FFCP PHASE1:Hg19::chr6:138893690..138893714,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57224 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21021 | |||
|TSSclassifier=strong | |||
|UniProt=Q5SYE7 | |||
|association_with_transcript=-13bp_to_ENST00000427025_5end | |||
|coexpression_cluster_id=C3731 | |||
|description=CAGE_peak_9_at_NHSL1_5end | |||
|id=chr6:138893690..138893714,- | |||
|ontology_enrichment_celltype=CL:0000147!2.62e-14!14;CL:0000133!8.46e-12!59;CL:0000148!1.22e-10!10;CL:0000541!1.22e-10!10;CL:0000047!5.34e-09!8;CL:0002319!2.86e-08!25;CL:0000221!4.35e-08!71;CL:0000333!1.68e-07!41;CL:0000325!2.99e-07!39;CL:0000075!3.44e-07!27;CL:0000710!3.67e-07!20;CL:0000540!7.76e-07!6;CL:0000031!7.76e-07!6;CL:0000404!7.76e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0000147;3.01e-20;14!CL:0002319;1.11e-15;25!CL:0000148;9.86e-15;10!CL:0000149;3.30e-12;4!CL:0000075;2.58e-11;27!CL:0000710;6.80e-11;20!CL:0002567;2.23e-10;3!CL:0002586;2.02e-09;3!CL:0000540;1.72e-08;6!CL:0000404;1.72e-08;6!CL:0000182;2.23e-08;12!CL:0002077;6.39e-08;34!CL:0000047;2.49e-07;2!CL:0000123;7.55e-07;2!CL:0000242;7.55e-07;2!CL:0000128;8.80e-07;7!CL:0000126;8.80e-07;7!CL:0000127;8.80e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000147,2.19e-20,14;CL:0000133,6.82e-20,59;CL:0002319,1.58e-15,25;CL:0000221,2.59e-15,72;CL:0000148,9.95e-15,10;CL:0000541,9.95e-15,10;CL:0000047,1.69e-13,8;CL:0000149,2.09e-12,4;CL:0000333,6.09e-12,41;CL:0000075,2.19e-11,27;CL:0000710,6.12e-11,20;CL:0002567,2.25e-10,3;CL:0002586,1.28e-09,3;CL:0002077,1.41e-08,34;CL:0000182,2.20e-08,12;CL:0000540,2.22e-08,6;CL:0000031,2.22e-08,6;CL:0000404,2.22e-08,6;CL:0000242,7.04e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000133;1.03e-09;59!CL:0000031;1.72e-08;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:3307,7.04e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0002346!8.52e-17!90;UBERON:0003075!1.01e-16!86;UBERON:0007284!1.01e-16!86;UBERON:0005743!7.79e-16!86;UBERON:0000073!1.30e-14!94;UBERON:0001016!1.30e-14!94;UBERON:0001017!3.77e-13!82;UBERON:0000924!4.89e-13!173;UBERON:0006601!4.89e-13!173;UBERON:0004121!8.60e-13!169;UBERON:0000483!7.27e-11!309;UBERON:0000119!7.91e-11!312;UBERON:0000033!8.24e-10!123;UBERON:0003056!9.75e-10!61;UBERON:0000153!1.05e-09!129;UBERON:0007811!1.05e-09!129;UBERON:0007625!2.40e-09!11;UBERON:0001049!4.24e-09!57;UBERON:0005068!4.24e-09!57;UBERON:0006241!4.24e-09!57;UBERON:0007135!4.24e-09!57;UBERON:0002616!1.86e-08!59;UBERON:0007023!2.29e-08!115;UBERON:0000955!8.09e-08!69;UBERON:0006238!8.09e-08!69;UBERON:0000019!1.45e-07!19;UBERON:0000047!1.45e-07!19;UBERON:0004088!1.45e-07!19;UBERON:0003072!1.45e-07!19;UBERON:0003071!1.45e-07!19;UBERON:0004128!1.45e-07!19;UBERON:0001456!1.61e-07!21;UBERON:0000481!1.66e-07!347;UBERON:0003076!4.08e-07!15;UBERON:0003057!4.08e-07!15;UBERON:0000970!5.53e-07!20;UBERON:0000468!8.61e-07!659 | |||
