FFCP PHASE1:Mm9::chr3:80606667..80606692,-: Difference between revisions
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{{FFCP|EntrezGene=14800|HGNC=|MCL_coexpression_id=1|UniProt=G5E8H1,E9QKC0,P23819,Q4LG64,Q80VM6|association_with_transcript=20bp_to_ENSMUST00000075316,ENSMUST00000107745,ENSMUST00000107746,NM_001039195,NM_001083806,NM_013540,uc008poa.1,uc008pob.1,uc008poc.1,uc008pod.1,uc008poe.1_5end|description=CAGE_peak_5_at_Gria2_5end|id=chr3:80606667..80606692,-|ontology_enrichment_celltype=CL:0000540!2.16e-15!33;CL:0000047!2.16e-15!33;CL:0000031!2.16e-15!33;CL:0000404!2.16e-15!33;CL:0000117!1.64e-13!23;CL:0000337!1.64e-13!23;CL:0000221!6.78e-11!44;CL:0000133!6.78e-11!44;CL:0000393!6.88e-11!39;CL:0000211!6.88e-11!39;CL:0002319!9.63e-11!43;CL:0000055!2.04e-07!50|ontology_enrichment_celltype_v019_2=CL:0000117,6.03e-18,23;CL:0000337,6.03e-18,23;CL:0000540,1.38e-15,33;CL:0000047,1.38e-15,33;CL:0000031,1.38e-15,33;CL:0000404,1.38e-15,33;CL:0000393,8.33e-12,39;CL:0000211,8.33e-12,39;CL:0002319,6.51e-10,43;CL:0000221,1.69e-09,44;CL:0000133,1.69e-09,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.89e-29!73;UBERON:0005743!1.89e-29!73;UBERON:0000073!1.73e-28!75;UBERON:0001016!1.73e-28!75;UBERON:0002346!4.18e-27!71;UBERON:0003075!4.18e-27!71;UBERON:0007284!4.18e-27!71;UBERON:0001049!3.75e-25!52;UBERON:0005068!3.75e-25!52;UBERON:0006241!3.75e-25!52;UBERON:0007135!3.75e-25!52;UBERON:0004121!5.61e-25!102;UBERON:0000924!5.61e-25!102;UBERON:0006601!5.61e-25!102;UBERON:0000955!4.39e-24!50;UBERON:0006238!4.39e-24!50;UBERON:0000033!2.70e-23!63;UBERON:0002616!3.15e-23!49;UBERON:0002020!5.29e-21!34;UBERON:0003056!1.00e-19!49;UBERON:0003080!2.95e-19!40;UBERON:0002780!1.55e-18!39;UBERON:0001890!1.55e-18!39;UBERON:0006240!1.55e-18!39;UBERON:0002791!9.55e-18!29;UBERON:0003528!9.55e-18!29;UBERON:0001893!9.55e-18!29;UBERON:0000956!8.22e-13!21;UBERON:0001869!8.22e-13!21;UBERON:0000203!8.22e-13!21;UBERON:0007811!1.64e-12!86;UBERON:0000153!1.37e-11!94;UBERON:0002619!2.11e-10!17;UBERON:0002021!4.41e-09!10;UBERON:0000411!4.41e-09!10;UBERON:0001950!4.41e-09!10|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.71e-33,54;UBERON:0001017,1.19e-32,73;UBERON:0001049,1.90e-31,52;UBERON:0005068,1.90e-31,52;UBERON:0006241,1.90e-31,52;UBERON:0007135,1.90e-31,52;UBERON:0001016,3.00e-31,75;UBERON:0002346,4.17e-31,64;UBERON:0003075,4.17e-31,64;UBERON:0007284,4.17e-31,64;UBERON:0002020,1.11e-27,34;UBERON:0000955,4.03e-27,47;UBERON:0006238,4.03e-27,47;UBERON:0004121,1.17e-26,95;UBERON:0000924,1.17e-26,95;UBERON:0006601,1.17e-26,95;UBERON:0002616,5.34e-26,46;UBERON:0010371,4.91e-25,73;UBERON:0003056,1.38e-24,49;UBERON:0003080,5.95e-24,40;UBERON:0003528,3.23e-23,29;UBERON:0002791,3.23e-23,29;UBERON:0001893,3.23e-23,29;UBERON:0002780,5.57e-23,39;UBERON:0001890,5.57e-23,39;UBERON:0006240,5.57e-23,39;UBERON:0010314,9.35e-18,92;UBERON:0000956,1.86e-16,21;UBERON:0001869,1.86e-16,21;UBERON:0000203,1.86e-16,21;UBERON:0002619,3.66e-13,17;UBERON:0002021,7.11e-12,10;UBERON:0000411,7.11e-12,10;UBERON:0001950,7.11e-12,10;UBERON:0002420,6.98e-08,8;UBERON:0007245,6.98e-08,8;UBERON:0010009,6.98e-08,8;UBERON:0010011,6.98e-08,8;UBERON:0000454,6.98e-08,8;UBERON:0003076,8.36e-08,12;UBERON:0003057,8.36e-08,12;UBERON:0000025,7.54e-07,114|phase1_expression=0.320297694209588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.52781385981954,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0,0.194429899074283,0.139986421625363,0,0,0,0,0,0,0,4.24864567805155,1.5869729378161,1.26766280701236,0,0,0,0.988866362566974,0,0,0,7.05089363697648,3.78016627328734,4.20649922702764,4.28476476605705,4.63823935998388,3.79721477566358,3.45043695665651,2.75765635983006,7.70811166995721,11.6195477657521,11.5204899942183,3.16527090552465,4.02545631850602,6.25096044668112,5.02529398202486,9.56696437053856,11.1542720877071,14.142172102736,13.3829379951157,8.57437450796383,0,0.0755715601067855,0,0,0,0,0,0,0.421333260395256,0,0,0,0.422530259330042,0,0,0,0,0,0,0.79928715803342,0,0.742210695324124,1.21439728736295,0,0.691846491768175,1.05505848386836,0.940709657085638,0.502666365318702,0,0,0,0,0.220841518460394,0,0,14.0534782565543,27.2280718857492,0,0,0,0,14.0803201040533,18.3000241127451,18.7224984648168,38.9366477230699,46.0287823194595,11.0127663616567,28.5544622999253,0,0,2.0217820674694,1.05220927943237,0,0,0.180062129805349,1.20563854268572,2.38127747029647,2.69038812598185,2.90475346135159,4.65666067330228,0,0.189106080167819,0.351902248327898,0.43839146485515,0.834141747676794,0,0,0.199034266818493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,49.628427861134,19.3460671273055,0,0,0,0.232236671860439,0.38660238396628,0.201683524623343,0.22237804384487,0,0,0.164698954724011,0.251335208800269,0.198956472041151,0,0,0.216138049874694,0.199141273254367,0,0.114248512609729,0,0,0,0.280543279561274,0,0.147610147979602,0.156998727841375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189491411770485,0,0,0,0,0,0,0,0.221464689648775,0,0,0,0,0,0,0,0,7.22477654945064,9.25972324078405,0,0,0.631016438832513,0.780877488593277,1.50796378412959,0.238968797952552,1.11399337041197,0.849229592366497,1.21443210502468,2.63030272120181,5.13874111330481,30.2042037436499,0,0,0.488660878060728,0,0,0.242780636154981,0,0,0,0.307435147943927,0.258428293168221,0.727067458955011,0.356497378384721,0.948110273807448,0,0,3.06395645178409,0.36012218806262,0,0,1.95074257006501,1.07021290561242,2.63278432963394,0.304464949114599,0,0,0,0,0,0.120625849856312,0,0,0,6.11903496634682,0,0.619160603889667,0,0,0.136694227721025,0,0.169978429993855,0.139951452323658,0.138199973804424,0,0.158167996790568,0.406638934253697,0.324016022465404,0,0.218362563746178,0.134864346384821,0,0.26175594198403,0.259229946583586,0,0,0.149516546043979,0,0,0,0,0,0,0,0,0,