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|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0.789928356688232,0.194002013165964,0.492282644971063,0.04132325702527,0.145774498636601,0.531071283364744,0.749574411537631,0,0.206130935280821,0,0.252526681274343,0.349088981842632,0,0.0405906036557121,0.299487580021415,0.451540601931182,0.0644551523736777,0.140860746123774,0,0,0,0,0,0,0,0,0,0,0,0,0.779768124052708,0.408692801612187,0.410029642905161,0.756320495326226,0.644953078647111,0.505946429697087,0,0,0,0,0,0,0,0,0,0.0673620022139481,0.665281732208036,0.868396495596429,0,0,0,0,0,0,0,0,0.61801136436124,1.03697458171985,0.495744142636618,0.342106802711204,0.332974415283731,0,0,0,0.022552774193626,0,0,0,0,0,0.0987733636723519,0.164596587144155,0,0,0,0.19266946376396,0.193893011938994,0,0,0.0578074284787346,0,0.0317017435824471,0,0,0,0,0,0,0,0.107511441879825,0,0,0,0,0,0,0,0,0,0,0.0469568706916304,0.360723912934686,0,0,0,0,0,0,0,0,0.0699176791901062,0.275221618407307,0,8.89778804729208e-05,0,0,0,0,0,0.574696428879744,0,0.336988951915463,0,0,0,0,0,0,0,0,0.0509235292940968,0.0978549673988937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144443638242771,0.0994554632344034,0.243163887202043,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0652566657696677,0,0.501742202721087,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0324446970713793,0.072674763619024,0.0642538110976656,0.0659019793256198,0.141506496310305,0,0.603774852447547,0.415258590035893,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0372618161093056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915514965999916,0,0,0,0,0,0,0,0,0,0.127668937363575,0.122719615887678,0.0502735687755404,0.0749511157581746,0.104960908225686,0.0770550402737894,0.178958335501038,0.107177024667156,0.228143573959082,0,0,0,0,0,0,0,0.034489466458534,0,0.0529304404135566,0,0,0,0,0,0,0,0,0,0,0,0,0.289596390303526,0,0.0424616899933645,0.0951827761665982,0.132916844396872,0.340858010137763,0.0492938041367021,0.159286971335735,0.205691101905468,0.185668953329676,0.256864285081788,0.172395483787789,0.270889894994264,0.272438640961564,0,0,0,0,0,0.0518476403109517,0.0489767884212554,0,0.0899758789379145,0,0,0.196699873644339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0596387295197733,0,0,0,0,0,0,0,0,0,0,0.00589418297155714,0,0,0,0.0551343880978132,0,0,0.0686873955053196,0.0760168881589905,0,0
|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0.789928356688232,0.194002013165964,0.492282644971063,0.04132325702527,0.145774498636601,0.531071283364744,0.749574411537631,0,0.206130935280821,0,0.252526681274343,0.349088981842632,0,0.0405906036557121,0.299487580021415,0.451540601931182,0.0644551523736777,0.140860746123774,0,0,0,0,0,0,0,0,0,0,0,0,0.779768124052708,0.408692801612187,0.410029642905161,0.756320495326226,0.644953078647111,0.505946429697087,0,0,0,0,0,0,0,0,0,0.0673620022139481,0.665281732208036,0.868396495596429,0,0,0,0,0,0,0,0,0.61801136436124,1.03697458171985,0.495744142636618,0.342106802711204,0.332974415283731,0,0,0,0.022552774193626,0,0,0,0,0,0.0987733636723519,0.164596587144155,0,0,0,0.19266946376396,0.193893011938994,0,0,0.0578074284787346,0,0.0317017435824471,0,0,0,0,0,0,0,0.107511441879825,0,0,0,0,0,0,0,0,0,0,0.0469568706916304,0.360723912934686,0,0,0,0,0,0,0,0,0.0699176791901062,0.275221618407307,0,8.89778804729208e-05,0,0,0,0,0,0.574696428879744,0,0.336988951915463,0,0,0,0,0,0,0,0,0.0509235292940968,0.0978549673988937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