FFCP PHASE1:Hg19::chr12:54807164..54807220,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3678|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6141|TSSclassifier=S|UniProt=|association_with_transcript=0bp_to_ENST00000547744_5end|coexpression_cluster_id=C0|description=CAGE_peak_4_at_ITGA5_5end|id=chr12:54807164..54807220,-|ontology_enrichment_celltype=CL:0000037!8.87e-46!172;CL:0000566!8.87e-46!172;CL:0000738!8.92e-44!140;CL:0000988!5.65e-43!182;CL:0002032!2.42e-42!165;CL:0000837!2.42e-42!165;CL:0000766!1.60e-36!76;CL:0000763!2.87e-35!112;CL:0000049!2.87e-35!112;CL:0002031!4.52e-35!124;CL:0002057!9.14e-35!42;CL:0002087!3.09e-34!119;CL:0000860!5.12e-31!45;CL:0000557!4.74e-30!71;CL:0002009!1.64e-28!65;CL:0000839!3.68e-28!70;CL:0002194!2.12e-27!63;CL:0000576!2.12e-27!63;CL:0000040!2.12e-27!63;CL:0000559!2.12e-27!63;CL:0000134!3.23e-13!358;CL:0000791!7.63e-13!18;CL:0000789!7.63e-13!18;CL:0002420!7.63e-13!18;CL:0002419!7.63e-13!18;CL:0000790!7.63e-13!18;CL:0002320!4.28e-12!365;CL:0000084!2.61e-10!25;CL:0000827!2.61e-10!25;CL:0000219!7.21e-09!390;CL:0000625!9.85e-09!11;CL:0000094!1.73e-08!8;CL:0000838!1.29e-07!52;CL:0000542!2.80e-07!53;CL:0000051!2.80e-07!53;CL:0000071!6.26e-07!18;CL:0002546!6.26e-07!18;CL:0002393!8.65e-07!9;CL:0002397!8.65e-07!9|ontology_enrichment_celltype_v019=CL:0000860;7.90e-48;33!CL:0002057;7.90e-48;33!CL:0000576;2.85e-33;48!CL:0000473;2.38e-32;39!CL:0000234;2.38e-32;39!CL:0000766;5.36e-25;69!CL:0000791;2.31e-20;18!CL:0000789;2.31e-20;18!CL:0002419;2.31e-20;18!CL:0002087;6.17e-17;104!CL:0000084;9.62e-17;25!CL:0000625;1.77e-14;11!CL:0000763;3.26e-14;100!CL:0000094;3.59e-14;8!CL:0000738;6.49e-12;136!CL:0000081;9.44e-10;11!CL:0000988;1.65e-09;177!CL:0002393;5.21e-09;6!CL:0002397;5.21e-09;6!CL:0000624;5.25e-09;6!CL:1000413;7.17e-08;9|ontology_enrichment_celltype_v019_2=CL:0000738,1.28e-60,136;CL:0000860,1.27e-57,42;CL:0002057,1.27e-57,42;CL:0000037,2.37e-55,168;CL:0000766,8.06e-53,72;CL:0000988,3.52e-51,177;CL:0002032,7.73e-51,161;CL:0000837,7.73e-51,161;CL:0000473,1.37e-48,48;CL:0000234,1.37e-48,48;CL:0002087,6.98e-48,115;CL:0002031,1.52e-47,120;CL:0000557,3.67e-42,67;CL:0000763,9.25e-42,108;CL:0000049,9.25e-42,108;CL:0002009,1.32e-41,61;CL:0002194,1.23e-39,59;CL:0000576,1.23e-39,59;CL:0000040,1.23e-39,59;CL:0000559,1.23e-39,59;CL:0000839,2.26e-39,66;CL:0000791,1.58e-20,18;CL:0000789,1.58e-20,18;CL:0002420,1.58e-20,18;CL:0002419,1.58e-20,18;CL:0000790,1.58e-20,18;CL:0000084,7.43e-17,25;CL:0000827,7.43e-17,25;CL:0000625,1.29e-14,11;CL:0000134,1.37e-14,354;CL:0000094,3.61e-14,8;CL:0002320,7.74e-14,361;CL:0000219,3.14e-11,386;CL:0000081,9.47e-10,11;CL:0000838,3.26e-09,52;CL:0000624,4.81e-09,6;CL:0000542,6.32e-09,53;CL:0000051,6.32e-09,53;CL:0000048,3.75e-08,427;CL:0000034,4.34e-08,441;CL:1000413,6.42e-08,9;CL:0000723,9.68e-08,433;CL:0002393,1.67e-07,9;CL:0002397,1.67e-07,9|ontology_enrichment_development_v019=CL:0002057;8.31e-42;42!CL:0000790;2.31e-20;18!CL:0000049;5.46e-12;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!2.67e-36!102;UBERON:0003061!2.67e-36!102;UBERON:0002193!5.92e-35!112;UBERON:0002371!7.91e-26!80;UBERON:0001474!2.95e-22!86;UBERON:0002405!1.14e-21!115;UBERON:0003081!9.13e-19!216;UBERON:0004765!1.22e-16!101;UBERON:0001434!1.22e-16!101;UBERON:0002384!1.32e-10!375;UBERON:0000178!2.49e-09!15;UBERON:0000179!2.49e-09!15;UBERON:0000463!2.49