0.316011120628178,0,0,0,0,0,0,0,0,0.15241361331,0,0.0974578807397524,0.0962118416403295,0,0,0,0,0,0,0,0,0,0,26.5433366030021,22.0956113523445,20.0513429703789,19.247556422493,28.0883833105963,29.4603619981983,37.8012600129811,27.4695933966774,24.9228324941313,26.9235362110946,0.415149390336707,1.99512436700516,1.70733605754134,2.18796045361465,2.09613162627982,1.65459157605013,2.66696073361938,2.06035057238894,1.60459604795908,2.27427490587418,2.78827229879264,3.2066478035633,2.90288673156635,4.86591158277006,4.19278923375977,5.23923060411381,4.51948871184936,5.20854895252004,2.47251540481984,1.76638704161277,2.74295401908332,2.66213709239006,2.62279808942053,1.0174249164263,2.72917203204459,3.80765735512544,2.74391959309159,2.10455769150274,3.66671107383827,1.12228454331548,2.72860541685601,3.74317033027141,0.818462086339379,3.71848418846318,2.70069255373598,2.24829520144151,3.27504251823572,1.71896843238639,0.382576664137687,0.220591419119515,0.231867835620421|short_description=p5@Gria2}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:14800 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:G5E8H1,uniprot:E9QKC0,uniprot:P23819,uniprot:Q4LG64,uniprot:Q80VM6 | |||
|association_with_transcript=20bp_to_ENSMUST00000075316,ENSMUST00000107745,ENSMUST00000107746,NM_001039195,NM_001083806,NM_013540,uc008poa.1,uc008pob.1,uc008poc.1,uc008pod.1,uc008poe.1_5end | |||
|cluster_id=chr3:80606667..80606692,- | |||
|description=CAGE_peak_5_at_Gria2_5end | |||
|id=chr3:80606667..80606692,- | |||
|ontology_enrichment_celltype=CL:0000540!2.16e-15!33;CL:0000047!2.16e-15!33;CL:0000031!2.16e-15!33;CL:0000404!2.16e-15!33;CL:0000117!1.64e-13!23;CL:0000337!1.64e-13!23;CL:0000221!6.78e-11!44;CL:0000133!6.78e-11!44;CL:0000393!6.88e-11!39;CL:0000211!6.88e-11!39;CL:0002319!9.63e-11!43;CL:0000055!2.04e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,6.03e-18,23;CL:0000337,6.03e-18,23;CL:0000540,1.38e-15,33;CL:0000047,1.38e-15,33;CL:0000031,1.38e-15,33;CL:0000404,1.38e-15,33;CL:0000393,8.33e-12,39;CL:0000211,8.33e-12,39;CL:0002319,6.51e-10,43;CL:0000221,1.69e-09,44;CL:0000133,1.69e-09,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.89e-29!73;UBERON:0005743!1.89e-29!73;UBERON:0000073!1.73e-28!75;UBERON:0001016!1.73e-28!75;UBERON:0002346!4.18e-27!71;UBERON:0003075!4.18e-27!71;UBERON:0007284!4.18e-27!71;UBERON:0001049!3.75e-25!52;UBERON:0005068!3.75e-25!52;UBERON:0006241!3.75e-25!52;UBERON:0007135!3.75e-25!52;UBERON:0004121!5.61e-25!102;UBERON:0000924!5.61e-25!102;UBERON:0006601!5.61e-25!102;UBERON:0000955!4.39e-24!50;UBERON:0006238!4.39e-24!50;UBERON:0000033!2.70e-23!63;UBERON:0002616!3.15e-23!49;UBERON:0002020!5.29e-21!34;UBERON:0003056!1.00e-19!49;UBERON:0003080!2.95e-19!40;UBERON:0002780!1.55e-18!39;UBERON:0001890!1.55e-18!39;UBERON:0006240!1.55e-18!39;UBERON:0002791!9.55e-18!29;UBERON:0003528!9.55e-18!29;UBERON:0001893!9.55e-18!29;UBERON:0000956!8.22e-13!21;UBERON:0001869!8.22e-13!21;UBERON:0000203!8.22e-13!21;UBERON:0007811!1.64e-12!86;UBERON:0000153!1.37e-11!94;UBERON:0002619!2.11e-10!17;UBERON:0002021!4.41e-09!10;UBERON:0000411!4.41e-09!10;UBERON:0001950!4.41e-09!