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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS007793
|DRA_sample_Accession=CAGE@DRS007793
|accession_numbers=CAGE;DRX007899;DRR008771;DRZ000196;DRZ001581
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000955,UBERON:0004121,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0001017,UBERON:0001016
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000955,UBERON:0004121,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0001017,UBERON:0001016
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0002319,CL:0000095,CL:0000243,CL:0000125,CL:0000255
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0002319,CL:0000095,CL:0000243,CL:0000125,CL:0000255
Line 42: Line 43:
|is_a=EFO:0002091;;FF:0000210;;FF:0101583
|is_a=EFO:0002091;;FF:0000210;;FF:0101583
|is_obsolete=
|is_obsolete=
|library_id=CNhs11272
|library_ids=CNhs11272
|library_ids=CNhs11272
|name=glioblastoma cell line:T98G
|name=glioblastoma cell line:T98G
Line 87: Line 89:
|top_motifs=NKX6-1,2:1.76766026243;T:1.7186397953;RBPJ:1.47170485804;PAX1,9:1.46405011153;NFY{A,B,C}:1.33967738263;E2F1..5:1.31748549182;EN1,2:1.23152699739;TFDP1:1.22912994305;FOXL1:1.21451980334;GFI1:1.19797883381;HSF1,2:0.995395073218;NKX2-2,8:0.99268455707;ZNF143:0.790981228365;TEF:0.77505571629;NFE2L2:0.746943880234;PITX1..3:0.721281297182;POU5F1:0.710027566745;FOXA2:0.700795549628;MYB:0.689151681505;EVI1:0.677348854123;ELK1,4_GABP{A,B1}:0.658394638173;LEF1_TCF7_TCF7L1,2:0.657056576518;NKX2-3_NKX2-5:0.648788210494;FOXD3:0.596228112201;TLX1..3_NFIC{dimer}:0.592384572944;CDX1,2,4:0.579393583645;MYBL2:0.574186230785;NRF1:0.565107580684;IRF1,2:0.559505437611;FOXP1:0.545334922882;NR3C1:0.530880717921;PRDM1:0.519450639234;HMGA1,2:0.514375352771;MAZ:0.499394959809;PBX1:0.475188611676;YY1:0.471809125716;PAX8:0.470000437839;SOX{8,9,10}:0.445247622836;IKZF1:0.443018284741;STAT5{A,B}:0.442274310665;PRRX1,2:0.428823240737;SOX17:0.413025026352;NFE2:0.407456540003;SOX2:0.392709704082;PATZ1:0.361824427832;ARID5B:0.349365202487;GTF2A1,2:0.343327895538;BPTF:0.327991300767;FOXO1,3,4:0.323189862874;GATA4:0.315311780264;MZF1:0.288073542535;SOX5:0.281636528164;CEBPA,B_DDIT3:0.277481459087;FOX{I1,J2}:0.268087344249;ELF1,2,4:0.239569208983;LHX3,4:0.230551285484;SP1:0.226760247038;CRX:0.226676366384;PAX3,7:0.206367738471;HAND1,2:0.185164514534;PAX4:0.170601778247;TEAD1:0.162962131957;FOXP3:0.156553178874;XCPE1{core}:0.151747527021;FOX{F1,F2,J1}:0.151075780644;NFIX:0.145386187669;EBF1:0.139448066691;HOX{A5,B5}:0.123649870299;NKX3-1:0.118131055288;BREu{core}:0.109037298181;RXR{A,B,G}:0.0873494335122;PAX5:0.0802702521778;ZIC1..3:0.0696820148373;ADNP_IRX_SIX_ZHX:0.0625670365408;UFEwm:0.0556632118933;RFX1:0.0551325544777;BACH2:0.0455738519661;TFAP2B:0.0437465873861;DBP:0.0369350233811;CDC5L:0.0218521456368;CUX2:0.00398782170216;HNF1A:0.000853778029828;RORA:-0.00459847675071;HBP1_HMGB_SSRP1_UBTF:-0.0169622587641;MTE{core}:-0.0181893897265;AHR_ARNT_ARNT2:-0.0192029838904;GTF2I:-0.0200164122294;HNF4A_NR2F1,2:-0.0264541459194;TFCP2:-0.0305161733094;NFATC1..3:-0.0322105336878;AIRE:-0.0342821988603;NKX2-1,4:-0.0509001310797;POU2F1..3:-0.0530933422254;FOX{D1,D2}:-0.0572889045467;OCT4_SOX2{dimer}:-0.0667401948297;ATF4:-0.0690632357741;TBX4,5:-0.0695486317011;HOX{A4,D4}:-0.0814303631711;HLF:-0.0837105270593;ZNF423:-0.0862561417415;KLF4:-0.0902840384102;VSX1,2:-0.116568649487;PAX6:-0.121316951623;MED-1{core}:-0.128983199166;IKZF2:-0.134212299054;HES1:-0.135154695593;SPIB:-0.138739181475;MYFfamily:-0.143732856179;HOXA9_MEIS1:-0.147858307544;TBP:-0.170736015331;bHLH_family:-0.1739859686;IRF7:-0.177492743182;XBP1:-0.17818900057;ZFP161:-0.179909110635;ZBTB6:-0.184549868046;FOXQ1:-0.187336049439;ZNF384:-0.196444651447;TP53:-0.203034716764;POU1F1:-0.207726064136;MEF2{A,B,C,D}:-0.212648490596;ATF5_CREB3:-0.222618483768;ZBTB16:-0.224649659365;EGR1..3:-0.234438413613;FOS_FOS{B,L1}_JUN{B,D}:-0.239690319762;FOSL2:-0.254469270246;NKX3-2:-0.256994004433;ALX4:-0.271367384672;MAFB:-0.271403498363;SRF:-0.27365571056;TOPORS:-0.276681742474;NFE2L1:-0.277038243014;HIC1:-0.288419464078;RUNX1..3:-0.310244189778;GFI1B:-0.336161633158;POU6F1:-0.34795428898;NFKB1_REL_RELA:-0.356366296756;RFX2..5_RFXANK_RFXAP:-0.363330412931;TAL1_TCF{3,4,12}:-0.381777789695;MTF1:-0.390580409141;FOXM1:-0.419168822404;HOX{A6,A7,B6,B7}:-0.42615428357;NR1H4:-0.431233311475;GATA6:-0.447305176898;PDX1:-0.447460499847;ETS1,2:-0.452522619342;PPARG:-0.461305647521;RREB1:-0.470679125556;HMX1:-0.489953673693;SPI1:-0.492623195506;STAT1,3:-0.498016848844;NR5A1,2:-0.504603170846;ZNF238:-0.522424053304;SPZ1:-0.527497982487;DMAP1_NCOR{1,2}_SMARC:-0.539225667443;NFIL3:-0.556954193998;TFAP2{A,C}:-0.561953439924;ONECUT1,2:-0.569182133775;FOXN1:-0.584383076549;ESR1:-0.58802834115;REST:-0.600463119527;JUN:-0.603218172938;GCM1,2:-0.628211668709;NANOG:-0.636206502231;TLX2:-0.642000710106;GZF1:-0.643422309353;EP300:-0.669480709032;ATF2:-0.677749858652;CREB1:-0.680716536155;STAT2,4,6:-0.688638169024;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.701651075985;NANOG{mouse}:-0.709785175065;ZNF148:-0.736800337074;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.739890081268;SNAI1..3:-0.760