FFCP PHASE1:Mm9::chr9:40820987..40820991,-: Difference between revisions
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{{FFCP|EntrezGene=NA|HGNC=|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr9:40820987..40820991,-|id=chr9:40820987..40820991,-|ontology_enrichment_celltype=CL:0000221!6.28e-16!44;CL:0000133!6.28e-16!44;CL:0000393!1.36e-15!39;CL:0000211!1.36e-15!39;CL:0000055!2.49e-15!50;CL:0002319!2.84e-15!43;CL:0000540!4.57e-15!33;CL:0000047!4.57e-15!33;CL:0000031!4.57e-15!33;CL:0000404!4.57e-15!33;CL:0000117!7.58e-15!23;CL:0000337!7.58e-15!23;CL:0002321!2.31e-10!70;CL:0000220!2.31e-10!70;CL:0000723!1.37e-07!91;CL:0000048!1.37e-07!91;CL:0002371!4.38e-07!118;CL:0000034!4.98e-07!97|ontology_enrichment_celltype_v019_2=CL:0000117,1.28e-29,23;CL:0000337,1.28e-29,23;CL:0000221,1.52e-24,44;CL:0000133,1.52e-24,44;CL:0002319,7.92e-23,43;CL:0000540,3.67e-22,33;CL:0000047,3.67e-22,33;CL:0000031,3.67e-22,33;CL:0000404,3.67e-22,33;CL:0000393,1.84e-20,39;CL:0000211,1.84e-20,39;CL:0002321,1.32e-16,70;CL:0000034,1.60e-15,97;CL:0000723,1.92e-15,91;CL:0000048,1.92e-15,91;CL:0002612,4.80e-09,3;CL:0002614,6.51e-09,3;CL:0002613,6.91e-09,3;CL:0000217,7.62e-07,2;CL:0000328,7.62e-07,2;CL:0002573,7.62e-07,2;CL:0002376,7.62e-07,2;CL:0000218,7.62e-07,2;CL:0000692,7.62e-07,2;CL:0002377,7.62e-07,2;CL:0002375,7.62e-07,2|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!2.05e-13!75;UBERON:0001016!2.05e-13!75;UBERON:0001017!3.72e-12!73;UBERON:0005743!3.72e-12!73;UBERON:0004121!1.47e-09!102;UBERON:0000924!1.47e-09!102;UBERON:0006601!1.47e-09!102;UBERON:0001049!1.18e-08!52;UBERON:0005068!1.18e-08!52;UBERON:0006241!1.18e-08!52;UBERON:0007135!1.18e-08!52;UBERON:0002020!1.21e-08!34|ontology_enrichment_uberon_v019_2=UBERON:0001948,4.18e-14,5;UBERON:0002315,4.18e-14,5;UBERON:0001016,2.15e-12,75;UBERON:0002420,5.92e-12,8;UBERON:0007245,5.92e-12,8;UBERON:0010009,5.92e-12,8;UBERON:0010011,5.92e-12,8;UBERON:0000454,5.92e-12,8;UBERON:0002240,1.09e-11,6;UBERON:0005174,1.09e-11,6;UBERON:0001137,1.09e-11,6;UBERON:0002020,7.70e-11,34;UBERON:0001017,4.76e-10,73;UBERON:0004121,8.76e-10,95;UBERON:0000924,8.76e-10,95;UBERON:0006601,8.76e-10,95;UBERON:0000073,2.97e-09,54;UBERON:0002257,4.80e-09,3;UBERON:0002038,6.51e-09,3;UBERON:0009663,6.51e-09,3;UBERON:0009661,6.51e-09,3;UBERON:0000125,6.51e-09,3;UBERON:0002308,6.51e-09,3;UBERON:0003076,7.33e-08,12;UBERON:0003057,7.33e-08,12;UBERON:0001049,2.88e-07,52;UBERON:0005068,2.88e-07,52;UBERON:0006241,2.88e-07,52;UBERON:0007135,2.88e-07,52;UBERON:0002950,9.08e-07,4;UBERON:0001891,9.08e-07,4;UBERON:0009616,9.08e-07,4;UBERON:0010286,9.08e-07,4|phase1_expression=3.04282809499109,0,0,0,0,0,0,1.93684985162364,0.703943610758334,4.91535505276186,0.171217968225505,1.11681022593471,0,1.22388563386596,0.333109761815663,0.404950534779652,0,0.157731082679119,0.137114433605739,0,1.9559956734746,0.297872853602656,0,0.319984845586813,1.14704640533585,0,0,0.646413698057667,0,0,0.221730510655305,0,1.23012957516914,0,0,0,0,0,