FFCP PHASE1:Hg19::chr3:15469058..15469141,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=85403 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20907 | |||
|TSSclassifier=strong | |||
|UniProt=B4E3F5,F8WFA5,Q96JC9 | |||
|association_with_transcript=0bp_to_ENST00000432764,ENST00000449565,NM_033083,uc003bzu.2,uc011avq.1_5end | |||
|coexpression_cluster_id=C7 | |||
|description=CAGE_peak_1_at_EAF1_5end | |||
|id=chr3:15469058..15469141,+ | |||
|ontology_enrichment_celltype=CL:0000738!2.43e-26!140;CL:0002057!2.48e-25!42;CL:0000766!5.80e-25!76;CL:0000860!3.01e-23!45;CL:0000037!1.07e-22!172;CL:0000566!1.07e-22!172;CL:0002009!1.90e-22!65;CL:0000557!9.59e-22!71;CL:0002194!1.70e-21!63;CL:0000576!1.70e-21!63;CL:0000040!1.70e-21!63;CL:0000559!1.70e-21!63;CL:0002087!2.18e-21!119;CL:0002032!1.60e-20!165;CL:0000837!1.60e-20!165;CL:0002031!2.69e-20!124;CL:0000839!3.85e-20!70;CL:0000763!2.44e-19!112;CL:0000049!2.44e-19!112;CL:0000988!5.34e-19!182 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.26e-20;33!CL:0002057;1.26e-20;33!CL:0000473;1.30e-19;39!CL:0000234;1.30e-19;39!CL:0000576;2.78e-14;48!CL:0000766;3.72e-12;69!CL:0002087;1.48e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,4.30e-28,48;CL:0000234,4.30e-28,48;CL:0000738,7.14e-27,136;CL:0000766,4.81e-26,72;CL:0000860,2.48e-25,42;CL:0002057,2.48e-25,42;CL:0002009,1.33e-23,61;CL:0000037,4.96e-23,168;CL:0000557,9.46e-23,67;CL:0002194,1.22e-22,59;CL:0000576,1.22e-22,59;CL:0000040,1.22e-22,59;CL:0000559,1.22e-22,59;CL:0002087,6.54e-22,115;CL:0000839,4.43e-21,66;CL:0002032,7.71e-21,161;CL:0000837,7.71e-21,161;CL:0002031,9.21e-21,120;CL:0000763,7.66e-20,108;CL:0000049,7.66e-20,108;CL:0000988,1.13e-19,177 | |||
|ontology_enrichment_development_v019=CL:0002057;1.72e-18;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!4.84e-21!102;UBERON:0003061!4.84e-21!102;UBERON:0002193!1.67e-17!112;UBERON:0002371!2.67e-17!80;UBERON:0001474!1.84e-16!86;UBERON:0002405!2.77e-13!115;UBERON:0004765!3.10e-11!101;UBERON:0001434!3.10e-11!101;UBERON:0002780!4.05e-08!41;UBERON:0001890!4.05e-08!41;UBERON:0006240!4.05e-08!41;UBERON:0001049!5.14e-08!57;UBERON:0005068!5.14e-08!57;UBERON:0006241!5.14e-08!57;UBERON:0007135!5.14e-08!57;UBERON:0003080!1.09e-07!42;UBERON:0001017!2.20e-07!82;UBERON:0000073!2.39e-07!94;UBERON:0001016!2.39e-07!94;UBERON:0002020!5.13e-07!34;UBERON:0003528!5.13e-07!34;UBERON:0001869!5.55e-07!32;UBERON:0005743!6.25e-07!86;UBERON:0001893!6.71e-07!34 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.15e-21,98;UBERON:0003061,1.15e-21,98;UBERON:0002371,5.66e-18,76;UBERON:0002193,5.93e-18,108;UBERON:0001474,4.80e-17,82;UBERON:0002405,1.22e-14,93;UBERON:0004765,1.26e-13,90;UBERON:0001434,4.26e-10,100;UBERON:0001049,2.22e-08,56;UBERON:0005068,2.22e-08,56;UBERON:0006241,2.22e-08,56;UBERON:0007135,2.22e-08,56;UBERON:0000073,3.78e-08,53;UBERON:0002616,3.78e-08,53;UBERON:0002780,4.05e-08,41;UBERON:0001890,4.05e-08,41;UBERON:0003080,4.05e-08,41;UBERON:0006240,4.05e-08,41;UBERON:0001016,4.73e-08,89;UBERON:0001017,1.18e-07,81;UBERON:0003528,5.13e-07,34;UBERON:0002020,5.13e-07,34;UBERON:0001869,5.55e-07,32;UBERON:0001893,6.71e-07,34 | |||
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| |||
|short_description=p1@EAF1 | |||
}} |
Revision as of 17:37, 21 January 2014
Short description: | p1@EAF1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_EAF1_5end |
Coexpression cluster: | C7_CD14_Eosinophils_Neutrophils_Smooth_Basophils_Macrophage_Mast |
Association with transcript: | 0bp_to_ENST00000432764, ENST00000449565, NM_033083, uc003bzu.2, uc011avq.1_5end |
EntrezGene: | EAF1 |
HGNC: | 20907 |
UniProt: | B4E3F5F8WFA5Q96JC9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 4.30e-28 | 48 |
phagocyte | 4.30e-28 | 48 |
leukocyte | 7.14e-27 | 136 |
myeloid leukocyte | 4.81e-26 | 72 |
classical monocyte | 2.48e-25 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.48e-25 | 42 |
macrophage dendritic cell progenitor | 1.33e-23 | 61 |
hematopoietic stem cell | 4.96e-23 | 168 |
granulocyte monocyte progenitor cell | 9.46e-23 | 67 |
monopoietic cell | 1.22e-22 | 59 |
monocyte | 1.22e-22 | 59 |
monoblast | 1.22e-22 | 59 |
promonocyte | 1.22e-22 | 59 |
nongranular leukocyte | 6.54e-22 | 115 |
myeloid lineage restricted progenitor cell | 4.43e-21 | 66 |
hematopoietic oligopotent progenitor cell | 7.71e-21 | 161 |
hematopoietic multipotent progenitor cell | 7.71e-21 | 161 |
hematopoietic lineage restricted progenitor cell | 9.21e-21 | 120 |
myeloid cell | 7.66e-20 | 108 |
common myeloid progenitor | 7.66e-20 | 108 |
hematopoietic cell | 1.13e-19 | 177 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.15e-21 | 98 |
blood island | 1.15e-21 | 98 |
bone marrow | 5.66e-18 | 76 |
hemolymphoid system | 5.93e-18 | 108 |
bone element | 4.80e-17 | 82 |
immune system | 1.22e-14 | 93 |
skeletal element | 1.26e-13 | 90 |
skeletal system | 4.26e-10 | 100 |
neural tube | 2.22e-08 | 56 |
neural rod | 2.22e-08 | 56 |
future spinal cord | 2.22e-08 | 56 |
neural keel | 2.22e-08 | 56 |
regional part of nervous system | 3.78e-08 | 53 |
regional part of brain | 3.78e-08 | 53 |
regional part of forebrain | 4.05e-08 | 41 |
forebrain | 4.05e-08 | 41 |
anterior neural tube | 4.05e-08 | 41 |
future forebrain | 4.05e-08 | 41 |
nervous system | 4.73e-08 | 89 |
central nervous system | 1.18e-07 | 81 |
brain grey matter | 5.13e-07 | 34 |
gray matter | 5.13e-07 | 34 |
cerebral hemisphere | 5.55e-07 | 32 |
telencephalon | 6.71e-07 | 34 |