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|coexpression_dpi_cluster_scores_median=0.170392729704821,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.268156494256252,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0257492958628459,0.0419359757688424,0,0.251003064477134,0.957334705435242,0.727144795436858,0.730195099592919,0.617459408669841,0.830493870128398,0,0,0,0,0,0,0.176782520138305,0.211404452182316,0.213207239280454,0.22471147363102,0.276299728348189,0,0,0,0.84460155691904,1.0988767235784,0.0818436986734574,0.0549981337564001,0.0829019901297716,0.698893021565912,0.747511468674003,0.0913591399907948,0.102603845937379,0,0.936423717425618,0.879491308113552,0.926403486308879,0.198769405569515,0.202491983556557,0.134782095605604,0.921717119016934,0.740528548855511,0.859408495130158,0.559802751830034,0.486226735707772,0.263975340478526,0.0612459843014792,0.146357843355171,0,0,0,0,0,0,0.107511441879825,0,0,0,0.281137647143802,0,0,0,0,0,0,0.127930999153497,0,0,0,0,0,0,0,0,0,0.00739082777234695,0,0.0651189800845078,0,0,0,0.673579267951729,0.683366598074928,0,0,0,0,0.883834173089126,0.745038093230261,0.265701947202526,0.674864995288752,0.604926981931773,0.924374830845126,0.826358136851318,0.0183522152083221,0.0509235292940968,0,0.0829439327499637,0.0151254526212569,0,0,0.00980415359512855,0.0806659819199616,0.117691287167579,0.102639062529946,0.240924129628619,0,0,0,0,0,0,0.00399716076969941,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.679901825188812,0.295990055251832,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0294389011296462,0.0266298923127834,0,0.0203374433126576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.897205263477894,0.898888477169033,0,0,0.0762052928923888,0,0.0423637962789889,0.0813687477930447,0.123701151005011,0.150102906936704,0,0,0.144663790035931,0.671399244883394,0.0302723598887293,0.0711694759496908,0,0.0663147875126409,0,0,0,0,0,0,0,0,0,0,0,0,0.0226715997208885,0,0.0528318955547673,0,0,0.0712812415377886,0.0661577744756082,0.115432414129512,0,0,0,0,0,0.0254340553719351,0.0489745727197172,0,0,1.00766800204996,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00783367562271745,0,0.034489466458534,0,0,0,0,0,0,0,0,0,0,0.0467638821472642,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0014862879492226,0,0,0,0.161019750956122,0.0747003483965965,0.0641992228021084,0,0,0.582490536396736,0.662720404307406,0.58709079061676,0.519827376468231,0.634320099813795,0.597788310825105,0.587134707003001,0.51209791841336,0.59517471100111,0.50637209555025,0.0294239251444808,0,0.0684580848992459,0.0478057196733518,0.0747852602253282,0,0.0871588832444397,0.081359932135904,0,0.0978461107777356,0.098117166361508,0.0783074239853372,0.104319901937896,0.102381024292777,0.0997261746927171,0,0.0905291472420136,0.0766073954291401,0.00407739031131768,0.112067779638927,0.128033729919821,0.0709519923534245,0.0830891835126099,0.0850981159724191,0.0748964051866952,0.0904676818124212,0.0538696871832051,0,0.0553034373508932,0,0.0486884105045233,0.0780974029773103,0,0.117229416500102,0.0716367820153586,0.0968441960560167,0.091291089277545,0.0845301845292944,0.0760168881589905,0.0865703124974023,0.0905641158318875