0.7813353445238,1.0470474879476,0,0.683045484958446,0,0.251793635951155,0.101376931219515,0,0,0.218025156380447,0.219686182734472,0,0.139986421625363,0,0,0,0,2.05807548828758,0.286533439938757,0.515672092277442,1.01158230429799,1.05798195854407,0.633831403506179,0,0,0,0,0,1.19840044207362,0.384218305321555,0.414758449233911,1.75507719831198,0.841299845405528,2.57085885963423,3.53389665522582,1.10241719293459,0.958454710182364,0.919218786610021,0,1.27687338085188,1.53606533256243,1.97829431595291,3.11057988248193,2.08365348222704,2.23346399201105,3.93933827022176,1.83357897332172,1.76777151284201,3.41692033917847,4.10078780815661,6.51245262665383,2.87171928405785,0.289864488701678,0,0,0.539703191637817,0,0,0.561777680527007,0,0,0,1.40843419776681,0,0,0,0.432982082022428,0.253359865475099,1.01104889002957,0.5709193985953,0,0,0.520455980298408,0,0,0,0.117588707135705,0,0,0,0,0.161766849947409,0.220841518460394,0,0,2.04946557908083,0.83778682725382,0,0,0,0,0.299581278809645,0,0.251308704225729,0.521472960576829,0.255715457330331,0,0.486723789203273,0,0.124406970610093,0,0,0.130120442962704,0.229902104433473,0,0.452114453507145,0.0680364991513279,0.12811372028485,0.187403449119458,0,0,0,0,0,0,0,0,0.398068533636986,0,0,0,0.414251545071004,0.469052119962192,0.180062061461015,0,0.393528463494808,0.154267112887378,0,0,0.116765342367169,0,0.164167464079095,0,0,0,0,0.210289948564127,0.308713837137853,0,0.264450566663544,0,0.232236671860439,0.257734922644187,0,0,0,0,0.164698954724011,0.502670417600539,0.397912944082302,0.19496408711912,0,0,0,0.189667900953082,0.228497025219458,0,0,0,0.0701358198903186,0.126473074248515,0.295220295959204,0,0.123397163921801,0,0,0.196558995113203,0.449724224769707,0,0,0,0,0.486405680325106,0.274561413188081,0,0.372140947668503,0.624075346229121,0,0,0,0,0,0,0,0.234690248288502,0.335012514883631,0,0,0.157635144106191,0,0,0,0.345369963731791,0,0,4.89515115436839,0,0,0.642202359951168,0.703270119553219,0,0.504941854408746,0,0.390438744296638,0,0,0.668396022247182,0.566153061577665,0.404810701674894,0.584511715822624,0.395287777946524,0,0,0,0.162886959353576,0.164970122972535,0,0,0,0,0,0,0,0,0.356497378384721,0,0,0,0,0,0.129358683782755,0,0,0.356737635204141,0.493647061806363,0,0,0,0,0.16488625294148,0,0.0603129249281559,0,0.164140899745061,0,0.18542530201051,0,0.206386867963223,0.185194527369712,0.188368457004691,0,0,0,0,0,0,0,0,0,0.209088296014469,0,0.134864346384821,0,0.26175594198403,0,0,0,0.149516546043979,0,0,0,0.337912250981556,0.234714477291508,0,0,0,0,0,0.810900861160657,0.205421914329655,0,0,0.198681354781265,0.120195449519969,0,0.201932899896295,0,0.100826185136841,0.194915761479505,0,0,0,1.99787358036658,0,0.167884616364078,0,0,0,0,0,0.564751842617067,0.460325236507177,0,0.171853182343688,0.685082519770642,0,0,0,0,0,0,0,0.170733605754134,0,0.209613162627982,0,0,0,0,0,0,0.377252682772152,0,0.0640251524048693,0.0574354689556133,0,0,0.38581844092741,0,0.294397840268795,0.342869252385415,0,0.476872379894642,0.145346416632329,0,0.0846146078916765,0,0.263069711437843,0.135804113845862,0,0.118635018124174,0.29551344712669,0,0,0.192906610981141,0,0.467863216890817,0.214871054048298,0.191288332068843,0.882365676478062,0|short_description=p@chr9:40820987..40820991,-}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr9:40820987..40820991,- | |||
