Coexpression cluster:C2306: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 4: | Line 4: | ||
|gostat_on_coexpression_clusters=GO:0004726!non-membrane spanning protein tyrosine phosphatase activity!0.00927234192864712!5775 | |gostat_on_coexpression_clusters=GO:0004726!non-membrane spanning protein tyrosine phosphatase activity!0.00927234192864712!5775 | ||
|id=C2306 | |id=C2306 | ||
|ontology_enrichment_celltype=CL:0000542! | |ontology_enrichment_celltype=CL:0002242!1.15e-21!55;CL:0000542!5.63e-21!53;CL:0000051!5.63e-21!53;CL:0000838!1.62e-20!52;CL:0000791!1.89e-12!18;CL:0000789!1.89e-12!18;CL:0002420!1.89e-12!18;CL:0002419!1.89e-12!18;CL:0000790!1.89e-12!18;CL:0000084!6.77e-12!25;CL:0000827!6.77e-12!25;CL:0000625!1.68e-08!11;CL:0000945!2.57e-08!24;CL:0000826!2.57e-08!24;CL:0000236!1.58e-07!14 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon=UBERON:0007023! | |ontology_enrichment_uberon=UBERON:0007023!4.46e-22!114;UBERON:0001017!1.48e-13!81;UBERON:0001016!1.72e-12!89;UBERON:0001049!1.55e-11!56;UBERON:0005068!1.55e-11!56;UBERON:0006241!1.55e-11!56;UBERON:0007135!1.55e-11!56;UBERON:0000073!2.47e-11!53;UBERON:0002616!2.47e-11!53;UBERON:0002780!3.12e-11!41;UBERON:0001890!3.12e-11!41;UBERON:0003080!3.12e-11!41;UBERON:0006240!3.12e-11!41;UBERON:0000955!3.47e-10!68;UBERON:0006238!3.47e-10!68;UBERON:0001893!5.90e-09!34;UBERON:0011216!1.37e-08!223;UBERON:0003528!1.39e-08!34;UBERON:0002020!1.39e-08!34;UBERON:0002791!2.35e-08!32;UBERON:0001869!2.44e-08!32;UBERON:0000178!3.44e-07!15;UBERON:0000179!3.44e-07!15;UBERON:0000463!3.44e-07!15;UBERON:0000956!7.95e-07!25;UBERON:0000203!7.95e-07!25 | ||
|tf_chipseq_enrich=BCLAF1#9774;2:10.8263238050609:0.0120220381643258:0.0436507316035329!BRCA1#672;3:15.1381729824178:0.000468218442143119:0.00430043671435979!CHD2#1106;4:10.3440228341169:8.73193255208051e-05:0.00128971051309113!E2F6#1876;4:5.01715573169739:0.0015780219347306:0.00995873060857629!ELF1#1997;4:4.25809795880754:0.00304152556578124:0.0160699088665264!EP300#2033;3:5.0804562946674:0.0114429840539824:0.0418802148729277!ETS1#2113;3:7.29657069165175:0.0040085737751139:0.0192015519194203!GATA1#2623;3:10.1702311078503:0.00151515816849827:0.00966124940227066!GTF2B#2959;2:15.9719149671621:0.00563658572353722:0.0254696221338858!GTF2F1#2962;3:9.55474565756824:0.00182036231930478:0.0108974447017008!HDAC2#3066;3:10.0617151774697:0.0015637275447474:0.00992308549312636!HEY1#23462;4:4.04011104310571:0.0037530463691798:0.0185738714756561!HMGN3#9324;4:8.17854772335059:0.000223457028444047:0.00247824451456598!IRF1#3659;3:5.72787281517293:0.00809711479033333:0.0319984324045566!IRF4#3662;2:10.9572563433721:0.0117453018068803:0.0428275810142021!JUND#3727;3:5.24599795640327:0.0104343275174842:0.0386751865563592!MAFF#23764;2:28.1576782449726:0.00184687618036715:0.0109240471994883!MAX#4149;3:4.83941663175534:0.0131573713783684:0.0466063868330421!MEF2A#4205;3:14.057423182233:0.000583003885418661:0.00488670487875116!MYC#4609;4:5.2222818716094:0.00134430939527274:0.00886520988399882!NFKB1#4790;4:5.48806342419384:0.00110219956630198:0.0076726401722997!NFYA#4800;3:13.8191855248729:0.000613241180673451:0.00508586481921342!NR3C1#2908;3:11.2297674983798:0.00113167206806385:0.00775376888516177!PAX5#5079;4:6.66956553117783:0.000505277416948326:0.00443413731187851!RFX5#5993;4:12.0479108271951:4.74457429336527e-05:0.000825864324374626!RXRA#6256;3:15.05596285435:0.000475830799730358:0.00433754847630609!SETDB1#9869;3:30.2400196335079:5.98509618524166e-05:0.000984528997464882!SMARCB1#6598;3:13.6895368358681:0.000630578340937934:0.0051806931520781!SP1#6667;4:5.6983813781409:0.000948260606533398:0.00683379723197223!SPI1#6688;3:6.15324263139204:0.00658038711305903:0.0280957053963768!SREBF2#6721;1:109.235815602837:0.00912320148412682:0.034516139822522!SRF#6722;4:13.7971782621678:2.75840773062708e-05:0.000583641298579743!TAF1#6872;4:3.34304628574529:0.00800566489870165:0.0321652549186544!TAF7#6879;3:8.57480205369294:0.0025005543351524:0.0140285450262667!TAL1#6886;2:14.9343083387201:0.00642807757788807:0.0279434753031031!TBP#6908;4:3.70677068709639:0.00529637781478435:0.0243774361023429!TCF7L2#6934;4:10.7701765631373:7.42969445082454e-05:0.00115228669252994!USF1#7391;4:6.36149927720796:0.000610501139914083:0.00507321201078031!YY1#7528;4:4.91117074985386:0.0017187183805544:0.0106687208883638!ZBTB33#10009;3:23.7485437724859:0.000122945190881838:0.00165488758738346!ZEB1#6935;4:16.8884320175439:1.22862303393937e-05:0.000303778790344683!ZNF263#10127;4:8.22184163701068:0.000218787118095832:0.00248260623933188 | |tf_chipseq_enrich=BCLAF1#9774;2:10.8263238050609:0.0120220381643258:0.0436507316035329!BRCA1#672;3:15.1381729824178:0.000468218442143119:0.00430043671435979!CHD2#1106;4:10.3440228341169:8.73193255208051e-05:0.00128971051309113!E2F6#1876;4:5.01715573169739:0.0015780219347306:0.00995873060857629!ELF1#1997;4:4.25809795880754:0.00304152556578124:0.0160699088665264!EP300#2033;3:5.0804562946674:0.0114429840539824:0.0418802148729277!ETS1#2113;3:7.29657069165175:0.0040085737751139:0.0192015519194203!GATA1#2623;3:10.1702311078503:0.00151515816849827:0.00966124940227066!GTF2B#2959;2:15.9719149671621:0.00563658572353722:0.0254696221338858!GTF2F1#2962;3:9.55474565756824:0.00182036231930478:0.0108974447017008!HDAC2#3066;3:10.0617151774697:0.0015637275447474:0.00992308549312636!HEY1#23462;4:4.04011104310571:0.0037530463691798:0.0185738714756561!HMGN3#9324;4:8.17854772335059:0.000223457028444047:0.00247824451456598!IRF1#3659;3:5.72787281517293:0.00809711479033333:0.0319984324045566!IRF4#3662;2:10.9572563433721:0.0117453018068803:0.0428275810142021!JUND#3727;3:5.24599795640327:0.0104343275174842:0.0386751865563592!MAFF#23764;2:28.1576782449726:0.00184687618036715:0.0109240471994883!MAX#4149;3:4.83941663175534:0.0131573713783684:0.0466063868330421!MEF2A#4205;3:14.057423182233:0.000583003885418661:0.00488670487875116!MYC#4609;4:5.2222818716094:0.00134430939527274:0.00886520988399882!NFKB1#4790;4:5.48806342419384:0.00110219956630198:0.0076726401722997!NFYA#4800;3:13.8191855248729:0.000613241180673451:0.00508586481921342!NR3C1#2908;3:11.2297674983798:0.00113167206806385:0.00775376888516177!PAX5#5079;4:6.66956553117783:0.000505277416948326:0.00443413731187851!RFX5#5993;4:12.0479108271951:4.74457429336527e-05:0.000825864324374626!RXRA#6256;3:15.05596285435:0.000475830799730358:0.00433754847630609!SETDB1#9869;3:30.2400196335079:5.98509618524166e-05:0.000984528997464882!SMARCB1#6598;3:13.6895368358681:0.000630578340937934:0.0051806931520781!SP1#6667;4:5.6983813781409:0.000948260606533398:0.00683379723197223!SPI1#6688;3:6.15324263139204:0.00658038711305903:0.0280957053963768!SREBF2#6721;1:109.235815602837:0.00912320148412682:0.034516139822522!SRF#6722;4:13.7971782621678:2.75840773062708e-05:0.000583641298579743!TAF1#6872;4:3.34304628574529:0.00800566489870165:0.0321652549186544!TAF7#6879;3:8.57480205369294:0.0025005543351524:0.0140285450262667!TAL1#6886;2:14.9343083387201:0.00642807757788807:0.0279434753031031!TBP#6908;4:3.70677068709639:0.00529637781478435:0.0243774361023429!TCF7L2#6934;4:10.7701765631373:7.42969445082454e-05:0.00115228669252994!USF1#7391;4:6.36149927720796:0.000610501139914083:0.00507321201078031!YY1#7528;4:4.91117074985386:0.0017187183805544:0.0106687208883638!ZBTB33#10009;3:23.7485437724859:0.000122945190881838:0.00165488758738346!ZEB1#6935;4:16.8884320175439:1.22862303393937e-05:0.000303778790344683!ZNF263#10127;4:8.22184163701068:0.000218787118095832:0.00248260623933188 | ||
|tfbs_overrepresentation=0.191353,0.0774498,0.00177175,0.0631091,0.257053,0.363996,0.0569281,0.160638,0.043387,0.0341265,0.181435,0.288577,0.243414,0.164339,0.193153,0.0034297,0.183412,0.128744,0.0698403,0.141416,0.243245,0.172742,0.107781,0.124486,0.0550418,0.276459,0.268949,0.00739132,0.186914,0.122514,0.26347,0.149094,0.0239693,0.0394878,0.0877018,0.111013,0.204768,0.0568767,0.157159,0.0879352,0.126525,0.0326801,0.182216,0.2375,0.157881,0.0480278,0.0503649,0.234372,0.145553,0.158244,0.19996,0.0715789,0.0924421,0.12203,0.255843,0.0508907,0.140644,0.273035,0.103044,0.138225,0.0390464,0.194086,0.142115,0.0999599,0.0720888,0.0667453,0.439574,0.0792005,0.113084,0.216289,0.470097,0.0892037,0.116917,0.155921,0.00995563,0.0227583,0.126543,0.0578308,0.0493551,0.00965832,0.125428,0.290468,0.0562614,0.150119,0.368178,0.320801,0.0848546,0.268505,0.0384285,0.0827752,0.112676,0.0655645,0.12511,0.0626609,0.112199,0.150351,0.0314145,0.199405