0,0,0.078493092850514,1.09980912941201,0,0,0,0,0.714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.356760272332706,0,0,0,0,0,0,0,0,0,1.48523200163543,0,0,0,0,0,0.357107877211315,0,0,0,0,0,0,1.08786384305464,1.30905207102113,0,0,0,0,0,0,0,0.101988829741982,0,1.47031839255752,0,0.0757786982182394,0,0,0.310298987585686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p2@SOX1 | |||
}} |
Revision as of 18:45, 11 January 2014
Short description: | p2@SOX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SOX1_5end |
Coexpression cluster: | C152_peripheral_neuroectodermal_neuroepithelioma_neuroblastoma_testicular_carcinoid_lung |
Association with transcript: | -408bp_to_ENST00000330949, NM_005986, uc001vsb.1_5end |
EntrezGene: | SOX1 |
HGNC: | 11189 |
UniProt: | O00570 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebral cortex | 2.42e-14 | 3 |
neural cell | 3.54e-13 | 25 |
neuronal stem cell | 4.08e-12 | 8 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 9.01e-10 | 10 |
germ cell and embryonal cancer | 1.44e-07 | 22 |
germ cell cancer | 1.44e-07 | 22 |