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.71e-33,54;UBERON:0001017,1.19e-32,73;UBERON:0001049,1.90e-31,52;UBERON:0005068,1.90e-31,52;UBERON:0006241,1.90e-31,52;UBERON:0007135,1.90e-31,52;UBERON:0001016,3.00e-31,75;UBERON:0002346,4.17e-31,64;UBERON:0003075,4.17e-31,64;UBERON:0007284,4.17e-31,64;UBERON:0002020,1.11e-27,34;UBERON:0000955,4.03e-27,47;UBERON:0006238,4.03e-27,47;UBERON:0004121,1.17e-26,95;UBERON:0000924,1.17e-26,95;UBERON:0006601,1.17e-26,95;UBERON:0002616,5.34e-26,46;UBERON:0010371,4.91e-25,73;UBERON:0003056,1.38e-24,49;UBERON:0003080,5.95e-24,40;UBERON:0003528,3.23e-23,29;UBERON:0002791,3.23e-23,29;UBERON:0001893,3.23e-23,29;UBERON:0002780,5.57e-23,39;UBERON:0001890,5.57e-23,39;UBERON:0006240,5.57e-23,39;UBERON:0010314,9.35e-18,92;UBERON:0000956,1.86e-16,21;UBERON:0001869,1.86e-16,21;UBERON:0000203,1.86e-16,21;UBERON:0002619,3.66e-13,17;UBERON:0002021,7.11e-12,10;UBERON:0000411,7.11e-12,10;UBERON:0001950,7.11e-12,10;UBERON:0002420,6.98e-08,8;UBERON:0007245,6.98e-08,8;UBERON:0010009,6.98e-08,8;UBERON:0010011,6.98e-08,8;UBERON:0000454,6.98e-08,8;UBERON:0003076,8.36e-08,12;UBERON:0003057,8.36e-08,12;UBERON:0000025,7.54e-07,114 | |||
|phase1_expression=0.320297694209588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.52781385981954,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0,0.194429899074283,0.139986421625363,0,0,0,0,0,0,0,4.24864567805155,1.5869729378161,1.26766280701236,0,0,0,0.988866362566974,0,0,0,7.05089363697648,3.78016627328734,4.20649922702764,4.28476476605705,4.63823935998388,3.79721477566358,3.45043695665651,2.75765635983006,7.70811166995721,11.6195477657521,11.5204899942183,3.16527090552465,4.02545631850602,6.25096044668112,5.02529398202486,9.56696437053856,11.1542720877071,14.142172102736,13.3829379951157,8.57437450796383,0,0.0755715601067855,0,0,0,0,0,0,0.421333260395256,0,0,0,0.422530259330042,0,0,0,0,0,0,0.79928715803342,0,0.742210695324124,1.21439728736295,0,0.691846491768175,1.05505848386836,0.940709657085638,0.502666365318702,0,0,0,0,0.220841518460394,0,0,14.0534782565543,27.2280718857492,0,0,0,0,14.0803201040533,18.3000241127451,18.7224984648168,38.9366477230699,46.0287823194595,11.0127663616567,28.5544622999253,0,0,2.0217820674694,1.05220927943237,0,0,0.180062129805349,1.20563854268572,2.38127747029647,2.69038812598185,2.90475346135159,4.65666067330228,0,0.189106080167819,0.351902248327898,0.43839146485515,0.834141747676794,0,0,0.199034266818493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,49.628427861134,19.3460671273055,0,0,0,0.232236671860439,0.38660238396628,0.201683524623343,0.22237804384487,0,0,0.164698954724011,0.251335208800269