,0.121709,0.347653,0.0759036,0.350158,0.184542,0.0491142,0.280878,0.0541957,0.0883058,0.423154,0.187509,0.34189,0.23573,0.0450707,0.194256,0.0235108,0.132631,0.0447483,0.0270258,0.0748174,0.180926,0.110194,0.215858,0.275495,0.0177346,0.112709,0.134107,0.228632,0.119051,0.0196757,0.110868,0.175735,0.078637,0.0985137,0.0755515,0.0302655,0.164103,0.141472,0.085537,0.0730922,0.0438087,0.0052702,0.0302521,0.166414,0.262198,0.202388,0.00801724,0.0913381,0.129544,0.110696,0.0515825,0.157774,0.258146,0.186826,0.233377,0.0352845,0.0565357,0.153577,0.0984158,0.29227,0.0683304,0.0447121,0.291455,0.124982,0.152417,0.192028,0.0686515,0.149398,0.0530169,0.166112,0.0534404,0.392741,0.2321,0.179282,0.052046,0.0715212,0.105131,0.118265,0.182591,0.234755,0.0288935,0.0472274,0.205973,0.159869,0.0363736,0.0120302,0.0970713,0.155237,0.236268,0.0532055,0.108938,0.224443,0.140245,0.241581,0.160458,0.0477937,0.147332,0.0622664,0.102951,0.0795624,0.0891668,0.14349,0.117261,0.00326469,0.0408965,0.0799774,0.177664,0.329956,0.346995,0.197158,0.265132,0.230439,0.0606832,0.136664,0.158184,0.147626,0.0143681,0.218801,0.21271,0.132273,0.0830988,0.134907,0.184613,0.0252658,0.0220395,0.208718,0.0972471,0.165147,0.180711,0.112956,0.0797807,0.0790532,0.675167,0.000556141,0.0553945,0.10068,0.125804,0.00780206,0.0624687,0.334388,0.21183,0.0420489,0.235571,0.0204686,0.128998,0.109226,0.151958,0.178155,0.107176,0.146021,0.129196,0.15291,0.206234,0.238926,0.239646,0.128521,0.1286,0.207017,0.14037,0.259646,0.0916845,0.000209607,0.0816983,0.226367,0.211672,0.167038,0.0457509,0.106603,0.106727,0.12083,0.154253,0.0993998,0.352707,0.0834863,0.0594434,0.18736,0.113754,0.0504034,0.169684,0.327364,0.0072759,0.149583,0.0122628,0.100371,0.00966148,0.888682,0.420045,0.381628,0.332539,0.545329,0.464128,0.389374,0.594055,0.414547,0.146105,0.100406,0.271656,0.137229,0.34505,0.369161,0.500422,0.147194,0.687176,0.702495,0.241524,0.45167,0.234628,0.520726,0.143893,0.41477,0.279946,0.524104,0.467825,0.201843,0.000598342,0.632838,0.624969,0.460819,0.511459,0.0601683,0.322903,0.350886,0.380582,0.583749,0.398372,0.286293,0.606558,0.34907,0.0739876,0.395864,0.0065023,0.368633,0.547291,0.000190643,0.512763,0.369971,0.578349,0.537928,0.129952,0.683088,0.0091765,0.235444,0.00150123,0.0297312,0.279301,0.349116,0.302142,0.239545,0.432689,0.272581,0.343881,0.377117,0.606382,0.250139,0.626346,0.316925,0.356561,0.0552678,0.211506,0.0883859,0.0962508,0.238465,0.70198,0.0138092,0.6873,0.0353617,0.773224,0.651927,0.656755,0.54723,0.280307,0.393583,0.212518,0.0596868,0.0984075,0.293026,0.00320607,0.694744,0.23849,0.0799295,0.429205,0.0572193,0.0769243,0.0988815,0.00104678,0.35234,0.000464678,0.525923,0.291917,0.421082,0.25441,0.202782,0.00579711,0.517933,0.0594062,0.517001,0.620475,0.00544933,0.103882,0.188259,0.189182,0.477589,0.46699,0.546448,0.560187,0.321282,0.198207,0.0616078,0.178485,0.0615778,0.175552,0.129238,0.651295,0.370995,0.360161,0.429696,0.386216,0.385297,0.346931,0.239407,0.0778663,0.074467,0.0631823,0.447838,0.0467176,0.153861,0.513045,0.452694,0.203356,0.287542,0.265037,0.0186042,0.0543569,0.179179,0.341771,0.424526,0.290547,0.356381,0.184395,0.55524,0.624689,0.206945,0.304719,0.462531,0.296994,0.244339,0.117049,0.0786167,0.261511,0.043986,0.433821,0.64428,0.436806,0.21267,0.499072,0.744662,0.0457983,0.397546,0.0919254,0.0735469,0.248103,0.102621,0.0760107,0.187642,0.286156,0.261868,0.00833305,0.540322,0.247151,0.146385,0.0769978,0.0576261,0.382413,0.164977,0.175633,0.139918,0.34669,0.0828344,0.4729,0.0238089,0.383126,0.354433,0.142001,0.0614918,0.219485,0.149782,0.136923,0.118103,0.113892,0.207214,0.140201,0.0580534,0.00518407,0.161297,0.168389,0.270152,0.249506,0.432751,0.0660736,0.108971,0.0879235,0.235214,0.145546,0.28124,0.417003,0.251882,0.172263,0.243319,0.0637178,0.257309,0.500692,0.166608,0.227224,0.238082,0.219023,0.115115,0.124916,0.0149794,0.28498,0.140114,0.348988,0.00641248,0.224626,0.183585,0.271662,0.03989,0.171436,0.05892,0.0691994,0.268299,0.198844,0.104946,0.00852994,0.0232207,0.161213,0.118999,0.0737069,0.357807,0.621787,0.178782,0.019419,0.0866228,0.271849,0.282657,0.105411,0.0997542,0.209692,0.248936,0.0725263,0.102587,0.0742013,0.0552936,0.0457886,0.0514927,0.324