e-09!15;UBERON:0001986!6.26e-07!18;UBERON:0004638!6.26e-07!18;UBERON:0004852!6.26e-07!18|ontology_enrichment_uberon_v019=UBERON:0000178;3.50e-13;15!UBERON:0000179;3.50e-13;15!UBERON:0000463;3.50e-13;15!UBERON:0003915;7.17e-08;9!UBERON:0004700;7.17e-08;9!UBERON:0001917;7.17e-08;9|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.06e-49,98;UBERON:0003061,1.06e-49,98;UBERON:0002193,6.96e-45,108;UBERON:0002371,4.41e-37,76;UBERON:0001474,3.10e-33,82;UBERON:0002405,3.82e-33,93;UBERON:0004765,6.45e-29,90;UBERON:0001434,1.63e-24,100;UBERON:0003081,3.84e-23,203;UBERON:0000178,3.66e-13,15;UBERON:0000179,3.66e-13,15;UBERON:0000463,3.66e-13,15;UBERON:0002384,8.06e-13,371;UBERON:0002204,1.01e-09,167;UBERON:0000926,2.15e-08,315;UBERON:0004120,2.15e-08,315;UBERON:0006603,2.15e-08,315;UBERON:0003915,6.42e-08,9;UBERON:0004700,6.42e-08,9;UBERON:0001917,6.42e-08,9|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0.602694528023977,0,0,0,0,0,0,0,0,0.0764134057479513,0.246301768349837,0,77.886126816083,52.9684569374154,61.15236870985,0,0,0,0,0.142169232487422,2.93600439334847,28.8077612436576,30.4827560154615,22.1351088130169,0,1.6194683300949,0.77272670290256,36.0587632173321,50.2575005106117,39.2986179124262,43.2318008644573,55.5076648829465,78.9751245782514,35.0984718633024,60.1977660343386,70.4717045067984,71.7071015932167,89.7223710181518,102.9241298117,41.9780417180008,42.8462655590818,40.0007802312251,57.8498556581006,64.8276634693709,76.7204550958849,26.0582527147506,51.6610873240027,39.6389017995406,41.2097118852589,55.0363667950406,49.825779919646,69.3446316108611,95.43137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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3678 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6141 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000547744_5end | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_4_at_ITGA5_5end | |||
|id=chr12:54807164..54807220,- | |||
|ontology_enrichment_celltype=CL:0000037!8.87e-46!172;CL:0000566!8.87e-46!172;CL:0000738!8.92e-44!140;CL:0000988!5.65e-43!182;CL:0002032!2.42e-42!165;CL:0000837!2.42e-42!165;CL:0000766!1.60e-36!76;CL:0000763!2.87e-35!112;CL:0000049!2.87e-35!112;CL:0002031!4.52e-35!124;CL:0002057!9.14e-35!42;CL:0002087!3.09e-34!119;CL:0000860!5.12e-31!45;CL:0000557!4.74e-30!71;CL:0002009!1.64e-28!65;CL:0000839!3.68e-28!70;CL:0002194!2.12e-27!63;CL:0000576!2.12e-27!63;CL:0000040!2.12e-27!63;CL:0000559!2.12e-27!63;CL:0000134!3.23e-13!358;CL:0000791!7.63e-13!18;CL:0000789!7.63e-13!18;CL:0002420!7.63e-13!18;CL:0002419!7.63e-13!18;CL:0000790!7.63e-13!18;CL:0002320!4.28e-12!365;CL:0000084!2.61e-10!25;CL:0000827!2.61e-10!25;CL:0000219!7.21e-09!390;CL:0000625!9.85e-09!11;CL:0000094!1.73e-08!8;CL:0000838!1.29e-07!52;CL:0000542!2.80e-07!53;CL:0000051!2.80e-07!53;CL:0000071!6.26e-07!18;CL:0002546!6.26e-07!18;CL:0002393!8.65e-07!9;CL:0002397!8.65e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000860;7.90e-48;33!CL:0002057;7.90e-48;33!CL:0000576;2.85e-33;48!CL:0000473;2.38e-32;39!CL:0000234;2.38e-32;39!CL:0000766;5.36e-25;69!CL:0000791;2.31e-20;18!CL:0000789;2.31e-20;18!CL:0002419;2.31e-20;18!CL:0002087;6.17e-17;104!CL:0000084;9.62e-17;25!CL:0000625;1.77e-14;11!CL:0000763;3.26e-14;100!CL:0000094;3.59e-14;8!CL:0000738;6.49e-12;136!CL:0000081;9.44e-10;11!CL:0000988;1.65e-09;177!CL:0002393;5.21e-09