144443638242771,0.0994554632344034,0.243163887202043,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0652566657696677,0,0.501742202721087,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0324446970713793,0.072674763619024,0.0642538110976656,0.0659019793256198,0.141506496310305,0,0.603774852447547,0.415258590035893,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0372618161093056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915514965999916,0,0,0,0,0,0,0,0,0,0.127668937363575,0.122719615887678,0.0502735687755404,0.0749511157581746,0.104960908225686,0.0770550402737894,0.178958335501038,0.107177024667156,0.228143573959082,0,0,0,0,0,0,0,0.034489466458534,0,0.0529304404135566,0,0,0,0,0,0,0,0,0,0,0,0,0.289596390303526,0,0.0424616899933645,0.0951827761665982,0.132916844396872,0.340858010137763,0.0492938041367021,0.159286971335735,0.205691101905468,0.185668953329676,0.256864285081788,0.172395483787789,0.270889894994264,0.272438640961564,0,0,0,0,0,0.0518476403109517,0.0489767884212554,0,0.0899758789379145,0,0,0.196699873644339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0596387295197733,0,0,0,0,0,0,0,0,0,0,0.00589418297155714,0,0,0,0.0551343880978132,0,0,0.0686873955053196,0.0760168881589905,0,0
|gostat_on_MCL_coexpression=GO:0050901;leukocyte tethering or rolling;0.00230099161781625;20345!GO:0045123;cellular extravasation;0.00345148742672437;20345!GO:0007159;leukocyte adhesion;0.00383498602969375;20345!GO:0050900;leukocyte migration;0.00891634251903797;20345!GO:0005529;sugar binding;0.0372760642086232;20345!GO:0016337;cell-cell adhesion;0.0372760642086232;20345!GO:0030246;carbohydrate binding;0.0372760642086232;20345!GO:0016477;cell migration;0.0372760642086232;20345!GO:0051674;localization of cell;0.0372760642086232;20345!GO:0006928;cell motility;0.0372760642086232;20345!
|gostat_on_MCL_coexpression=GO:0050901;leukocyte tethering or rolling;0.00230099161781625;20345!GO:0045123;cellular extravasation;0.00345148742672437;20345!GO:0007159;leukocyte adhesion;0.00383498602969375;20345!GO:0050900;leukocyte migration;0.00891634251903797;20345!GO:0005529;sugar binding;0.0372760642086232;20345!GO:0016337;cell-cell adhesion;0.0372760642086232;20345!GO:0030246;carbohydrate binding;0.0372760642086232;20345!GO:0016477;cell migration;0.0372760642086232;20345!GO:0051674;localization of cell;0.0372760642086232;20345!GO:0006928;cell motility;0.0372760642086232;20345!
|ontology_enrichment_celltype=CL:0000988!7.63e-16!32;CL:0002032!7.63e-16!32;CL:0000037!7.63e-16!32;CL:0000566!7.63e-16!32;CL:0000837!7.63e-16!32;CL:0000738!1.88e-15!17;CL:0002087!1.88e-15!17;CL:0002031!3.07e-13!25;CL:0000838!1.22e-12!12;CL:0002320!3.07e-12!46;CL:0000134!3.07e-12!46;CL:0000084!3.68e-12!11;CL:0000827!3.68e-12!11;CL:0000542!2.28e-11!13;CL:0000051!2.28e-11!13;CL:0000791!3.51e-10!9;CL:0000789!3.51e-10!9;CL:0002420!3.51e-10!9;CL:0002419!3.51e-10!9;CL:0000790!3.51e-10!9;CL:0000219!7.82e-10!54;CL:0000624!5.60e-09!8;CL:0002242!1.55e-08!16;CL:0000557!9.50e-08!7;CL:0000034!1.43e-07!97;CL:0000723!7.90e-07!91;CL:0000048!7.90e-07!91