236,0.220368,0.258624,0.064656,0.0277507,0.0248217,0.0438521,0.435508,0.281453,0.0522771,0.0787278,0.515487,0.159873,0.142462,0.143935,0.332403,0.0379537,0.6545,0.187953,0.051459,0.114868,0.0726892,0.18732,0.32305,0.278397,0.245002,0.170848,0.487259,0.302909,0.0757292,0.100188,0.223102,0.107653,0.235857,0.419621,0.191914,0.184022,0.216557,0.182956,0.116818,0.0139335,0.36316,0.0625685,0.124464,0.544477,0.173134,0.101893,0.142875,0.0149091,0.171311,0.458838,0.548036,0.0685131,0.130287,0.0661526,0.0815772,0.0993937,0.122878,0.187329,0.0451012,0.0976639,0.0705088,0.267945,0.000675831,0.278645,0.365775,0.155708,0.248017,0.22995,0.091341,0.0760151,0.0629459,0.486024,0.0803251,0.226641,0.379174,0.0939463,0.286748,0.0779623,0.0471607,0.163865,0.0278061,0.0464703,0.307186,0.265324,0.279778,0.141699,0.0887743,0.142302,0.0653269,0.125712,0.264432,0.0994829,0.0604041,0.144185,0.0925862,0.289561,0.199201,0.049937,0.0158721,0.0595495,0.071232,0.149346,0.121978,0.22302,0.137423,0.284016,0.0754883,0.0501465,0.100006,0.362866,0.0210009,0.251078,0.00462092,0.133127,0.0988568,0.223717,0.0189842,0.196838,0.0826805,0.246601,0.193021,0.608002,0.202165,0.0946865,0.120618,0.079499,0.18762,0.195618,0.127688,0.201169,0.220353,0.24948,0.178639,0.291976,0.320355,0.0763252,0.15547,0.110256,0.415419,0.14794,0.147307,0.0316373,0.0277041,0.124417,0.335582,0.317428,0.182843,0.130771,0.327768,0.135777,0.147842,0.0339286,0.217363,0.119015,0.114979,0.21618,0.243266,0.107021,0.238657,0.20272,0.0896967,0.61565,0.0780061,0.315336,0.028874,0.279823,0.295555,0.502112,0.369553,0.0478217,0.507599,0.170854,0.0575231,0.174063,0.163504,0.459091,0.0466753,0.502211,0.296013,0.282366,0.537932,0.459994,0.523209,0.548059,0.25423,0.490559,0.45013,0.500698,0.472542,0.685908,0.399934,0.529642,0.509113,0.14198,0.590496,0.603763,0.541914,0.627201,0.765905,0.142078,0.290703,0.622694,5.85899e-05,0.478691,0.360199,0.608176,0.0236144,0.000453758,0.365494,0.212703,0.56318,0.364079,0.680099,0.579886,0.104625,0.0537414,0.328518,0.187186,0.310552,0.594773,0.483764,2.66735e-06,0.00493585,0.209437,0.11765,0.748403,0.598945,0.169076,0.464001,0.60737,0.579004,0.870272,0.000629358,0.860705,0.0376583,0.257956,0.264245,0.379063,0.326516,0.16985,0.436016,0.475063,0.202522,0.183837,0.158557,0.126097,0.0146433,0.442469,0.212239,0.294954,0.156999,0.35974,0.667777,0.0912179,0.234254,0.357409,0.146291,0.721266,0.50338,0.620526,0.404625,0.759068,0.424691,0.357704,0.139684,0.62689,0.36666,0.642173,0.284496,0.512545,0.512178,0.201413,2.64616e-06,0.321001,0.263302,0.552023,0.180735,0.439629,0.216102,0.254659,0.109605,0.397869,0.582542,0.226491,0.417131,0.0255104,0.627953,0.503881,0.454761,0.639483,0.142363,0.452129,0.301581,0.261657,0.346776,0.131322,0.545655,0.0208637,0.349112,0.155207,0.385425,0.307816,0.461541,0.386339,0.382854,5.37257e-07,0.478745,0.24434,0.319747,0.475047,0.557967,0.608127,0.282281,0.612712,0.2536,0.246827,0.564333,0.12664,0.387134,0.050476,0.358813,0.668972,0.210703,0.493455,0.346636,0.457747,0.348802,0.476541,0.215342,0.447581,0.42505,0.254628,0.713293,0.479347,0.416962,0.632833,0.378333,1.54644e-06,0.264038,0.22798,0.102495,0.350933,0.263896,0.0446972,0.24452,0.329284,0.242783,0.0947248,0.336551,0.0239343,0.246234,0.211271,0.281295,0.267248,0.118257,0.125087,0.215123,0.0582227,0.469461,0.0597961,0.266651,0.546295,0.0292096,0.249415,0.0445044,0.285648,0.10809,0.391071,0.279553,0.25563,0.240967,0.160955,0.256687,0.0432189,0.122439,0.16188,0.23235,0.290415,0.353147,0.112422,0.170886,0.267687,0.315656,0.284866,0.0887542,0.267811,0.338547,0.147872,0.189388,0.0480552,0.210125,0.292967,0.218414,0.0509944,0.0871471,0.0689852,0.00185385,0.00888732,0.259328,0.437467,0.201057,0.15696,0.129351,0.141936,0.0786166,0.042497,0.0227344,0.282389,0.251421,0.162089,0.330223,0.387837,0.233244,0.0231432,0.327401,0.195748,0.27845,0.161712,0.237871,0.239139,0.095257,0.328852,0.332769,0.262022,0.274403,0.266687,0.184534,0.248707,0.31749,0.15156,0.0460134,0.313858,0.223773,0.25788,0.181895,0.253768,0.30702,0.202977,0.0155028,0.0604859,0.28543,0.222656,0.228479,0.127111,0.259989,0.390754,0.0725176,0.279739,0.108118,0.259901,0.139723,0.0708274,0.0710478,0.196248,0.102645,0.0539258,0.0709978,0.0944985,0.332746,0.