|description=CAGE_peak_at_chr9:40820987..40820991,- | |||
|id=chr9:40820987..40820991,- | |||
|ontology_enrichment_celltype=CL:0000221!6.28e-16!44;CL:0000133!6.28e-16!44;CL:0000393!1.36e-15!39;CL:0000211!1.36e-15!39;CL:0000055!2.49e-15!50;CL:0002319!2.84e-15!43;CL:0000540!4.57e-15!33;CL:0000047!4.57e-15!33;CL:0000031!4.57e-15!33;CL:0000404!4.57e-15!33;CL:0000117!7.58e-15!23;CL:0000337!7.58e-15!23;CL:0002321!2.31e-10!70;CL:0000220!2.31e-10!70;CL:0000723!1.37e-07!91;CL:0000048!1.37e-07!91;CL:0002371!4.38e-07!118;CL:0000034!4.98e-07!97 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.28e-29,23;CL:0000337,1.28e-29,23;CL:0000221,1.52e-24,44;CL:0000133,1.52e-24,44;CL:0002319,7.92e-23,43;CL:0000540,3.67e-22,33;CL:0000047,3.67e-22,33;CL:0000031,3.67e-22,33;CL:0000404,3.67e-22,33;CL:0000393,1.84e-20,39;CL:0000211,1.84e-20,39;CL:0002321,1.32e-16,70;CL:0000034,1.60e-15,97;CL:0000723,1.92e-15,91;CL:0000048,1.92e-15,91;CL:0002612,4.80e-09,3;CL:0002614,6.51e-09,3;CL:0002613,6.91e-09,3;CL:0000217,7.62e-07,2;CL:0000328,7.62e-07,2;CL:0002573,7.62e-07,2;CL:0002376,7.62e-07,2;CL:0000218,7.62e-07,2;CL:0000692,7.62e-07,2;CL:0002377,7.62e-07,2;CL:0002375,7.62e-07,2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!2.05e-13!75;UBERON:0001016!2.05e-13!75;UBERON:0001017!3.72e-12!73;UBERON:0005743!3.72e-12!73;UBERON:0004121!1.47e-09!102;UBERON:0000924!1.47e-09!102;UBERON:0006601!1.47e-09!102;UBERON:0001049!1.18e-08!52;UBERON:0005068!1.18e-08!52;UBERON:0006241!1.18e-08!52;UBERON:0007135!1.18e-08!52;UBERON:0002020!1.21e-08!34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001948,4.18e-14,5;UBERON:0002315,4.18e-14,5;UBERON:0001016,2.15e-12,75;UBERON:0002420,5.92e-12,8;UBERON:0007245,5.92e-12,8;UBERON:0010009,5.92e-12,8;UBERON:0010011,5.92e-12,8;UBERON:0000454,5.92e-12,8;UBERON:0002240,1.09e-11,6;UBERON:0005174,1.09e-11,6;UBERON:0001137,1.09e-11,6;UBERON:0002020,7.70e-11,34;UBERON:0001017,4.76e-10,73;UBERON:0004121,8.76e-10,95;UBERON:0000924,8.76e-10,95;UBERON:0006601,8.76e-10,95;UBERON:0000073,2.97e-09,54;UBERON:0002257,4.80e-09,3;UBERON:0002038,6.51e-09,3;UBERON:0009663,6.51e-09,3;UBERON:0009661,6.51e-09,3;UBERON:0000125,6.51e-09,3;UBERON:0002308,6.51e-09,3;UBERON:0003076,7.33e-08,12;UBERON:0003057,7.33e-08,12;UBERON:0001049,2.88e-07,52;UBERON:0005068,2.88e-07,52;UBERON:0006241,2.88e-07,52;UBERON:0007135,2.88e-07,52;UBERON:0002950,9.08e-07,4;UBERON:0001891,9.08e-07,4;UBERON:0009616,9.08e-07,4;UBERON:0010286,9.08e-07,4 | |||