610108553;NHLH1,2:-0.761315803267;HIF1A:-0.773034412327;NR6A1:-0.792585956088;POU3F1..4:-0.799308779911;ZEB1:-0.810615143705;TGIF1:-0.844220861095;PAX2:-0.854991772921;ATF6:-0.863719068749;MYOD1:-0.868755473414;AR:-0.87999194846;SMAD1..7,9:-0.913497226366;RXRA_VDR{dimer}:-0.934744925168;ESRRA:-0.946723755963;ALX1:-0.963610370772;SREBF1,2:-1.09902456133;TFAP4:-1.15580734675;LMO2:-1.15840697999;GLI1..3:-1.31373667559
|top_motifs=NKX6-1,2:1.76766026243;T:1.7186397953;RBPJ:1.47170485804;PAX1,9:1.46405011153;NFY{A,B,C}:1.33967738263;E2F1..5:1.31748549182;EN1,2:1.23152699739;TFDP1:1.22912994305;FOXL1:1.21451980334;GFI1:1.19797883381;HSF1,2:0.995395073218;NKX2-2,8:0.99268455707;ZNF143:0.790981228365;TEF:0.77505571629;NFE2L2:0.746943880234;PITX1..3:0.721281297182;POU5F1:0.710027566745;FOXA2:0.700795549628;MYB:0.689151681505;EVI1:0.677348854123;ELK1,4_GABP{A,B1}:0.658394638173;LEF1_TCF7_TCF7L1,2:0.657056576518;NKX2-3_NKX2-5:0.648788210494;FOXD3:0.596228112201;TLX1..3_NFIC{dimer}:0.592384572944;CDX1,2,4:0.579393583645;MYBL2:0.574186230785;NRF1:0.565107580684;IRF1,2:0.559505437611;FOXP1:0.545334922882;NR3C1:0.530880717921;PRDM1:0.519450639234;HMGA1,2:0.514375352771;MAZ:0.499394959809;PBX1:0.475188611676;YY1:0.471809125716;PAX8:0.470000437839;SOX{8,9,10}:0.445247622836;IKZF1:0.443018284741;STAT5{A,B}:0.442274310665;PRRX1,2:0.428823240737;SOX17:0.413025026352;NFE2:0.407456540003;SOX2:0.392709704082;PATZ1:0.361824427832;ARID5B:0.349365202487;GTF2A1,2:0.343327895538;BPTF:0.327991300767;FOXO1,3,4:0.323189862874;GATA4:0.315311780264;MZF1:0.288073542535;SOX5:0.281636528164;CEBPA,B_DDIT3:0.277481459087;FOX{I1,J2}:0.268087344249;ELF1,2,4:0.239569208983;LHX3,4:0.230551285484;SP1:0.226760247038;CRX:0.226676366384;PAX3,7:0.206367738471;HAND1,2:0.185164514534;PAX4:0.170601778247;TEAD1:0.162962131957;FOXP3:0.156553178874;XCPE1{core}:0.151747527021;FOX{F1,F2,J1}:0.151075780644;NFIX:0.145386187669;EBF1:0.139448066691;HOX{A5,B5}:0.123649870299;NKX3-1:0.118131055288;BREu{core}:0.109037298181;RXR{A,B,G}:0.0873494335122;PAX5:0.0802702521778;ZIC1..3:0.0696820148373;ADNP_IRX_SIX_ZHX:0.0625670365408;UFEwm:0.0556632118933;RFX1:0.0551325544777;BACH2:0.0455738519661;TFAP2B:0.0437465873861;DBP:0.0369350233811;CDC5L:0.0218521456368;CUX2:0.00398782170216;HNF1A:0.000853778029828;RORA:-0.00459847675071;HBP1_HMGB_SSRP1_UBTF:-0.0169622587641;MTE{core}:-0.0181893897265;AHR_ARNT_ARNT2:-0.0192029838904;GTF2I:-0.0200164122294;HNF4A_NR2F1,2:-0.0264541459194;TFCP2:-0.0305161733094;NFATC1..3:-0.0322105336878;AIRE:-0.0342821988603;NKX2-1,4:-0.0509001310797;POU2F1..3:-0.0530933422254;FOX{D1,D2}:-