FFCP PHASE1:Hg19::chr13:113344345..113344359,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23250 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13552 | |||
|TSSclassifier=weak | |||
|UniProt=P98196,E9PEJ6,Q659C3,Q6PJ25 | |||
|association_with_transcript=-283bp_to_ENST00000283558,ENST00000375630,ENST00000375645,ENST00000487903,NM_015205,NM_032189,uc001vsi.3,uc001vsj.3_5end | |||
|coexpression_cluster_id=C3354 | |||
|description=CAGE_peak_4_at_ATP11A_5end | |||
|id=chr13:113344345..113344359,+ | |||
|ontology_enrichment_celltype=CL:0000766!1.42e-19!76;CL:0002057!1.43e-16!42;CL:0000860!9.96e-16!45;CL:0000763!4.57e-15!112;CL:0000049!4.57e-15!112;CL:0002194!8.47e-15!63;CL:0000576!8.47e-15!63;CL:0000040!8.47e-15!63;CL:0000559!8.47e-15!63;CL:0000557!1.36e-14!71;CL:0000839!7.35e-14!70;CL:0002009!8.61e-14!65;CL:0000738!3.54e-13!140;CL:0000037!1.47e-12!172;CL:0000566!1.47e-12!172;CL:0002032!1.35e-11!165;CL:0000837!1.35e-11!165;CL:0000988!1.49e-10!182;CL:0002087!4.22e-10!119;CL:0002031!8.88e-09!124;CL:0000094!8.92e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.94e-13;33!CL:0002057;4.94e-13;33!CL:0000576;2.82e-12;48!CL:0000473;7.53e-12;39!CL:0000234;7.53e-12;39!CL:0000766;1.51e-10;69!CL:0000094;1.36e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,2.82e-23,72;CL:0000473,3.64e-19,48;CL:0000234,3.64e-19,48;CL:0000860,1.06e-18,42;CL:0002057,1.06e-18,42;CL:0002194,2.13e-17,59;CL:0000576,2.13e-17,59;CL:0000040,2.13e-17,59;CL:0000559,2.13e-17,59;CL:0000557,2.97e-17,67;CL:0000839,1.17e-16,66;CL:0000763,1.21e-16,108;CL:0000049,1.21e-16,108;CL:0002009,4.58e-16,61;CL:0000738,7.46e-13,136;CL:0000037,7.17e-12,168;CL:0002032,4.83e-11,161;CL:0000837,4.83e-11,161;CL:0002087,9.22e-10,115;CL:0000988,1.50e-09,177;CL:0002031,1.40e-08,120;CL:0000094,1.61e-07,8;CL:0002393,8.96e-07,9;CL:0002397,8.96e-07,9 | |||
|ontology_enrichment_development_v019=CL:0002057;1.30e-13;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!7.72e-17!115;UBERON:0002405!1.31e-13!115;UBERON:0002193!1.58e-13!112;UBERON:0002390!1.98e-13!102;UBERON:0003061!1.98e-13!102;UBERON:0001049!2.33e-11!57;UBERON:0005068!2.33e-11!57;UBERON:0006241!2.33e-11!57;UBERON:0007135!2.33e-11!57;UBERON:0002371!8.14e-11!80;UBERON:0001474!2.44e-10!86;UBERON:0002780!3.50e-09!41;UBERON:0001890!3.50e-09!41;UBERON:0006240!3.50e-09!41;UBERON:0003080!3.72e-09!42;UBERON:0002616!8.59e-08!59;UBERON:0002020!3.48e-07!34;UBERON:0003528!3.48e-07!34;UBERON:0000062!3.59e-07!511;UBERON:0000955!3.73e-07!69;UBERON:0006238!3.73e-07!69;UBERON:0001893!4.93e-07!34;UBERON:0002791!7.25e-07!33;UBERON:0004765!7.65e-07!101;UBERON:0001434!7.65e-07!101 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;3.52e-07;41!UBERON:0001890;3.52e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,9.56e-16,114;UBERON:0002193,4.98e-15,108;UBERON:0002390,8.62e-15,98;UBERON:0003061,8.62e-15,98;UBERON:0002405,6.46e-14,93;UBERON:0002371,8.60e-13,76;UBERON:0001474,4.89e-12,82;UBERON:0001049,1.39e-11,56;UBERON:0005068,1.39e-11,56;UBERON:0006241,1.39e-11,56;UBERON:0007135,1.39e-11,56;UBERON:0000073,3.76e-10,53;UBERON:0002616,3.76e-10,53;UBERON:0004765,1.81e-09,90;UBERON:0002780,7.04e-09,41;UBERON:0001890,7.04e-09,41;UBERON:0003080,7.04e-09,41;UBERON:0006240,7.04e-09,41;UBERON:0005172,3.32e-07,54;UBERON:0005173,3.32e-07,54;UBERON:0000955,3.60e-07,68;UBERON:0006238,3.60e-07,68;UBERON:0001434,5.28e-07,100;UBERON:0001016,9.45e-07,89 | |||