271338,0.242121,0.0498554,0.244395,0.106889,0.128632,0.0845989,0.159153,0.0842401,0.13698,0.0874421,0.100355,0.167854,0.142846,0.0583767,0.088258,0.117657,0.0486914,0.175784,0.262778,0.373453,0.362662,0.433518,0.184359,0.334474,0.325785,0.257476,0.291176,0.376537,0.00739196,0.229571,0.359036,0.335984,0.0156657,0.208256,0.265058,0.0361085,0.362898,0.302133,0.40806,0.151361,0.279606,0.286696,0.150674,0.251128,0.0331484,0.35674,0.35852,0.318525,0.213257,0.287217,0.122782,0.410951,0.289049,0.266974,0.125746,0.112897,0.398354,0.222091,0.205977,0.34423,0.0936726,0.343425,0.132374,0.285122,0.22741,0.203996,0.0424072,0.321965,0.264707,0.450113 | |tfbs_overrepresentation=0.191353,0.0774498,0.00177175,0.0631091,0.257053,0.363996,0.0569281,0.160638,0.043387,0.0341265,0.181435,0.288577,0.243414,0.164339,0.193153,0.0034297,0.183412,0.128744,0.0698403,0.141416,0.243245,0.172742,0.107781,0.124486,0.0550418,0.276459,0.268949,0.00739132,0.186914,0.122514,0.26347,0.149094,0.0239693,0.0394878,0.0877018,0.111013,0.204768,0.0568767,0.157159,0.0879352,0.126525,0.0326801,0.182216,0.2375,0.157881,0.0480278,0.0503649,0.234372,0.145553,0.158244,0.19996,0.0715789,0.0924421,0.12203,0.255843,0.0508907,0.140644,0.273035,0.103044,0.138225,0.0390464,0.194086,0.142115,0.0999599,0.0720888,0.0667453,0.439574,0.0792005,0.113084,0.216289,0.470097,0.0892037,0.116917,0.155921,0.00995563,0.0227583,0.126543,0.0578308,0.0493551,0.00965832,0.125428,0.290468,0.0562614,0.150119,0.368178,0.320801,0.0848546,0.268505,0.0384285,0.0827752,0.112676,0.0655645,0.12511,0.0626609,0.112199,0.150351,0.0314145,0.199405,0.121709,0.347653,0.0759036,0.350158,0.184542,0.0491142,0.280878,0.0541957,0.0883058,0.423154,0.187509,0.34189,0.23573,0.0450707,0.194256,0.0235108,0.132631,0.0447483,0.0270258,0.0748174,0.180926,0.110194,0.215858,0.275495,0.0177346,0.112709,0.134107,0.228632,0.119051,0.0196757,0.110868,0.175735,0.078637,0.0985137,0.0755515,0.0302655,0.164103,0.141472,0.085537,0.0730922,0.0438087,0.0052702,0.0302521,0.166414,0.262198,0.202388,0.00801724,0.0913381,0.129544,0.110696,0.0515825,0.157774,0.258146,0.186826,0.233377,0.0352845,0.0565357,0.153577,0.0984158,0.29227,0.0683304,0.0447121,0.291455,0.124982,0.152417,0.192028,0.0686515,0.149398,0.0530169,0.166112,0.0534404,0.392741,0.2321,0.179282,0.052046,0.0715212,0.105131,0.118265,0.182591,0.234755,0.0288935,0.0472274,0.205973,0.159869,0.0363736,0.0120302,0.0970713,0.155237,0.236268,0.0532055,0.108938,0.224443,0.140245,0.241581,0.160458,0.0477937,0.147332,0.0622664,0.102951,0.0795624,0.0891668,0.14349,0.117261,0.00326469,0.0408965,0.0799774,0.177664,0.329956,0.346995,0.197158,0.265132,0.230439,0.0606832,0.136664,0.158184,0.147626,0.0143681,0.218801,0.21271,0.132273,0.0830988,0.134907,0.184613,0.0252658,0.0220395,0.208718,0.0972471,0.165147,0.180711,0.112956,0.0797807,0.0790532,0.675167,0.000556141,0.0553945,0.10068,0.125804,0.00780206,0.0624687,0.334388,0.21183,0.0420489,0.235571,0.0204686,0.128998,0.109226,0.151958,0.178155,0.107176,0.146021,0.129196,0.15291,0.206234,0.238926,0.239646,0.128521,0.1286,0.207017,0.14037,0.259646,0.0916845,0.000209607,0.0816983,0.226367,0.211672,0.167038,0.0457509,0.106603,0.106727,0.12083,0.154253,0.0993998,0.352707,0.0834863,0.0594434,0.18736,0.113754,0.0504034,0.169684,0.327364,0.0072759,0.149583,0.0122628,0.100371,0.00966148,0.888682,0.420045,0.381628,0.332539,0.545329,0.464128,0.389374,0.594055,0.414547,0.146105,0.100406,0.271656,0.137229,0.34505,0.369161,0.500422,0.147194,0.687176,0.702495,0.241524,0.45167,0.234628,0.520726,0.143893,0.41477,0.279946,0.524104,0.467825,0.201843,0.000598342,0.632838,0.624969,0.460819,0.511459,0.0601683,0.322903,0.350886,0.380582,0.583749,0.398372,0.286293,0.606558,0.34907,0.0739876,0.395864,0.0065023,0.368633,0.547291,0.000190643,0.512763,0.369971,0.578349,0.537928,0.129952,0.683088,0.0091765,0.235444,0.00150123,0.0297312,0.279301,0.349116,0.302142,0.239545,0.432689,0.272581,0.343881,0.377117,0.606382,0.250139,0.626346,0.316925,0.356561,0.0552678,0.211506,0.0883859,0.0962508,0.238465,0.70198,0.0138092,0.6873,0.0353617,0.773224,0.651927,0.656755,0.54723,0.280307,0.393583,0.212518,0.0596868,0.0984075,0.293026,0.00320607,0.694744,0.23849,0.0799295,0.429205,0.0572193,0.0769