|coexpression_dpi_cluster_scores_median=0.170392729704821,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.268156494256252,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0257492958628459,0.0419359757688424,0,0.251003064477134,0.957334705435242,0.727144795436858,0.730195099592919,0.617459408669841,0.830493870128398,0,0,0,0,0,0,0.176782520138305,0.211404452182316,0.213207239280454,0.22471147363102,0.276299728348189,0,0,0,0.84460155691904,1.0988767235784,0.0818436986734574,0.0549981337564001,0.0829019901297716,0.698893021565912,0.747511468674003,0.0913591399907948,0.102603845937379,0,0.936423717425618,0.879491308113552,0.926403486308879,0.198769405569515,0.202491983556557,0.134782095605604,0.921717119016934,0.740528548855511,0.859408495130158,0.559802751830034,0.486226735707772,0.263975340478526,0.0612459843014792,0.146357843355171,0,0,0,0,0,0,0.107511441879825,0,0,0,0.281137647143802,0,0,0,0,0,0,0.127930999153497,0,0,0,0,0,0,0,0,0,0.00739082777234695,0,0.0651189800845078,0,0,0,0.673579267951729,0.683366598074928,0,0,0,0,0.883834173089126,0.745038093230261,0.265701947202526,0.674864995288752,0.604926981931773,0.924374830845126,0.826358136851318,0.0183522152083221,0.0509235292940968,0,0.0829439327499637,0.0151254526212569,0,0,0.00980415359512855,0.0806659819199616,0.117691287167579,0.102639062529946,0.240924129628619,0,0,0,0,0,0,0.00399716076969941,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.679901825188812,0.295990055251832,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0294389011296462,0.0266298923127834,0,0.0203374433126576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.897205263477894,0.898888477169033,0,0,0.0762052928923888,0,0.0423637962789889,0.0813687477930447,0.123701151005011,0.150102906936704,0,0,0.144663790035931,0.671399244883394,0.0302723598887293,0.0711694759496908,0,0.0663147875126409,0,0,0,0,0,0,0,0,0,0,0,0,0.0226715997208885,0,0.0528318955547673,0,0,0.0712812415377886,0.0661577744756082,0.115432414129512,0,0,0,0,0,0.0254340553719351,0.0489745727197172,0,0,1.00766800204996,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00783367562271745,0,0.034489466458534,0,0,0,0,0,0,0,0,0,0,0.0467638821472642,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0014862879492226,0,0,0,0.161019750956122,0.0747003483965965,0.0641992228021084,0,0,0.582490536396736,0.662720404307406,0.58709079061676,0.519827376468231,0.634320099813795,0.597788310825105,0.587134707003001,0.51209791841336,0.59517471100111,0.50637209555025,0.0294239251444808,0,0.0684580848992459,0.0478057196733518,0.0747852602253282,0,0.0871588832444397,0.081359932135904,0,0.0978461107777356,0.098117166361508,0.0783074239853372,0.104319901937896,0.102381024292777,0.0997261746927171,0,0.0905291472420136,0.0766073954291401,0.00407739031131768,0.112067779638927,0.128033729919821,0.0709519923534245,0.0830891835126099,0.0850981159724191,0.0748964051866952,0.0904676818124212,0.0538696871832051,0,0.0553034373508932,0,0.0486884105045233,0.0780974029773103,0,0.117229416500102,0.0716367820153586,0.0968441960560167,0.091291089277545,0.0845301845292944,0.0760168881589905,0.0865703124974023,0.0905641158318875
|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000221!2.40e-21!44;CL:0000133!2.40e-21!44;CL:0002319!1.11e-20!43;CL:0000055!7.35e-18!49;CL:0000540!1.29e-13!33;CL:0000047!1.29e-13!33;CL:0000031!1.29e-13!33;CL:0000404!1.29e-13!33;CL:0000117!1.94e-13!23;CL:0000337!1.94e-13!23;CL:0000393!2.86e-11!39;CL:0000211!2.86e-11!39;CL:0002321!6.61e-09!70;CL:0000333!2.53e-08!10;CL:0000095!2.53e-08!10;CL:0000243!2.53e-08!10;CL:0000123!2.53e-08!10;CL:0000125!2.53e-08!10;CL:0000030!2.53e-08!10;CL:0000339!2.53e-08!10;CL:0002453!7.54e-08!8