|phase1_expression=3.04282809499109,0,0,0,0,0,0,1.93684985162364,0.703943610758334,4.91535505276186,0.171217968225505,1.11681022593471,0,1.22388563386596,0.333109761815663,0.404950534779652,0,0.157731082679119,0.137114433605739,0,1.9559956734746,0.297872853602656,0,0.319984845586813,1.14704640533585,0,0,0.646413698057667,0,0,0.221730510655305,0,1.23012957516914,0,0,0,0,0,0.7813353445238,1.0470474879476,0,0.683045484958446,0,0.251793635951155,0.101376931219515,0,0,0.218025156380447,0.219686182734472,0,0.139986421625363,0,0,0,0,2.05807548828758,0.286533439938757,0.515672092277442,1.01158230429799,1.05798195854407,0.633831403506179,0,0,0,0,0,1.19840044207362,0.384218305321555,0.414758449233911,1.75507719831198,0.841299845405528,2.57085885963423,3.53389665522582,1.10241719293459,0.958454710182364,0.919218786610021,0,1.27687338085188,1.53606533256243,1.97829431595291,3.11057988248193,2.08365348222704,2.23346399201105,3.93933827022176,1.83357897332172,1.76777151284201,3.41692033917847,4.10078780815661,6.51245262665383,2.87171928405785,0.289864488701678,0,0,0.539703191637817,0,0,0.561777680527007,0,0,0,1.40843419776681,0,0,0,0.432982082022428,0.253359865475099,1.01104889002957,0.5709193985953,0,0,0.520455980298408,0,0,0,0.117588707135705,0,0,0,0,0.161766849947409,0.220841518460394,0,0,2.04946557908083,0.83778682725382,0,0,0,0,0.299581278809645,0,0.251308704225729,0.521472960576829,0.255715457330331,0,0.486723789203273,0,0.124406970610093,0,0,0.130120442962704,0.229902104433473,0,0.452114453507145,0.0680364991513279,0.12811372028485,0.187403449119458,0,0,0,0,0,0,0,0,0.398068533636986,0,0,0,0.414251545071004,0.469052119962192,0.180062061461015,0,0.393528463494808,0.154267112887378,0,0,0.116765342367169,0,0.164167464079095,0,0,0,0,0.210289948564127,0.308713837137853,0,0.264450566663544,0,0.232236671860439,0.257734922644187,0,0,0,0,0.164698954724011,0.502670417600539,0.397912944082302,0.19496408711912,0,0,0,0.189667900953082,0.228497025219458,0,0,0,0.0701358198903186,0.126473074248515,0.295220295959204,0,0.123397163921801,0,0,0.196558995113203,0.449724224769707,0,0,0,0,0.486405680325106,0.274561413188081,0,0.372140947668503,0.624075346229121,0,0,0,0,0,0,0,0.234690248288502,0.335012514883631,0,0,0.157635144106191,0,0,0,0.345369963731791,0,0,4.89515115436839,0,0,0.642202359951168,0.703270119553219,0,0.504941854408746,0,0.390438744296638,0,0,0.668396022247182,0.566153061577665,0.404810701674894,0.584511715822624,0.395287777946524,0,0,0,0.162886959353576,0.164970122972535,0,0,0,0,0,0,0,0,0.356497378384721,0,0,0,0,0,0.129358683782755,0,0,0.356737635204141,0.493647061806363,0,0,0,0,0.16488625294148,0,0.0603129249281559,0,0.164140899745061,0,0.18542530201051,0,0.206386867963223,0.185194527369712,0.188368457004691,0,0,0,0,0,0,0,0,0,0.209088296014469,0,0.134864346384821,0,0.26175594198403,0,0,0,0.149516546043979,0,0,0,0.337912250981556,0.234714477291508,0,0,0,0,0,0.810900861160657,0.205421914329655,0,0,0.198681354781265,0.120195449519969,0,0.201932899896295,0,0.100826185136841,0.194915761479505,0,0,0,1.99787358036658,0,0.167884616364078,0,0,0,0,0,0.564751842617067,0.460325236507177,0,0.171853182343688,0.685082519770642,0,0,0,0,0,0,0,0.170733605754134,0,0.209613162627982,0,0,0,0,0,0,0.377252682772152,0,0.0640251524048693,0.0574354689556133,0,0,0.38581844092741,0,0.294397840268795,0.342869252385415,0,0.476872379894642,0.145346416632329,0,0.0846146078916765,0,0.263069711437843,0.135804113845862,0,0.118635018124174,0.29551344712669,0,0,0.192906610981141,0,0.467863216890817,0.214871054048298,0.191288332068843,0.882365676478062,0 | |||