243,0.0988815,0.00104678,0.35234,0.000464678,0.525923,0.291917,0.421082,0.25441,0.202782,0.00579711,0.517933,0.0594062,0.517001,0.620475,0.00544933,0.103882,0.188259,0.189182,0.477589,0.46699,0.546448,0.560187,0.321282,0.198207,0.0616078,0.178485,0.0615778,0.175552,0.129238,0.651295,0.370995,0.360161,0.429696,0.386216,0.385297,0.346931,0.239407,0.0778663,0.074467,0.0631823,0.447838,0.0467176,0.153861,0.513045,0.452694,0.203356,0.287542,0.265037,0.0186042,0.0543569,0.179179,0.341771,0.424526,0.290547,0.356381,0.184395,0.55524,0.624689,0.206945,0.304719,0.462531,0.296994,0.244339,0.117049,0.0786167,0.261511,0.043986,0.433821,0.64428,0.436806,0.21267,0.499072,0.744662,0.0457983,0.397546,0.0919254,0.0735469,0.248103,0.102621,0.0760107,0.187642,0.286156,0.261868,0.00833305,0.540322,0.247151,0.146385,0.0769978,0.0576261,0.382413,0.164977,0.175633,0.139918,0.34669,0.0828344,0.4729,0.0238089,0.383126,0.354433,0.142001,0.0614918,0.219485,0.149782,0.136923,0.118103,0.113892,0.207214,0.140201,0.0580534,0.00518407,0.161297,0.168389,0.270152,0.249506,0.432751,0.0660736,0.108971,0.0879235,0.235214,0.145546,0.28124,0.417003,0.251882,0.172263,0.243319,0.0637178,0.257309,0.500692,0.166608,0.227224,0.238082,0.219023,0.115115,0.124916,0.0149794,0.28498,0.140114,0.348988,0.00641248,0.224626,0.183585,0.271662,0.03989,0.171436,0.05892,0.0691994,0.268299,0.198844,0.104946,0.00852994,0.0232207,0.161213,0.118999,0.0737069,0.357807,0.621787,0.178782,0.019419,0.0866228,0.271849,0.282657,0.105411,0.0997542,0.209692,0.248936,0.0725263,0.102587,0.0742013,0.0552936,0.0457886,0.0514927,0.324236,0.220368,0.258624,0.064656,0.0277507,0.0248217,0.0438521,0.435508,0.281453,0.0522771,0.0787278,0.515487,0.159873,0.142462,0.143935,0.332403,0.0379537,0.6545,0.187953,0.051459,0.114868,0.0726892,0.18732,0.32305,0.278397,0.245002,0.170848,0.487259,0.302909,0.0757292,0.100188,0.223102,0.107653,0.235857,0.419621,0.191914,0.184022,0.216557,0.182956,0.116818,0.0139335,0.36316,0.0625685,0.124464,0.544477,0.173134,0.101893,0.142875,0.0149091,0.171311,0.458838,0.548036,0.0685131,0.130287,0.0661526,0.0815772,0.0993937,0.122878,0.187329,0.0451012,0.0976639,0.0705088,0.267945,0.000675831,0.278645,0.365775,0.155708,0.248017,0.22995,0.091341,0.0760151,0.0629459,0.486024,0.0803251,0.226641,0.379174,0.0939463,0.286748,0.0779623,0.0471607,0.163865,0.0278061,0.0464703,0.307186,0.265324,0.279778,0.141699,0.0887743,0.142302,0.0653269,0.125712,0.264432,0.0994829,0.0604041,0.144185,0.0925862,0.289561,0.199201,0.049937,0.0158721,0.0595495,0.071232,0.149346,0.121978,0.22302,0.137423,0.284016,0.0754883,0.0501465,0.100006,0.362866,0.0210009,0.251078,0.00462092,0.133127,0.0988568,0.223717,0.0189842,0.196838,0.0826805,0.246601,0.193021,0.608002,0.202165,0.0946865,0.120618,0.079499,0.18762,0.195618,0.127688,0.201169,0.220353,0.24948,0.178639,0.291976,0.320355,0.0763252,0.15547,0.110256,0.415419,0.14794,0.147307,0.0316373,0.0277041,0.124417,0.335582,0.317428,0.182843,0.130771,0.327768,0.135777,0.147842,0.0339286,0.217363,0.119015,0.114979,0.21618,0.243266,0.107021,0.238657,0.20272,0.0896967,0.61565,0.0780061,0.315336,0.028874,0.279823,0.295555,0.502112,0.369553,0.0478217,0.507599,0.170854,0.0575231,0.174063,0.163504,0.459091,0.0466753,0.502211,0.296013,0.282366,0.537932,0.459994,0.523209,0.548059,0.25423,0.490559,0.45013,0.500698,0.472542,0.685908,0.399934,0.529642,0.509113,0.14198,0.590496,0.603763,0.541914,0.627201,0.765905,0.142078,0.290703,0.622694,5.85899e-05,0.478691,0.360199,0.608176,0.0236144,0.000453758,0.365494,0.212703,0.56318,0.364079,0.680099,0.579886,0.104625,0.0537414,0.328518,0.187186,0.310552,0.594773,0.483764,2.66735e-06,0.00493585,0.209437,0.11765,0.748403,0.598945,0.169076,0.464001,0.60737,0.579004,0.870272,0.000629358,0.860705,0.0376583,0.257956,0.264245,0.379063,0.326516,0.16985,0.436016,0.475063,0.202522,0.183837,0.158557,0.126097,0.0146433,0.442469,0.212239,0.294954,0.156999,0.35974,0.667777,0.0912179,0.234254,0.357409,0.146291,0.721266,0.50338,0.620526,0.404625,0.759068,0.424691,0.357704,0.139684,0.62689,0.36666,0.642173,0.284496,0.512545,0.512178,0.201413,2.64616e-06,0.321001,0.263302,0.552023,0.180735,0.439629,0.216102,0.254659,0.109605,0.397869,0.582542,0.226491,0.417131