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002193!1.05e-28!48;UBERON:0002405!1.05e-28!48;UBERON:0002390!3.04e-26!45;UBERON:0003061!3.04e-26!45;UBERON:0004177!2.99e-16!29;UBERON:0005057!2.99e-16!29;UBERON:0000077!2.63e-13!35;UBERON:0003081!8.68e-13!87;UBERON:0002370!1.68e-12!23;UBERON:0000974!1.68e-12!23;UBERON:0004807!1.68e-12!23;UBERON:0005058!1.68e-12!23;UBERON:0003351!1.68e-12!23;UBERON:0009113!1.68e-12!23;UBERON:0003295!1.68e-12!23;UBERON:0009722!1.68e-12!23;UBERON:0005562!1.68e-12!23;UBERON:0007690!1.68e-12!23;UBERON:0002384!3.07e-12!46;UBERON:0006562!9.87e-12!24;UBERON:0003408!9.87e-12!24;UBERON:0001557!9.87e-12!24;UBERON:0001042!9.87e-12!24;UBERON:0008814!9.87e-12!24;UBERON:0009145!9.87e-12!24;UBERON:0002371!1.89e-10!16;UBERON:0000072!8.75e-10!27;UBERON:0000926!2.13e-09!120;UBERON:0004120!2.13e-09!120;UBERON:0006603!2.13e-09!120;UBERON:0001474!1.08e-08!22;UBERON:0004765!1.08e-08!22;UBERON:0001434!1.08e-08!22;UBERON:0000065!3.46e-08!41;UBERON:0001004!7.76e-08!42;UBERON:0002204!1.10e-07!32
}}
}}

Revision as of 19:31, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr17:36005663..36005675,+p@chr17:36005663..36005675
+
Mm9::chr5:114270108..114270129,-p@chr5:114270108..114270129
-
Mm9::chr5:114270168..114270180,-p@chr5:114270168..114270180
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0050901leukocyte tethering or rolling0.00230099161781625
GO:0045123cellular extravasation0.00345148742672437
GO:0007159leukocyte adhesion0.00383498602969375
GO:0050900leukocyte migration0.00891634251903797
GO:0005529sugar binding0.0372760642086232
GO:0016337cell-cell adhesion0.0372760642086232
GO:0030246carbohydrate binding0.0372760642086232
GO:0016477cell migration0.0372760642086232
GO:0051674localization of cell0.0372760642086232
GO:0006928cell motility0.0372760642086232



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
hematopoietic cell7.63e-1632
hematopoietic oligopotent progenitor cell7.63e-1632
hematopoietic stem cell7.63e-1632
angioblastic mesenchymal cell7.63e-1632
hematopoietic multipotent progenitor cell7.63e-1632
leukocyte1.88e-1517
nongranular leukocyte1.88e-1517
hematopoietic lineage restricted progenitor cell3.07e-1325
lymphoid lineage restricted progenitor cell1.22e-1212
connective tissue cell3.07e-1246
mesenchymal cell3.07e-1246
T cell3.68e-1211
pro-T cell3.68e-1211
lymphocyte2.28e-1113
common lymphoid progenitor2.28e-1113
mature alpha-beta T cell3.51e-109
alpha-beta T cell3.51e-109
immature T cell3.51e-109
mature T cell3.51e-109
immature alpha-beta T cell3.51e-109
motile cell7.82e-1054
CD4-positive, alpha-beta T cell5.60e-098
nucleate cell1.55e-0816
granulocyte monocyte progenitor cell9.50e-087
stem cell1.43e-0797
somatic stem cell7.90e-0791
multi fate stem cell7.90e-0791

Uber Anatomy
Ontology termp-valuen
hemolymphoid system1.05e-2848
immune system1.05e-2848
hematopoietic system3.04e-2645
blood island3.04e-2645
hemopoietic organ2.99e-1629
immune organ2.99e-1629
mixed endoderm/mesoderm-derived structure2.63e-1335
lateral plate mesoderm8.68e-1387
thymus1.68e-1223
neck1.68e-1223
respiratory system epithelium1.68e-1223
hemolymphoid system gland1.68e-1223
pharyngeal epithelium1.68e-1223
thymic region1.68e-1223
pharyngeal gland1.68e-1223
entire pharyngeal arch endoderm1.68e-1223
thymus primordium1.68e-1223
early pharyngeal endoderm1.68e-1223
connective tissue3.07e-1246
pharynx9.87e-1224
gland of gut9.87e-1224
upper respiratory tract9.87e-1224
chordate pharynx9.87e-1224
pharyngeal arch system9.87e-1224
pharyngeal region of foregut9.87e-1224
bone marrow1.89e-1016
segment of respiratory tract8.75e-1027
mesoderm2.13e-09120
mesoderm-derived structure2.13e-09120
presumptive mesoderm2.13e-09120
bone element1.08e-0822
skeletal element1.08e-0822
skeletal system1.08e-0822
respiratory tract3.46e-0841
respiratory system7.76e-0842
musculoskeletal system1.10e-0732


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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