FFCP PHASE1:Mm9::chr8:81334120..81334134,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=78651|HGNC=|MCL_coexpression_id=287|UniProt=|association_with_transcript=-11bp_to_ENSMUST00000126174_5end|description=CAGE_peak_6_at_Lsm6_5end|id=chr8:81334120..81334134,-|ontology_enrichment_celltype=CL:0000117!1.28e-25!23;CL:0000337!1.28e-25!23;CL:0000540!1.54e-16!33;CL:0000047!1.54e-16!33;CL:0000031!1.54e-16!33;CL:0000404!1.54e-16!33;CL:0000221!1.37e-14!44;CL:0000133!1.37e-14!44;CL:0000393!2.45e-13!39;CL:0000211!2.45e-13!39;CL:0002319!2.45e-13!43;CL:0000055!7.57e-11!50;CL:0002614!2.39e-08!3;CL:0002610!4.31e-08!3;CL:0002612!1.42e-07!3;CL:0002321!1.84e-07!70;CL:0000220!1.84e-07!70;CL:0002613!5.98e-07!3|ontology_enrichment_celltype_v019_2=CL:0000117,1.83e-31,23;CL:0000337,1.83e-31,23;CL:0000540,1.87e-21,33;CL:0000047,1.87e-21,33;CL:0000031,1.87e-21,33;CL:0000404,1.87e-21,33;CL:0000393,6.65e-18,39;CL:0000211,6.65e-18,39;CL:0002614,5.10e-17,3;CL:0002610,1.94e-16,3;CL:0002319,4.38e-16,43;CL:0000221,1.11e-15,44;CL:0000133,1.11e-15,44;CL:0002611,4.35e-12,2;CL:0002321,3.23e-09,70;CL:0002612,5.88e-08,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.15e-21!73;UBERON:0005743!1.15e-21!73;UBERON:0001049!1.52e-21!52;UBERON:0005068!1.52e-21!52;UBERON:0006241!1.52e-21!52;UBERON:0007135!1.52e-21!52;UBERON:0000073!6.81e-21!75;UBERON:0001016!6.81e-21!75;UBERON:0003076!4.14e-18!12;UBERON:0003057!4.14e-18!12;UBERON:0002616!3.37e-17!49;UBERON:0002420!4.43e-17!8;UBERON:0007245!4.43e-17!8;UBERON:0010009!4.43e-17!8;UBERON:0010011!4.43e-17!8;UBERON:0000454!4.43e-17!8;UBERON:0000955!9.57e-17!50;UBERON:0006238!9.57e-17!50;UBERON:0002020!4.63e-15!34;UBERON:0004121!1.15e-14!102;UBERON:0000924!1.15e-14!102;UBERON:0006601!1.15e-14!102;UBERON:0002298!2.07e-14!6;UBERON:0002346!3.98e-14!71;UBERON:0003075!3.98e-14!71;UBERON:0007284!3.98e-14!71;UBERON:0002240!4.98e-14!6;UBERON:0005174!4.98e-14!6;UBERON:0001137!4.98e-14!6;UBERON:0000033!1.52e-13!63;UBERON:0001948!3.95e-12!5;UBERON:0002315!3.95e-12!5;UBERON:0002950!1.82e-10!4;UBERON:0001891!1.82e-10!4;UBERON:0009616!1.82e-10!4;UBERON:0000369!2.21e-10!5;UBERON:0002435!2.21e-10!5;UBERON:0000204!2.21e-10!5;UBERON:0010082!2.21e-10!5;UBERON:0003080!5.78e-09!40;UBERON:0007811!1.90e-08!86;UBERON:0002038!2.39e-08!3;UBERON:0002308!2.39e-08!3;UBERON:0009663!2.39e-08!3;UBERON:0009661!2.39e-08!3;UBERON:0006331!2.39e-08!3;UBERON:0000125!2.39e-08!3;UBERON:0002791!3.39e-08!29;UBERON:0003528!3.39e-08!29;UBERON:0001893!3.39e-08!29;UBERON:0004684!4.31e-08!3;UBERON:0002275!4.31e-08!3;UBERON:0002780!7.40e-08!39;UBERON:0001890!7.40e-08!39;UBERON:0006240!7.40e-08!39;UBERON:0002257!1.42e-07!3;UBERON:0000153!2.82e-07!94|ontology_enrichment_uberon_v019_2=UBERON:0000073,6.07e-23,54;UBERON:0002950,7.56e-22,4;UBERON:0001891,7.56e-22,4;UBERON:0009616,7.56e-22,4;UBERON:0010286,7.56