,0.0255104,0.627953,0.503881,0.454761,0.639483,0.142363,0.452129,0.301581,0.261657,0.346776,0.131322,0.545655,0.0208637,0.349112,0.155207,0.385425,0.307816,0.461541,0.386339,0.382854,5.37257e-07,0.478745,0.24434,0.319747,0.475047,0.557967,0.608127,0.282281,0.612712,0.2536,0.246827,0.564333,0.12664,0.387134,0.050476,0.358813,0.668972,0.210703,0.493455,0.346636,0.457747,0.348802,0.476541,0.215342,0.447581,0.42505,0.254628,0.713293,0.479347,0.416962,0.632833,0.378333,1.54644e-06,0.264038,0.22798,0.102495,0.350933,0.263896,0.0446972,0.24452,0.329284,0.242783,0.0947248,0.336551,0.0239343,0.246234,0.211271,0.281295,0.267248,0.118257,0.125087,0.215123,0.0582227,0.469461,0.0597961,0.266651,0.546295,0.0292096,0.249415,0.0445044,0.285648,0.10809,0.391071,0.279553,0.25563,0.240967,0.160955,0.256687,0.0432189,0.122439,0.16188,0.23235,0.290415,0.353147,0.112422,0.170886,0.267687,0.315656,0.284866,0.0887542,0.267811,0.338547,0.147872,0.189388,0.0480552,0.210125,0.292967,0.218414,0.0509944,0.0871471,0.0689852,0.00185385,0.00888732,0.259328,0.437467,0.201057,0.15696,0.129351,0.141936,0.0786166,0.042497,0.0227344,0.282389,0.251421,0.162089,0.330223,0.387837,0.233244,0.0231432,0.327401,0.195748,0.27845,0.161712,0.237871,0.239139,0.095257,0.328852,0.332769,0.262022,0.274403,0.266687,0.184534,0.248707,0.31749,0.15156,0.0460134,0.313858,0.223773,0.25788,0.181895,0.253768,0.30702,0.202977,0.0155028,0.0604859,0.28543,0.222656,0.228479,0.127111,0.259989,0.390754,0.0725176,0.279739,0.108118,0.259901,0.139723,0.0708274,0.0710478,0.196248,0.102645,0.0539258,0.0709978,0.0944985,0.332746,0.271338,0.242121,0.0498554,0.244395,0.106889,0.128632,0.0845989,0.159153,0.0842401,0.13698,0.0874421,0.100355,0.167854,0.142846,0.0583767,0.088258,0.117657,0.0486914,0.175784,0.262778,0.373453,0.362662,0.433518,0.184359,0.334474,0.325785,0.257476,0.291176,0.376537,0.00739196,0.229571,0.359036,0.335984,0.0156657,0.208256,0.265058,0.0361085,0.362898,0.302133,0.40806,0.151361,0.279606,0.286696,0.150674,0.251128,0.0331484,0.35674,0.35852,0.318525,0.213257,0.287217,0.122782,0.410951,0.289049,0.266974,0.125746,0.112897,0.398354,0.222091,0.205977,0.34423,0.0936726,0.343425,0.132374,0.285122,0.22741,0.203996,0.0424072,0.321965,0.264707,0.450113 | ||
}} | }} | ||
Revision as of 13:51, 19 October 2012
Full id: C2306_CD4_CD8_cerebellum_Mast_Neural_thymus_Natural
Phase1 CAGE Peaks
| Hg19::chr14:64108537..64108597,- | p1@WDR89 |
| Hg19::chr2:120517452..120517509,+ | p1@PTPN4 |
| Hg19::chr2:120517517..120517541,+ | p2@PTPN4 |
| Hg19::chr2:242041691..242041740,- | p1@MTERFD2 |
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
No results for this coexpression
Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data
| GO ID | GO name | FDR corrected p-value |
|---|---|---|
| GO:0004726 | non-membrane spanning protein tyrosine phosphatase activity | 0.00927234192864712 |
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>
| Ontology term | p-value | n |
|---|---|---|
| nucleate cell | 1.15e-21 | 55 |
| lymphocyte | 5.63e-21 | 53 |
| common lymphoid progenitor | 5.63e-21 | 53 |
| lymphoid lineage restricted progenitor cell | 1.62e-20 | 52 |
| mature alpha-beta T cell | 1.89e-12 | 18 |
| alpha-beta T cell | 1.89e-12 | 18 |
| immature T cell | 1.89e-12 | 18 |
| mature T cell | 1.89e-12 | 18 |
| immature alpha-beta T cell | 1.89e-12 | 18 |
| T cell | 6.77e-12 | 25 |
| pro-T cell | 6.77e-12 | 25 |
| CD8-positive, alpha-beta T cell | 1.68e-08 | 11 |
| lymphocyte of B lineage | 2.57e-08 | 24 |
| pro-B cell | 2.57e-08 | 24 |
| B cell | 1.58e-07 | 14 |
| Ontology term | p-value | n |
|---|---|---|
| adult organism | 4.46e-22 | 114 |
| central nervous system | 1.48e-13 | 81 |
| nervous system | 1.72e-12 | 89 |
| neural tube | 1.55e-11 | 56 |
| neural rod | 1.55e-11 | 56 |
| future spinal cord | 1.55e-11 | 56 |
| neural keel | 1.55e-11 | 56 |
| regional part of nervous system | 2.47e-11 | 53 |
| regional part of brain | 2.47e-11 | 53 |
| regional part of forebrain | 3.12e-11 | 41 |
| forebrain | 3.12e-11 | 41 |
| anterior neural tube | 3.12e-11 | 41 |
| future forebrain | 3.12e-11 | 41 |
| brain | 3.47e-10 | 68 |
| future brain | 3.47e-10 | 68 |
| telencephalon | 5.90e-09 | 34 |