0.0572889045467;OCT4_SOX2{dimer}:-0.0667401948297;ATF4:-0.0690632357741;TBX4,5:-0.0695486317011;HOX{A4,D4}:-0.0814303631711;HLF:-0.0837105270593;ZNF423:-0.0862561417415;KLF4:-0.0902840384102;VSX1,2:-0.116568649487;PAX6:-0.121316951623;MED-1{core}:-0.128983199166;IKZF2:-0.134212299054;HES1:-0.135154695593;SPIB:-0.138739181475;MYFfamily:-0.143732856179;HOXA9_MEIS1:-0.147858307544;TBP:-0.170736015331;bHLH_family:-0.1739859686;IRF7:-0.177492743182;XBP1:-0.17818900057;ZFP161:-0.179909110635;ZBTB6:-0.184549868046;FOXQ1:-0.187336049439;ZNF384:-0.196444651447;TP53:-0.203034716764;POU1F1:-0.207726064136;MEF2{A,B,C,D}:-0.212648490596;ATF5_CREB3:-0.222618483768;ZBTB16:-0.224649659365;EGR1..3:-0.234438413613;FOS_FOS{B,L1}_JUN{B,D}:-0.239690319762;FOSL2:-0.254469270246;NKX3-2:-0.256994004433;ALX4:-0.271367384672;MAFB:-0.271403498363;SRF:-0.27365571056;TOPORS:-0.276681742474;NFE2L1:-0.277038243014;HIC1:-0.288419464078;RUNX1..3:-0.310244189778;GFI1B:-0.336161633158;POU6F1:-0.34795428898;NFKB1_REL_RELA:-0.356366296756;RFX2..5_RFXANK_RFXAP:-0.363330412931;TAL1_TCF{3,4,12}:-0.381777789695;MTF1:-0.390580409141;FOXM1:-0.419168822404;HOX{A6,A7,B6,B7}:-0.42615428357;NR1H4:-0.431233311475;GATA6:-0.447305176898;PDX1:-0.447460499847;ETS1,2:-0.452522619342;PPARG:-0.461305647521;RREB1:-0.470679125556;HMX1:-0.489953673693;SPI1:-0.492623195506;STAT1,3:-0.498016848844;NR5A1,2:-0.504603170846;ZNF238:-0.522424053304;SPZ1:-0.527497982487;DMAP1_NCOR{1,2}_SMARC:-0.539225667443;NFIL3:-0.556954193998;TFAP2{A,C}:-0.561953439924;ONECUT1,2:-0.569182133775;FOXN1:-0.584383076549;ESR1:-0.58802834115;REST:-0.600463119527;JUN:-0.603218172938;GCM1,2:-0.628211668709;NANOG:-0.636206502231;TLX2:-0.642000710106;GZF1:-0.643422309353;EP300:-0.669480709032;ATF2:-0.677749858652;CREB1:-0.680716536155;STAT2,4,6:-0.688638169024;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.701651075985;NANOG{mouse}:-0.709785175065;ZNF148:-0.736800337074;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.739890081268;SNAI1..3:-0.760610108553;NHLH1,2:-0.761315803267;HIF1A:-0.773034412327;NR6A1:-0.792585956088;POU3F1..4:-0.799308779911;ZEB1:-0.810615143705;TGIF1:-0.844220861095;PAX2:-0.854991772921;ATF6:-0.863719068749;MYOD1:-0.868755473414;AR:-0.87999194846;SMAD1..7,9:-0.913497226366;RXRA_VDR{dimer}:-0.934744925168;ESRRA:-0.946723755963;ALX1:-0.963610370772;SREBF1,2:-1.09902456133;TFAP4:-1.15580734675;LMO2:-1.15840697999;GLI1..3:-1.31373667559
|xref=
|xref=
}} {{DRAAccessionNumbers
|DRA_sample_Accession=CAGE@DRS007793
|accession_numbers=DRX007899;DRR008771;DRZ000196;DRZ001581;CAGE
|library_id=CNhs11272
}}
}}