e-22,4;UBERON:0003076,8.70e-21,12;UBERON:0003057,8.70e-21,12;UBERON:0001017,1.01e-18,73;UBERON:0001016,3.61e-18,75;UBERON:0001948,1.41e-17,5;UBERON:0002315,1.41e-17,5;UBERON:0002038,5.10e-17,3;UBERON:0009663,5.10e-17,3;UBERON:0009661,5.10e-17,3;UBERON:0000125,5.10e-17,3;UBERON:0002308,5.10e-17,3;UBERON:0004684,1.94e-16,3;UBERON:0002275,1.94e-16,3;UBERON:0001049,2.59e-15,52;UBERON:0005068,2.59e-15,52;UBERON:0006241,2.59e-15,52;UBERON:0007135,2.59e-15,52;UBERON:0002240,1.09e-14,6;UBERON:0005174,1.09e-14,6;UBERON:0001137,1.09e-14,6;UBERON:0004121,6.62e-14,95;UBERON:0000924,6.62e-14,95;UBERON:0006601,6.62e-14,95;UBERON:0002346,4.25e-12,64;UBERON:0003075,4.25e-12,64;UBERON:0007284,4.25e-12,64;UBERON:0002256,4.35e-12,2;UBERON:0002420,7.32e-11,8;UBERON:0007245,7.32e-11,8;UBERON:0010009,7.32e-11,8;UBERON:0010011,7.32e-11,8;UBERON:0000454,7.32e-11,8;UBERON:0010371,2.25e-10,73;UBERON:0002020,3.52e-09,34;UBERON:0004733,3.89e-08,6;UBERON:0004732,3.89e-08,6;UBERON:0002028,3.89e-08,6;UBERON:0007277,3.89e-08,6;UBERON:0002616,5.01e-08,46;UBERON:0002257,5.88e-08,3;UBERON:0010314,7.78e-08,92;UBERON:0000955,7.86e-08,47;UBERON:0006238,7.86e-08,47|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05798195854407,0,0,0,0,0,0,0,0.768436610643109,0.103689612308478,0.135005938331691,0,4.57041575046086,8.1721360152097,0,0,0,1.10115880999389,3.06449611404451,6.14426133024974,0.131886287730194,0.274462930807229,1.04182674111352,5.30447698102624,7.31591393041184,2.90316670775939,2.06240009831567,3.55929201997757,0.186399445825301,0,0,0,0,0,0,0,0,0,0,0,0,0.422530259330042,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.04946557908083,1.25668024088073,0,0,0,0,2.09706895166752,0.457500602818626,0.125654352112864,0,0,2.49345653471472,0.486723789203273,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210289948564127,0.102904612379284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12385412991454,0.586058432961016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.556275906031529,0,0,0,0.188368457004691,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252697211763798,0,0.188626341386076,0,0,0.114870937911227,0,0,0,0.412085900803307,0,0,0,0,0,0,0.0846146078916765,0,0,0.135804113845862,0,0.118635018124174,0,0,0.154936841185966,0.192906610981141,0,0,0,0,0,0|short_description=p6@Lsm6}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:78651 | |||
|HGNC= | |||
|MCL_coexpression_id=287 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=-11bp_to_ENSMUST00000126174_5end | |||
|cluster_id=chr8:81334120..81334134,- | |||
|description=CAGE_peak_6_at_Lsm6_5end | |||
|id=chr8:81334120..81334134,- | |||