|short_description=p@chr9:40820987..40820991,- | |||
}} |
Latest revision as of 02:28, 5 August 2015
Short description: | p@chr9:40820987..40820991, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr9:40820987..40820991, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.28e-29 | 23 |
neuroblast (sensu Vertebrata) | 1.28e-29 | 23 |
ectodermal cell | 1.52e-24 | 44 |
neurectodermal cell | 1.52e-24 | 44 |
neural cell | 7.92e-23 | 43 |
neuron | 3.67e-22 | 33 |
neuronal stem cell | 3.67e-22 | 33 |
neuroblast | 3.67e-22 | 33 |
electrically signaling cell | 3.67e-22 | 33 |
electrically responsive cell | 1.84e-20 | 39 |
electrically active cell | 1.84e-20 | 39 |
embryonic cell | 1.32e-16 | 70 |
stem cell | 1.60e-15 | 97 |
somatic stem cell | 1.92e-15 | 91 |
multi fate stem cell | 1.92e-15 | 91 |
neuron of the ventral spinal cord | 4.80e-09 | 3 |
neuron of the substantia nigra | 6.51e-09 | 3 |
striatum neuron | 6.91e-09 | 3 |
insulating cell | 7.62e-07 | 2 |
myelin accumulating cell | 7.62e-07 | 2 |
Schwann cell | 7.62e-07 | 2 |
non-myelinating Schwann cell | 7.62e-07 | 2 |
myelinating Schwann cell;;Schwann cell | 7.62e-07 | 2 |
terminal Schwann cell | 7.62e-07 | 2 |
immature Schwann cell | 7.62e-07 | 2 |
Schwann cell precursor | 7.62e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
regional part of spinal cord | 4.18e-14 | 5 |
gray matter of spinal cord | 4.18e-14 | 5 |
nervous system | 2.15e-12 | 75 |
basal ganglion | 5.92e-12 | 8 |
nuclear complex of neuraxis | 5.92e-12 | 8 |
aggregate regional part of brain | 5.92e-12 | 8 |
collection of basal ganglia | 5.92e-12 | 8 |
cerebral subcortex | 5.92e-12 | 8 |
spinal cord | 1.09e-11 | 6 |
dorsal region element | 1.09e-11 | 6 |
dorsum | 1.09e-11 | 6 |
gray matter | 7.70e-11 | 34 |
central nervous system | 4.76e-10 | 73 |
ectoderm-derived structure | 8.76e-10 | 95 |
ectoderm | 8.76e-10 | 95 |
presumptive ectoderm | 8.76e-10 | 95 |
regional part of nervous system | 2.97e-09 | 54 |
ventral horn of spinal cord | 4.80e-09 | 3 |
substantia nigra | 6.51e-09 | 3 |
telencephalic nucleus | 6.51e-09 | 3 |
midbrain nucleus | 6.51e-09 | 3 |
neural nucleus | 6.51e-09 | 3 |
nucleus of brain | 6.51e-09 | 3 |
posterior neural tube | 7.33e-08 | 12 |
chordal neural plate | 7.33e-08 | 12 |
neural tube | 2.88e-07 | 52 |
neural rod | 2.88e-07 | 52 |
future spinal cord | 2.88e-07 | 52 |
neural keel | 2.88e-07 | 52 |
regional part of midbrain | 9.08e-07 | 4 |
midbrain | 9.08e-07 | 4 |
presumptive midbrain | 9.08e-07 | 4 |
midbrain neural tube | 9.08e-07 | 4 |