|phase1_expression=0,0,0.704772020479856,1.0007329835313,0.446961094427288,0,0,0,0.522371256399677,6.14334841253772,5.58240934377942,1.74753097704138,0.263766978228454,0.123766352960047,0,2.01697543935533,1.80808358407193,0,0.487932798790507,0.123121058076788,0.612002073732759,0,0,0.958120975510189,1.38096903554283,2.21598876669059,1.55991119954897,1.57421562627358,10.2274711980715,8.06041736004147,11.4563931253896,0,0.6024118375565,0,0.46480320348181,0.995184627411951,1.17440175733939,13.2958898047651,7.82123345133553,12.1526087600877,2.91090116511902,11.9840656427022,7.7272670290256,3.92575244704825,4.53451132426571,5.57943340731977,1.39457422143411,3.28934310417461,5.57471467611186,3.16461631554365,6.14785695669842,3.54723344832878,5.5159308917859,5.16387746867061,8.12558919566051,1.88242339542605,3.27487380069415,2.02251136000576,5.50951006267625,4.49300637906531,7.03270838378945,2.30895910130701,3.59034583718937,5.96714650745772,2.03146467040009,6.24123747160254,4.35975574296902,5.27622197039161,5.21482918420201,5.2125322729228,3.63239701580021,3.31449872388808,1.26584954976354,5.49263744411049,2.97646019951061,5.2414661377094,3.81917345898083,1.35159203557356,6.75047464127737,9.69043328720245,5.37075028437543,5.84525292046829,1.75996244461323,1.09227722252426,2.66852776159066,1.28019066769952,0,0,0.661044872784862,0,1.1384259382189,0.587237189370939,1.14681968437569,0,1.12101712596307,1.05353633910031,1.57367816091066,3.14408610199332,2.46721798799411,0.501559486172034,1.62961133316795,0,0,0.779873198196215,0.883817722424512,1.55073726208535,1.89562704635511,0.768547918354051,0.390178042679635,0.657751618414705,0.276350017785848,0.289803085735052,0.889719378972363,0.267540828089713,0,0.339928028092699,2.68254345521345,1.71813722741315,1.01207876807801,1.27426165729639,0.651083453856419,0,0.602300476311091,2.04778577847069,1.24930726552346,2.60454977248419,1.64225599384209,0.403213486449465,0.802320587350522,1.15859523106239,0,0,2.17366355134002,0,0,0.144846518960824,0,0,0.378139268656271,0,0.351339142772504,5.82856885964821,0.364295288292542,0,2.59637914923747,1.74129737299267,4.65352861816028,0.238490624305342,3.43196946468077,2.22874500797739,1.59009925893364,0.860234595106124,2.08284300964557,0.56530794192401,3.35599548967925,2.75118041940067,0.835979866147242,4.13466814670926,6.75955899104749,8.70273593188143,2.01414658554573,0,3.41686880567437,1.10298924103761,0.81014194788176,1.51809538082936,3.59246996201872,4.0540132973996,3.06633274931766,0,2.74802615895611,17.1314542666882,34.9002237733493,1.74437620857014,0.993943903390637,0.379891534993739,1.32409180813219,1.14734648299525,0.709336764396714,0.560677600142307,0,0.74000264525148,0.933633106199299,1.0776853765575,0.326923806226917,0.454072282934794,0,0.234321431833797,0,0.570471821544449,0.298897361103602,0.469737994575059,0.323745888736263,0.421352420106746,0,0,0.413303124703062,0,0,0,0,0.336672227908132,1.00094815897571,0.277064115484183,0.877955241761676,0.30648779579902,0.45071417671979,0.226864366320042,0.179389635688862,0,0.423863802319124,0,0.103052529238439,0,0.18611685633159,0.337552664482532,0.194874010322397,0.504867548488229,0.0920498986422993,0.646584227275248,0.710019185033229,0.201504196455281,0.67824236924195,0.57978255948989,1.09098448236334,1.14721838155602,1.09776335516636,0.397589304964456,1.97529702878181,1.96956004529204,1.7662459561294,1.45990943630332,0,0,0,0,0.721879481669586,1.8929088006375,1.18009283054671,1.20505514941741,0.992645754591546,1.08939722046203,0.71181185733329,1.34831308160164,0.392442930250692,1.15424147083917,2.95262181849859,0,0.4115740113314,1.47008711385542,2.53510069643662,1.96565443335525,2.95394953340702,0.882926198829301,5.04252598026766,0.343135620597051,0.548751427043128,1.1240175325762,0.804231779293047,0.370353780634118,0.325808305310325,0,0,0.34779121492523,0.587043471179108,1.58803092