|ontology_enrichment_celltype=CL:0000117!1.28e-25!23;CL:0000337!1.28e-25!23;CL:0000540!1.54e-16!33;CL:0000047!1.54e-16!33;CL:0000031!1.54e-16!33;CL:0000404!1.54e-16!33;CL:0000221!1.37e-14!44;CL:0000133!1.37e-14!44;CL:0000393!2.45e-13!39;CL:0000211!2.45e-13!39;CL:0002319!2.45e-13!43;CL:0000055!7.57e-11!50;CL:0002614!2.39e-08!3;CL:0002610!4.31e-08!3;CL:0002612!1.42e-07!3;CL:0002321!1.84e-07!70;CL:0000220!1.84e-07!70;CL:0002613!5.98e-07!3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.83e-31,23;CL:0000337,1.83e-31,23;CL:0000540,1.87e-21,33;CL:0000047,1.87e-21,33;CL:0000031,1.87e-21,33;CL:0000404,1.87e-21,33;CL:0000393,6.65e-18,39;CL:0000211,6.65e-18,39;CL:0002614,5.10e-17,3;CL:0002610,1.94e-16,3;CL:0002319,4.38e-16,43;CL:0000221,1.11e-15,44;CL:0000133,1.11e-15,44;CL:0002611,4.35e-12,2;CL:0002321,3.23e-09,70;CL:0002612,5.88e-08,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.15e-21!73;UBERON:0005743!1.15e-21!73;UBERON:0001049!1.52e-21!52;UBERON:0005068!1.52e-21!52;UBERON:0006241!1.52e-21!52;UBERON:0007135!1.52e-21!52;UBERON:0000073!6.81e-21!75;UBERON:0001016!6.81e-21!75;UBERON:0003076!4.14e-18!12;UBERON:0003057!4.14e-18!12;UBERON:0002616!3.37e-17!49;UBERON:0002420!4.43e-17!8;UBERON:0007245!4.43e-17!8;UBERON:0010009!4.43e-17!8;UBERON:0010011!4.43e-17!8;UBERON:0000454!4.43e-17!8;UBERON:0000955!9.57e-17!50;UBERON:0006238!9.57e-17!50;UBERON:0002020!4.63e-15!34;UBERON:0004121!1.15e-14!102;UBERON:0000924!1.15e-14!102;UBERON:0006601!1.15e-14!102;UBERON:0002298!2.07e-14!6;UBERON:0002346!3.98e-14!71;UBERON:0003075!3.98e-14!71;UBERON:0007284!3.98e-14!71;UBERON:0002240!4.98e-14!6;UBERON:0005174!4.98e-14!6;UBERON:0001137!4.98e-14!6;UBERON:0000033!1.52e-13!63;UBERON:0001948!3.95e-12!5;UBERON:0002315!3.95e-12!5;UBERON:0002950!1.82e-10!4;UBERON:0001891!1.82e-10!4;UBERON:0009616!1.82e-10!4;UBERON:0000369!2.21e-10!5;UBERON:0002435!2.21e-10!5;UBERON:0000204!2.21e-10!5;UBERON:0010082!2.21e-10!5;UBERON:0003080!5.78e-09!40;UBERON:0007811!1.90e-08!86;UBERON:0002038!2.39e-08!3;UBERON:0002308!2.39e-08!3;UBERON:0009663!2.39e-08!3;UBERON:0009661!2.39e-08!3;UBERON:0006331!2.39e-08!3;UBERON:0000125!2.39e-08!3;UBERON:0002791!3.39e-08!29;UBERON:0003528!3.39e-08!29;UBERON:0001893!3.39e-08!29;UBERON:0004684!4.31e-08!3;UBERON:0002275!4.31e-08!3;UBERON:0002780!7.40e-08!39;UBERON:0001890!7.40e-08!39;UBERON:0006240!7.40e-08!39;UBERON:0002257!1.42e-07!3;UBERON:0000153!2.82e-07!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,6.07e-23,54;UBERON:0002950,7.56e-22,4;UBERON:0001891,7.56e-22,4;UBERON:0009616,7.56e-22,4;UBERON:0010286,7.56e-22,4;UBERON:0003076,8.70e-21,12;UBERON:0003057,8.70e-21,12;UBERON:0001017,1.01e-18,73;UBERON:0001016,3.61e-18,75;UBERON:0001948,1.41e-17,5;UBERON:0002315,1.41e-17,5;UBERON:0002038,5.10e-17,3;UBERON:0009663,5.10e-17,3;UBERON:0009661,5.10e-17,3;UBERON:0000125,5.10e-17,3;UBERON:0002308,5.10e-17,3;UBERON:0004684,1.94e-16,3;UBERON:0002275,1.94e-16,3;UBERON:0001049,2.59e-15,52;UBERON:0005068,2.59e-15,52;UBERON:0006241,2.59e-15,52;UBERON:0007135