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0001016!1.09e-39!75;UBERON:0001017!9.30e-39!73;UBERON:0004121!6.39e-37!95;UBERON:0000924!6.39e-37!95;UBERON:0006601!6.39e-37!95;UBERON:0000073!2.32e-30!54;UBERON:0002346!6.40e-29!64;UBERON:0003075!6.40e-29!64;UBERON:0007284!6.40e-29!64;UBERON:0001049!1.97e-28!52;UBERON:0005068!1.97e-28!52;UBERON:0006241!1.97e-28!52;UBERON:0007135!1.97e-28!52;UBERON:0010371!7.39e-27!73;UBERON:0000955!2.17e-24!47;UBERON:0006238!2.17e-24!47;UBERON:0002616!1.37e-23!46;UBERON:0002020!2.30e-21!34;UBERON:0003056!1.74e-19!49;UBERON:0003080!1.20e-18!40;UBERON:0002780!8.68e-18!39;UBERON:0001890!8.68e-18!39;UBERON:0006240!8.68e-18!39;UBERON:0003528!1.05e-17!29;UBERON:0002791!1.05e-17!29;UBERON:0001893!1.05e-17!29;UBERON:0010314!7.51e-16!92;UBERON:0000956!3.90e-12!21;UBERON:0001869!3.90e-12!21;UBERON:0000203!3.90e-12!21;UBERON:0002619!1.01e-10!17;UBERON:0003076!1.53e-10!12;UBERON:0003057!1.53e-10!12;UBERON:0002021!3.67e-08!10;UBERON:0000411!3.67e-08!10;UBERON:0001950!3.67e-08!10;UBERON:0002420!7.43e-07!8;UBERON:0007245!7.43e-07!8;UBERON:0010009!7.43e-07!8;UBERON:0010011!7.43e-07!8;UBERON:0000454!7.43e-07!8
}}
}}

Revision as of 19:05, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr12:112910501..112910517,-p1@Ckb
Mm9::chr12:120477061..120477075,-p9@Itgb8
Mm9::chr12:120477090..120477107,-p11@Itgb8
Mm9::chr12:81619544..81619562,+p3@Galntl1
Mm9::chr13:58909624..58909647,+p6@Ntrk2
Mm9::chr13:58910044..58910113,+p2@Ntrk2
Mm9::chr14:26588278..26588288,-p@chr14:26588278..26588288
-
Mm9::chr14:26588296..26588351,-p2@Zcchc24
Mm9::chr15:81767125..81767146,-p@chr15:81767125..81767146
-
Mm9::chr15:85408299..85408332,-p2@Wnt7b
Mm9::chr16:91225654..91225671,+p2@Olig2
Mm9::chr18:74023269..74023302,+p2@Mro
Mm9::chr18:74023346..74023367,+p3@Mro
Mm9::chr19:40439653..40439683,-p@chr19:40439653..40439683
-
Mm9::chr1:137271513..137271523,-p8@Shisa4
Mm9::chr2:25947296..25947311,-p10@Nacc2
Mm9::chr2:25947351..25947375,-p3@Nacc2
Mm9::chr2:25947434..25947443,-p11@Nacc2
Mm9::chr2:25947453..25947479,-p5@Nacc2
Mm9::chr2:25947481..25947508,-p2@Nacc2
Mm9::chr2:25947538..25947553,-p6@Nacc2
Mm9::chr2:25947568..25947579,-p8@Nacc2
Mm9::chr5:138199361..138199441,+p2@Tsc22d4
Mm9::chr7:125735998..125736019,+p2@uc009jkd.1
Mm9::chr7:149558115..149558197,-p1@6330512M04Rik
Mm9::chr7:149558226..149558241,-p4@6330512M04Rik
Mm9::chr7:31077020..31077031,+p10@Clip3
Mm9::chr7:4874446..4874498,+p1@Nat14
Mm9::chr9:37175212..37175241,+p1@Hepacam
Mm9::chr9:37175262..37175267,+p@chr9:37175262..37175267
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
nervous system1.09e-3975
central nervous system9.30e-3973
ectoderm-derived structure6.39e-3795
ectoderm6.39e-3795
presumptive ectoderm6.39e-3795
regional part of nervous system2.32e-3054
neurectoderm6.40e-2964
neural plate6.40e-2964
presumptive neural plate6.40e-2964
neural tube1.97e-2852
neural rod1.97e-2852
future spinal cord1.97e-2852
neural keel1.97e-2852
ecto-epithelium7.39e-2773
brain2.17e-2447
future brain2.17e-2447
regional part of brain1.37e-2346
gray matter2.30e-2134
pre-chordal neural plate1.74e-1949
anterior neural tube1.20e-1840
regional part of forebrain8.68e-1839
forebrain8.68e-1839
future forebrain8.68e-1839
brain grey matter1.05e-1729
regional part of telencephalon1.05e-1729
telencephalon1.05e-1729
structure with developmental contribution from neural crest7.51e-1692
cerebral cortex3.90e-1221
cerebral hemisphere3.90e-1221
pallium3.90e-1221
regional part of cerebral cortex1.01e-1017
posterior neural tube1.53e-1012
chordal neural plate1.53e-1012
occipital lobe3.67e-0810
visual cortex3.67e-0810
neocortex3.67e-0810
basal ganglion7.43e-078
nuclear complex of neuraxis7.43e-078
aggregate regional part of brain7.43e-078
collection of basal ganglia7.43e-078
cerebral subcortex7.43e-078


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}