537181,1.38895653772983,0.951270761172991,0,0,1.47730203652438,3.7440682422278,4.60756603095058,1.87467667973554,0.671928512795438,0.425325291727159,0,0.581267877027924,0,0,1.67292024625129,4.35389042635621,3.60299883542404,3.53478813593864,1.14296209725904,0.381988425558278,1.17217447210047,0,0.102827492703324,0,0.571652865261156,0.112131084345361,0.43596006883328,0,0.646358578788889,0,1.690605505112,0,1.04007436911366,0.257207374262142,0,0,0.57191197463259,1.62786481617433,0.823240336780769,0.325736184293735,1.06617584622764,1.58390374586686,0.602878754119172,1.74306691720059,1.3996218765488,2.43247561282381,4.01805673145701,0,0.239624855491583,0,0,0.144781306667579,0.410952645100767,0.358121926479791,3.25046917581229,2.1673383622212,0.431255149719035,1.54011643535698,0.76228387266739,0,0.773288812777695,0.335032530668698,0,12.7331194071021,20.9413021442817,26.5225928599063,0,0,0,0.415941723061614,0,0,0,0.300946099727719,0,0,0,0.184369168541703,0.173767228936166,0,0.343143423810856,1.86091223510599,4.09856981555372,3.20182673410333,0,0,0.604780586659361,0.496215615637554,0.920771839728375,0.280660094433074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| |||
|short_description=p4@ATP11A | |||
}} |
Revision as of 18:45, 11 January 2014
Short description: | p4@ATP11A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_ATP11A_5end |
Coexpression cluster: | C3354_gall_bronchogenic_Eosinophils_Neutrophils_lung_CD14_granulocyte |
Association with transcript: | -283bp_to_ENST00000283558, ENST00000375630, ENST00000375645, ENST00000487903, NM_015205, NM_032189, uc001vsi.3, uc001vsj.3_5end |
EntrezGene: | ATP11A |
HGNC: | 13552 |
UniProt: | P98196E9PEJ6Q659C3Q6PJ25 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 2.82e-23 | 72 |
defensive cell | 3.64e-19 | 48 |
phagocyte | 3.64e-19 | 48 |
classical monocyte | 1.06e-18 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.06e-18 | 42 |
monopoietic cell | 2.13e-17 | 59 |
monocyte | 2.13e-17 | 59 |
monoblast | 2.13e-17 | 59 |
promonocyte | 2.13e-17 | 59 |
granulocyte monocyte progenitor cell | 2.97e-17 | 67 |
myeloid lineage restricted progenitor cell | 1.17e-16 | 66 |
myeloid cell | 1.21e-16 | 108 |
common myeloid progenitor | 1.21e-16 | 108 |
macrophage dendritic cell progenitor | 4.58e-16 | 61 |
leukocyte | 7.46e-13 | 136 |
hematopoietic stem cell | 7.17e-12 | 168 |
hematopoietic oligopotent progenitor cell | 4.83e-11 | 161 |
hematopoietic multipotent progenitor cell | 4.83e-11 | 161 |
nongranular leukocyte | 9.22e-10 | 115 |
hematopoietic cell | 1.50e-09 | 177 |
hematopoietic lineage restricted progenitor cell | 1.40e-08 | 120 |
granulocyte | 1.61e-07 | 8 |
intermediate monocyte | 8.96e-07 | 9 |
CD14-positive, CD16-positive monocyte | 8.96e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
adult organism | 9.56e-16 | 114 |
hemolymphoid system | 4.98e-15 | 108 |
hematopoietic system | 8.62e-15 | 98 |
blood island | 8.62e-15 | 98 |
immune system | 6.46e-14 | 93 |
bone marrow | 8.60e-13 | 76 |
bone element | 4.89e-12 | 82 |
neural tube | 1.39e-11 | 56 |
neural rod | 1.39e-11 | 56 |
future spinal cord | 1.39e-11 | 56 |
neural keel | 1.39e-11 | 56 |
regional part of nervous system | 3.76e-10 | 53 |
regional part of brain | 3.76e-10 | 53 |
skeletal element | 1.81e-09 | 90 |
regional part of forebrain | 7.04e-09 | 41 |
forebrain | 7.04e-09 | 41 |
anterior neural tube | 7.04e-09 | 41 |
future forebrain | 7.04e-09 | 41 |
abdomen element | 3.32e-07 | 54 |
abdominal segment element | 3.32e-07 | 54 |
brain | 3.60e-07 | 68 |
future brain | 3.60e-07 | 68 |
skeletal system | 5.28e-07 | 100 |
nervous system | 9.45e-07 | 89 |