|ontology_enrichment_uberon_v019=UBERON:0000966;1.67e-14;5!UBERON:0005388;1.67e-14;5!UBERON:0001802;1.67e-14;5!UBERON:0007625;5.95e-12;11!UBERON:0000019;1.17e-10;19!UBERON:0000047;1.17e-10;19!UBERON:0004088;1.17e-10;19!UBERON:0010230;1.17e-10;19!UBERON:0000970;4.86e-10;20!UBERON:0002104;1.76e-09;21!UBERON:0001456;1.76e-09;21!UBERON:0001781;2.02e-09;3!UBERON:0001782;2.02e-09;3!UBERON:0000020;1.65e-08;23!UBERON:0001032;4.38e-08;24!UBERON:0004456;4.38e-08;24!UBERON:0010371;5.19e-07;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007625,3.43e-12,11;UBERON:0000966,4.51e-12,6;UBERON:0005388,4.51e-12,6;UBERON:0001802,4.51e-12,6;UBERON:0000019,3.84e-10,20;UBERON:0000047,3.84e-10,20;UBERON:0010312,3.84e-10,20;UBERON:0004088,3.84e-10,20;UBERON:0010230,3.84e-10,20;UBERON:0003072,3.84e-10,20;UBERON:0004128,3.84e-10,20;UBERON:0003071,3.84e-10,20;UBERON:0003075,5.62e-10,82;UBERON:0007284,5.62e-10,82;UBERON:0001782,1.28e-09,3;UBERON:0005424,1.28e-09,3;UBERON:0000970,1.41e-09,21;UBERON:0002104,1.41e-09,21;UBERON:0002346,2.75e-09,86;UBERON:0001456,4.60e-09,22;UBERON:0010371,1.15e-08,104;UBERON:0003056,2.54e-08,61;UBERON:0004121,3.43e-08,171;UBERON:0000924,3.43e-08,171;UBERON:0006601,3.43e-08,171;UBERON:0000020,3.62e-08,24;UBERON:0001032,3.62e-08,24;UBERON:0004456,3.62e-08,24;UBERON:0011216,3.80e-08,223;UBERON:0001048,1.73e-07,160;UBERON:0001781,2.65e-07,4;UBERON:0000483,3.57e-07,306;UBERON:0001017,3.64e-07,81;UBERON:0000119,5.20e-07,309;UBERON:0001016,6.72e-07,89 | |||
|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0.261185628199839,0,0,0,0,0.123766352960047,0,0.672325146451775,0,0,0,0.738726348460727,1.02000345622126,1.56727360739044,3.14859585844162,0.136874425072884,3.38965126905968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.55244006342983,0.886917589850256,1.49319135678314,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0.419499436209906,0,0.417989933073621,0,0,0.66944122552934,0,0,0,0,0,0.357198913136319,0,0,0,0,0.549605231791222,0,0,0,0,0.12663051166458,0,0.286836620748814,0,0.560677600142307,0,0,0,0,0.326923806226917,0.302714855289863,0,0.234321431833797,0,0,0,0.117434498643765,0,0,0,0,0.103325781175765,0,0.494533858557114,0,0,0.168336113954066,0,0,0.438977620880838,0,0.600952235626387,0.113432183160021,0,0,0,0,0,0,0.18611685633159,0.168776332241266,0,0,0,0.323292113637624,0,0,0,0,0,0,0.121973706129595,0.530119073285941,0.232387885739037,0.414644220061482,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,0,1.26755034821831,2.94848165003288,0.590789906681404,0,1.35287282397425,0.514703430895577,0,0,0,0,0,0,1.44331342025273,2.55046890945169,0.469634776943287,0,0,0,0.790204397959275,0.858486162094873,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0.144119953416961,0.12624243342638,5.39732101483437,6.11181480893244,8.20522130470329,6.84289784090821,2.46785982487976,4.80548892550268,12.5763630357454,0.112131084345361,0,0,0,0,0,0.26593811658487,0,0,0,0.266422179016099,0.142977