,2.59e-15,52;UBERON:0002240,1.09e-14,6;UBERON:0005174,1.09e-14,6;UBERON:0001137,1.09e-14,6;UBERON:0004121,6.62e-14,95;UBERON:0000924,6.62e-14,95;UBERON:0006601,6.62e-14,95;UBERON:0002346,4.25e-12,64;UBERON:0003075,4.25e-12,64;UBERON:0007284,4.25e-12,64;UBERON:0002256,4.35e-12,2;UBERON:0002420,7.32e-11,8;UBERON:0007245,7.32e-11,8;UBERON:0010009,7.32e-11,8;UBERON:0010011,7.32e-11,8;UBERON:0000454,7.32e-11,8;UBERON:0010371,2.25e-10,73;UBERON:0002020,3.52e-09,34;UBERON:0004733,3.89e-08,6;UBERON:0004732,3.89e-08,6;UBERON:0002028,3.89e-08,6;UBERON:0007277,3.89e-08,6;UBERON:0002616,5.01e-08,46;UBERON:0002257,5.88e-08,3;UBERON:0010314,7.78e-08,92;UBERON:0000955,7.86e-08,47;UBERON:0006238,7.86e-08,47 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05798195854407,0,0,0,0,0,0,0,0.768436610643109,0.103689612308478,0.135005938331691,0,4.57041575046086,8.1721360152097,0,0,0,1.10115880999389,3.06449611404451,6.14426133024974,0.131886287730194,0.274462930807229,1.04182674111352,5.30447698102624,7.31591393041184,2.90316670775939,2.06240009831567,3.55929201997757,0.186399445825301,0,0,0,0,0,0,0,0,0,0,0,0,0.422530259330042,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.04946557908083,1.25668024088073,0,0,0,0,2.09706895166752,0.457500602818626,0.125654352112864,0,0,2.49345653471472,0.486723789203273,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210289948564127,0.102904612379284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12385412991454,0.586058432961016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.556275906031529,0,0,0,0.188368457004691,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252697211763798,0,0.188626341386076,0,0,0.114870937911227,0,0,0,0.412085900803307,0,0,0,0,0,0,0.0846146078916765,0,0,0.135804113845862,0,0.118635018124174,0,0,0.154936841185966,0.192906610981141,0,0,0,0,0,0 | |||
|short_description=p6@Lsm6 | |||
}} |
Revision as of 03:37, 4 August 2015
Short description: | p6@Lsm6 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_Lsm6_5end |
Coexpression cluster: | MCL_coexpression_mm9:287 |
Association with transcript: | -11bp_to_ENSMUST00000126174_5end |
EntrezGene: | 78651 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.83e-31 | 23 |
neuroblast (sensu Vertebrata) | 1.83e-31 | 23 |
neuron | 1.87e-21 | 33 |
neuronal stem cell | 1.87e-21 | 33 |
neuroblast | 1.87e-21 | 33 |
electrically signaling cell | 1.87e-21 | 33 |
electrically responsive cell | 6.65e-18 | 39 |
electrically active cell | 6.65e-18 | 39 |
neuron of the substantia nigra | 5.10e-17 | 3 |
raphe nuclei neuron | 1.94e-16 | 3 |
neural cell | 4.38e-16 | 43 |
ectodermal cell | 1.11e-15 | 44 |
neurectodermal cell | 1.11e-15 | 44 |
neuron of the dorsal spinal cord | 4.35e-12 | 2 |
embryonic cell | 3.23e-09 | 70 |
neuron of the ventral spinal cord | 5.88e-08 | 3 |