,0.198956472041151,0,0,0.216138049874694,0.199141273254367,0,0.114248512609729,0,0,0,0.280543279561274,0,0.147610147979602,0.156998727841375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189491411770485,0,0,0,0,0,0,0,0.221464689648775,0,0,0,0,0,0,0,0,7.22477654945064,9.25972324078405,0,0,0.631016438832513,0.780877488593277,1.50796378412959,0.238968797952552,1.11399337041197,0.849229592366497,1.21443210502468,2.63030272120181,5.13874111330481,30.2042037436499,0,0,0.488660878060728,0,0,0.242780636154981,0,0,0,0.307435147943927,0.258428293168221,0.727067458955011,0.356497378384721,0.948110273807448,0,0,3.06395645178409,0.36012218806262,0,0,1.95074257006501,1.07021290561242,2.63278432963394,0.304464949114599,0,0,0,0,0,0.120625849856312,0,0,0,6.11903496634682,0,0.619160603889667,0,0,0.136694227721025,0,0.169978429993855,0.139951452323658,0.138199973804424,0,0.158167996790568,0.406638934253697,0.324016022465404,0,0.218362563746178,0.134864346384821,0,0.26175594198403,0.259229946583586,0,0,0.149516546043979,0,0,0,0,0,0,0,0,0,0.316011120628178,0,0,0,0,0,0,0,0,0.15241361331,0,0.0974578807397524,0.0962118416403295,0,0,0,0,0,0,0,0,0,0,26.5433366030021,22.0956113523445,20.0513429703789,19.247556422493,28.0883833105963,29.4603619981983,37.8012600129811,27.4695933966774,24.9228324941313,26.9235362110946,0.415149390336707,1.99512436700516,1.70733605754134,2.18796045361465,2.09613162627982,1.65459157605013,2.66696073361938,2.06035057238894,1.60459604795908,2.27427490587418,2.78827229879264,3.2066478035633,2.90288673156635,4.86591158277006,4.19278923375977,5.23923060411381,4.51948871184936,5.20854895252004,2.47251540481984,1.76638704161277,2.74295401908332,2.66213709239006,2.62279808942053,1.0174249164263,2.72917203204459,3.80765735512544,2.74391959309159,2.10455769150274,3.66671107383827,1.12228454331548,2.72860541685601,3.74317033027141,0.818462086339379,3.71848418846318,2.70069255373598,2.24829520144151,3.27504251823572,1.71896843238639,0.382576664137687,0.220591419119515,0.231867835620421 | |||
|short_description=p5@Gria2 | |||
}} |
Revision as of 01:17, 4 August 2015
Short description: | p5@Gria2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Gria2_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 20bp_to_ENSMUST00000075316, ENSMUST00000107745, ENSMUST00000107746, NM_001039195, NM_001083806, NM_013540, uc008poa.1, uc008pob.1, uc008poc.1, uc008pod.1, uc008poe.1_5end |
EntrezGene: | 14800 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 6.03e-18 | 23 |
neuroblast (sensu Vertebrata) | 6.03e-18 | 23 |
neuron | 1.38e-15 | 33 |
neuronal stem cell | 1.38e-15 | 33 |
neuroblast | 1.38e-15 | 33 |
electrically signaling cell | 1.38e-15 | 33 |
electrically responsive cell | 8.33e-12 | 39 |
electrically active cell | 8.33e-12 | 39 |
neural cell | 6.51e-10 | 43 |
ectodermal cell | 1.69e-09 | 44 |
neurectodermal cell | 1.69e-09 | 44 |