993658148,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0,0,1.42636905040718,0,0,0,0,0,0,0,2.7950408664471,18.219579540067,6.18631050222156,12.2286873694075,6.37938751653163,0,0,0,0.36807447515742,0,0,0,0,0,0,0.902838299183157,0,2.0694614258501,0,0.368738337083406,0.0868836144680828,0,0.343143423810856,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.483437798366489,0,0,0.114814448164607,0.182091168006717,0.393373244878272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.79515087581472,3.93617574839647,2.27764876265012,0.618246069886334,0.183138929636687,0.247528499761764,0,0,0,0.096670718292122,0,0,0,0.214840489736547,0.145016693914229,0.255679882248303,0.801288320820636,0,0,0,0,0,0,0,0,0,0.869932992075073,0,0,0,0.632758849437452,0,0.767693373934002,0,0,0,0.539617372749944,0.54907405947211,0,0,0,0,0,0,1.05650146756755,0,0.282810863907425,1.13008116620243,0,0,0,0,1.31178950409327,0,0,0,0,0,0,0,0.211107635297664,0,0.379473173765715,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0.19924798825107,0,1.51159648712566,0,0,0,0,0,0,0.0986434056369336,0,0,0,0.371072392647405,11.9768278800717,1.04171104434093,0.0874599999961957,0.724999575434793,0,0,0,0.689486746482929,0,0.173624994933292,0,0.241192877250816,0,1.54810963903714,0.591095237907095,0,0,0,0.230850775511391,0,0.23056390438806,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.706765357169704,2.16388639742091,0,0.176915129006678,0,0,0,0,0.404406797884062,0,0,0,0,0,0,0,16.5279291280465,0.695052375913368,0.60129367765797,0.207376382794494,0,0,0,0,0,0,0,0,0,1.04836000945218,0,0.0967563312890851,0,0,0.193978032976839,0,0,0,0,0,0,0,0.426905989478705,0,0,0,0.514784993585894,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0.837847203816763,1.3749625440701,0.717873024576814,0.599037001496973,1.28767814440971,0.669514372325618,1.5452198671947,0,0,4.88455730304787,5.85152594506282,6.2685295784392,0,0,0,0.272406812223151,0.160753148465019,1.10031549277787,0.83088067605837,0,0,0,0,0,0.367182116944987,0,0,0,4.2881719582402,0.662091970365432,0,0,0,0,0,0,0.170388021785422,0,0.146552233678082,1.32506888912221,0.129282956361551,0,0,0,1.70859860108311,1.88645166119599,1.65695622138878,0,0,0,0,0,0,0,0,0.157054096250234,0,0.122026264901963,0,0.573409195690071,0.887432412294818,0.310482014706917,0,0,0.606596470166591,0.285465333544967,0,1.40500471742064,5.79684114443301,0,0.233713309847224,0,0.189403005275089,0,0,0,0.151230923763239,0.466311601748341,0,0,0,0.310525913752519,0,0,0,0,0,0.406870733204662,0.181848659202559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40683808434017,0,0.786329709279482,0,0.33946505990805,0,0.123935764259002,0,0,0,0,0.352675943690684,0,0.128458450192919,0,0,0.205116364240755,14.1160149884162,0,0.161475645631851,0,0,0,0,0,0,0,1.39241355481392,0.150420656698515,0,0,0,0,0,0,0,0,0.0634158101939068,11.4864709893826,0,0.496211178389294,0,0,1.60710550763486,1.3451348888753,0,0