Revision as of 19:50, 17 October 2013


Name:glioblastoma cell line:T98G
Species:Human (Homo sapiens)
Library ID:CNhs11272
Sample type:cell lines
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissuebrain
dev stageNA
sexmale
age61
cell typeglioblast
cell lineT98G
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  DRS007793
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11272 CAGE DRX007899 DRR008771
Accession ID Hg19

Library idBAMCTSS
CNhs11272 DRZ000196 DRZ001581
Download raw sequence, BAM & CTSS
Hg19
BAMCTSS
[{{{hg19bam}}} download][{{{hg19ctss}}} donwload]
Hg38
BAMCTSS
[{{{hg38bam}}} download][{{{hg38ctss}}} donwload]


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-3.014979e-4
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.61
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.258
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0574
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.031
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.0422
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.0422
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.144
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.198
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.0422
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.508
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.597
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.0806
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.00292
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.0234
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.566
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.136
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.234
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11272

Jaspar motifP-value
MA0002.20.0191
MA0003.10.0185
MA0004.10.227
MA0006.10.973
MA0007.10.241
MA0009.10.543
MA0014.10.831
MA0017.10.0134
MA0018.20.267
MA0019.10.781
MA0024.12.05695e-7
MA0025.10.518
MA0027.10.669
MA0028.10.0036
MA0029.10.439
MA0030.10.661
MA0031.10.701
MA0035.20.205
MA0038.17.19311e-6
MA0039.20.849
MA0040.10.765
MA0041.10.192
MA0042.10.53
MA0043.10.434
MA0046.10.886
MA0047.20.35
MA0048.10.0437
MA0050.12.34039e-4
MA0051.10.00144
MA0052.10.048
MA0055.10.066
MA0057.10.612
MA0058.10.0488
MA0059.10.279
MA0060.12.70681e-16
MA0061.10.00609
MA0062.20.0238
MA0065.20.00485
MA0066.10.0728
MA0067.10.69
MA0068.10.208
MA0069.10.555
MA0070.10.168
MA0071.10.129
MA0072.10.26
MA0073.10.991
MA0074.10.319
MA0076.18.01862e-4
MA0077.10.165
MA0078.10.916
MA0079.20.973
MA0080.22.01526e-9
MA0081.10.396
MA0083.10.223
MA0084.10.32
MA0087.10.882
MA0088.10.371
MA0090.10.414
MA0091.10.178
MA0092.10.284
MA0093.10.199
MA0099.20.0469
MA0100.10.327
MA0101.10.172
MA0102.20.198
MA0103.11.20709e-4
MA0104.20.585
MA0105.10.00145
MA0106.10.589
MA0107.10.0405
MA0108.20.0109
MA0111.10.9
MA0112.20.00192
MA0113.10.0935
MA0114.10.266
MA0115.10.6
MA0116.10.00843
MA0117.10.247
MA0119.10.947
MA0122.10.136
MA0124.10.379
MA0125.10.439
MA0131.10.172
MA0135.10.173
MA0136.14.22339e-5
MA0137.20.515
MA0138.20.0183
MA0139.10.221
MA0140.10.931
MA0141.10.0432
MA0142.10.934
MA0143.10.955
MA0144.10.0151
MA0145.10.278
MA0146.10.484
MA0147.10.558
MA0148.10.341
MA0149.10.771
MA0150.10.35
MA0152.10.0336
MA0153.10.837
MA0154.10.0139
MA0155.10.03
MA0156.10.502
MA0157.10.789
MA0159.10.106
MA0160.10.0546
MA0162.10.347
MA0163.11.95228e-4
MA0164.10.503
MA0258.10.00973
MA0259.10.897



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11272

Novel motifP-value
10.778
100.454
1000.397
1010.415
1020.551
1030.501
1040.761
1050.843
1060.00103
1070.178
1080.53
1090.205
110.594
1100.95
1110.707
1120.00902
1130.663
1140.361
1150.225
1160.392
1170.75
1180.939
1190.197
120.463
1200.829
1210.427
1220.598
1230.349
1240.472
1250.442
1260.289
1270.336
1284.95285e-4
1290.00215
130.782
1300.00326
1310.0995
1320.542
1330.294
1340.673
1350.201
1360.631
1370.255
1380.456
1390.00824
140.489
1400.796
1410.396
1420.802
1430.0677
1440.769
1450.106
1460.59
1470.874
1480.281
1490.169
150.49
1500.909
1510.153
1520.134
1530.237
1540.256
1550.00757
1560.811
1570.904
1580.149
1590.627
160.313
1600.0729
1610.701
1620.559
1630.495
1640.41
1650.605
1660.818
1670.83
1680.616
1690.16
170.236
180.266
190.608
20.178
200.78
210.967
220.365
230.123
240.549
250.464
260.572
270.205
280.898
290.66
30.605
300.876
310.145
320.056
330.377
340.305
350.344
360.333
370.257
380.264
390.752
40.611
400.273
410.143
420.723
430.0775
440.202
450.487
460.27
470.836
480.672
490.0843
50.508
500.841
510.216
520.178
530.956
540.376
550.51
560.701
570.595
580.354
590.0953
60.831
600.0676
610.464
620.0655
630.468
640.422
650.142
660.00416
670.533
680.455
690.423
70.449
700.0145
710.697
720.365
730.174
740.0277
750.48
760.848
770.285
780.194
790.415
80.429
800.381
810.315
820.0739
830.895
840.911
850.00116
860.379
870.374
880.319
890.0498
90.337
900.827
910.119
920.0204
930.334
940.983
950.278
960.233
970.82
980.0788
990.829



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11272


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0002319 (neural cell)
0000095 (neuron associated cell)
0000243 (glial cell (sensu Vertebrata))
0000125 (glial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
3093 (nervous system cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000955 (brain)
0004121 (ectoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0101530 (glioblastoma cell line sample)
0100711 (glioma cell line sample)
0100255 (brain cell line sample)
0100690 (brain cancer cell line sample)
0101531 (glial cell line sample)
0101583 (T-98G cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000339 (glioblast (sensu Vertebrata))
CL:0000221 (ectodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006238 (future brain)
UBERON:0010316 (germ layer / neural crest)

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