| organ system subdivision | 1.37e-08 | 223 |
| brain grey matter | 1.39e-08 | 34 |
| gray matter | 1.39e-08 | 34 |
| regional part of telencephalon | 2.35e-08 | 32 |
| cerebral hemisphere | 2.44e-08 | 32 |
| blood | 3.44e-07 | 15 |
| haemolymphatic fluid | 3.44e-07 | 15 |
| organism substance | 3.44e-07 | 15 |
| cerebral cortex | 7.95e-07 | 25 |
| pallium | 7.95e-07 | 25 |
Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
| Motifs | -log10(p-value) |
|---|---|
|
{{{tfbs_overrepresentation_jaspar}}} |
ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data
(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)
| TF | #promoters | Enrichment | p-value | q-value |
|---|---|---|---|---|
| BCLAF1#9774 | 2 | 10.8263238050609 | 0.0120220381643258 | 0.0436507316035329 |
| BRCA1#672 | 3 | 15.1381729824178 | 0.000468218442143119 | 0.00430043671435979 |
| CHD2#1106 | 4 | 10.3440228341169 | 8.73193255208051e-05 | 0.00128971051309113 |
| E2F6#1876 | 4 | 5.01715573169739 | 0.0015780219347306 | 0.00995873060857629 |
| ELF1#1997 | 4 | 4.25809795880754 | 0.00304152556578124 | 0.0160699088665264 |
| EP300#2033 | 3 | 5.0804562946674 | 0.0114429840539824 | 0.0418802148729277 |
| ETS1#2113 | 3 | 7.29657069165175 | 0.0040085737751139 | 0.0192015519194203 |
| GATA1#2623 | 3 | 10.1702311078503 | 0.00151515816849827 | 0.00966124940227066 |
| GTF2B#2959 | 2 | 15.9719149671621 | 0.00563658572353722 | 0.0254696221338858 |
| GTF2F1#2962 | 3 | 9.55474565756824 | 0.00182036231930478 | 0.0108974447017008 |
| HDAC2#3066 | 3 | 10.0617151774697 | 0.0015637275447474 | 0.00992308549312636 |
| HEY1#23462 | 4 | 4.04011104310571 | 0.0037530463691798 | 0.0185738714756561 |
| HMGN3#9324 | 4 | 8.17854772335059 | 0.000223457028444047 | 0.00247824451456598 |
| IRF1#3659 | 3 | 5.72787281517293 | 0.00809711479033333 | 0.0319984324045566 |
| IRF4#3662 | 2 | 10.9572563433721 | 0.0117453018068803 | 0.0428275810142021 |
| JUND#3727 | 3 | 5.24599795640327 | 0.0104343275174842 | 0.0386751865563592 |
| MAFF#23764 | 2 | 28.1576782449726 | 0.00184687618036715 | 0.0109240471994883 |
| MAX#4149 | 3 | 4.83941663175534 | 0.0131573713783684 | 0.0466063868330421 |
| MEF2A#4205 | 3 | 14.057423182233 | 0.000583003885418661 | 0.00488670487875116 |
| MYC#4609 | 4 | 5.2222818716094 | 0.00134430939527274 | 0.00886520988399882 |
| NFKB1#4790 | 4 | 5.48806342419384 | 0.00110219956630198 | 0.0076726401722997 |
| NFYA#4800 | 3 | 13.8191855248729 | 0.000613241180673451 | 0.00508586481921342 |
| NR3C1#2908 | 3 | 11.2297674983798 | 0.00113167206806385 | 0.00775376888516177 |
| PAX5#5079 | 4 | 6.66956553117783 | 0.000505277416948326 | 0.00443413731187851 |
| RFX5#5993 | 4 | 12.0479108271951 | 4.74457429336527e-05 | 0.000825864324374626 |
| RXRA#6256 | 3 | 15.05596285435 | 0.000475830799730358 | 0.00433754847630609 |
| SETDB1#9869 | 3 | 30.2400196335079 | 5.98509618524166e-05 | 0.000984528997464882 |
| SMARCB1#6598 | 3 | 13.6895368358681 | 0.000630578340937934 | 0.0051806931520781 |
| SP1#6667 | 4 | 5.6983813781409 | 0.000948260606533398 | 0.00683379723197223 |
| SPI1#6688 | 3 | 6.15324263139204 | 0.00658038711305903 | 0.0280957053963768 |
| SREBF2#6721 | 1 | 109.235815602837 | 0.00912320148412682 | 0.034516139822522 |
| SRF#6722 | 4 | 13.7971782621678 | 2.75840773062708e-05 | 0.000583641298579743 |
| TAF1#6872 | 4 | 3.34304628574529 | 0.00800566489870165 | 0.0321652549186544 |
| TAF7#6879 | 3 | 8.57480205369294 | 0.0025005543351524 | 0.0140285450262667 |
| TAL1#6886 | 2 | 14.9343083387201 | 0.00642807757788807 | 0.0279434753031031 |
| TBP#6908 | 4 | 3.70677068709639 | 0.00529637781478435 | 0.0243774361023429 |
| TCF7L2#6934 | 4 | 10.7701765631373 | 7.42969445082454e-05 | 0.00115228669252994 |
| USF1#7391 | 4 | 6.36149927720796 | 0.000610501139914083 | 0.00507321201078031 |
| YY1#7528 | 4 | 4.91117074985386 | 0.0017187183805544 | 0.0106687208883638 |
| ZBTB33#10009 | 3 | 23.7485437724859 | 0.000122945190881838 | 0.00165488758738346 |
| ZEB1#6935 | 4 | 16.8884320175439 | 1.22862303393937e-05 | 0.000303778790344683 |
| ZNF263#10127 | 4 | 8.22184163701068 | 0.000218787118095832 | 0.00248260623933188 |
Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data
This analysis result is provided for C0 - C305 clusters.