.227662191351298,0,0,0.171488009437418,0.135939465953663,0.131545547125698,0,0.111231401892069,0,0,0,0,0,0,3.35939757630285,1.10609528212909,1.62737995515375,0,2.40513409419076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198950775161368,0,1.1294608203896,0,0,0.308696632431779,0.218559560503957,0,0,0,0,0.297046400327086,0.8453114551668,0,0,0.0644578879735772,0,0,0,0,3.6516819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| |||
|short_description=p9@NHSL1 | |||
}} |
Revision as of 14:14, 22 January 2014
Short description: | p9@NHSL1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_NHSL1_5end |
Coexpression cluster: | C3731_temporal_Neural_parietal_Melanocyte_duodenum_occipital_Neurons |
Association with transcript: | -13bp_to_ENST00000427025_5end |
EntrezGene: | NHSL1 |
HGNC: | 21021 |
UniProt: | Q5SYE7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pigment cell | 2.19e-20 | 14 |
neurectodermal cell | 6.82e-20 | 59 |
neural cell | 1.58e-15 | 25 |
ectodermal cell | 2.59e-15 | 72 |
melanocyte | 9.95e-15 | 10 |
melanoblast | 9.95e-15 | 10 |
neuronal stem cell | 1.69e-13 | 8 |
visual pigment cell | 2.09e-12 | 4 |
migratory neural crest cell | 6.09e-12 | 41 |
columnar/cuboidal epithelial cell | 2.19e-11 | 27 |
neurecto-epithelial cell | 6.12e-11 | 20 |
light melanocyte | 2.25e-10 | 3 |
retinal pigment epithelial cell | 1.28e-09 | 3 |
ecto-epithelial cell | 1.41e-08 | 34 |
hepatocyte | 2.20e-08 | 12 |
neuron | 2.22e-08 | 6 |
neuroblast | 2.22e-08 | 6 |
electrically signaling cell | 2.22e-08 | 6 |
Merkel cell | 7.04e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
pigment epithelium of eye | 3.43e-12 | 11 |
retina | 4.51e-12 | 6 |
photoreceptor array | 4.51e-12 | 6 |
posterior segment of eyeball | 4.51e-12 | 6 |
camera-type eye | 3.84e-10 | 20 |
simple eye | 3.84e-10 | 20 |
immature eye | 3.84e-10 | 20 |
ocular region | 3.84e-10 | 20 |
eyeball of camera-type eye | 3.84e-10 | 20 |
optic cup | 3.84e-10 | 20 |
optic vesicle | 3.84e-10 | 20 |
eye primordium | 3.84e-10 | 20 |
neural plate | 5.62e-10 | 82 |
presumptive neural plate | 5.62e-10 | 82 |
pigmented layer of retina | 1.28e-09 | 3 |
presumptive retinal pigmented epithelium | 1.28e-09 | 3 |
eye | 1.41e-09 | 21 |
visual system | 1.41e-09 | 21 |
neurectoderm | 2.75e-09 | 86 |
face | 4.60e-09 | 22 |
ecto-epithelium | 1.15e-08 | 104 |
pre-chordal neural plate | 2.54e-08 | 61 |
ectoderm-derived structure | 3.43e-08 | 171 |
ectoderm | 3.43e-08 | 171 |
presumptive ectoderm | 3.43e-08 | 171 |
sense organ | 3.62e-08 | 24 |
sensory system | 3.62e-08 | 24 |
entire sense organ system | 3.62e-08 | 24 |
organ system subdivision | 3.80e-08 | 223 |
primordium | 1.73e-07 | 160 |
layer of retina | 2.65e-07 | 4 |
epithelium | 3.57e-07 | 306 |
central nervous system | 3.64e-07 | 81 |
cell layer | 5.20e-07 | 309 |
nervous system | 6.72e-07 | 89 |
Ontology term | p-value | n |
---|---|---|
teratoma | 7.04e-07 | 2 |