;6!CL:0002397;5.21e-09;6!CL:0000624;5.25e-09;6!CL:1000413;7.17e-08;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,1.28e-60,136;CL:0000860,1.27e-57,42;CL:0002057,1.27e-57,42;CL:0000037,2.37e-55,168;CL:0000766,8.06e-53,72;CL:0000988,3.52e-51,177;CL:0002032,7.73e-51,161;CL:0000837,7.73e-51,161;CL:0000473,1.37e-48,48;CL:0000234,1.37e-48,48;CL:0002087,6.98e-48,115;CL:0002031,1.52e-47,120;CL:0000557,3.67e-42,67;CL:0000763,9.25e-42,108;CL:0000049,9.25e-42,108;CL:0002009,1.32e-41,61;CL:0002194,1.23e-39,59;CL:0000576,1.23e-39,59;CL:0000040,1.23e-39,59;CL:0000559,1.23e-39,59;CL:0000839,2.26e-39,66;CL:0000791,1.58e-20,18;CL:0000789,1.58e-20,18;CL:0002420,1.58e-20,18;CL:0002419,1.58e-20,18;CL:0000790,1.58e-20,18;CL:0000084,7.43e-17,25;CL:0000827,7.43e-17,25;CL:0000625,1.29e-14,11;CL:0000134,1.37e-14,354;CL:0000094,3.61e-14,8;CL:0002320,7.74e-14,361;CL:0000219,3.14e-11,386;CL:0000081,9.47e-10,11;CL:0000838,3.26e-09,52;CL:0000624,4.81e-09,6;CL:0000542,6.32e-09,53;CL:0000051,6.32e-09,53;CL:0000048,3.75e-08,427;CL:0000034,4.34e-08,441;CL:1000413,6.42e-08,9;CL:0000723,9.68e-08,433;CL:0002393,1.67e-07,9;CL:0002397,1.67e-07,9 | |||
|ontology_enrichment_development_v019=CL:0002057;8.31e-42;42!CL:0000790;2.31e-20;18!CL:0000049;5.46e-12;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.67e-36!102;UBERON:0003061!2.67e-36!102;UBERON:0002193!5.92e-35!112;UBERON:0002371!7.91e-26!80;UBERON:0001474!2.95e-22!86;UBERON:0002405!1.14e-21!115;UBERON:0003081!9.13e-19!216;UBERON:0004765!1.22e-16!101;UBERON:0001434!1.22e-16!101;UBERON:0002384!1.32e-10!375;UBERON:0000178!2.49e-09!15;UBERON:0000179!2.49e-09!15;UBERON:0000463!2.49e-09!15;UBERON:0001986!6.26e-07!18;UBERON:0004638!6.26e-07!18;UBERON:0004852!6.26e-07!18 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.50e-13;15!UBERON:0000179;3.50e-13;15!UBERON:0000463;3.50e-13;15!UBERON:0003915;7.17e-08;9!UBERON:0004700;7.17e-08;9!UBERON:0001917;7.17e-08;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.06e-49,98;UBERON:0003061,1.06e-49,98;UBERON:0002193,6.96e-45,108;UBERON:0002371,4.41e-37,76;UBERON:0001474,3.10e-33,82;UBERON:0002405,3.82e-33,93;UBERON:0004765,6.45e-29,90;UBERON:0001434,1.63e-24,100;UBERON:0003081,3.84e-23,203;UBERON:0000178,3.66e-13,15;UBERON:0000179,3.66e-13,15;UBERON:0000463,3.66e-13,15;UBERON:0002384,8.06e-13,371;UBERON:0002204,1.01e-09,167;UBERON:0000926,2.15e-08,315;UBERON:0004120,2.15e-08,315;UBERON:0006603,2.15e-08,315;UBERON:0003915,6.42e-08,9;UBERON:0004700,6.42e-08,9;UBERON:0001917,6.42e-08,9 | |||
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| |||
|short_description=p4@ITGA5 | |||
}} |
Revision as of 23:23, 10 September 2013
Short description: | p4@ITGA5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_ITGA5_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | 0bp_to_ENST00000547744_5end |
EntrezGene: | ITGA5 |
HGNC: | 6141 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.06e-49 | 98 |
blood island | 1.06e-49 | 98 |
hemolymphoid system | 6.96e-45 | 108 |
bone marrow | 4.41e-37 | 76 |
bone element | 3.10e-33 | 82 |
immune system | 3.82e-33 | 93 |
skeletal element | 6.45e-29 | 90 |
skeletal system | 1.63e-24 | 100 |
lateral plate mesoderm | 3.84e-23 | 203 |
blood | 3.66e-13 | 15 |
haemolymphatic fluid | 3.66e-13 | 15 |
organism substance | 3.66e-13 | 15 |
connective tissue | 8.06e-13 | 371 |
musculoskeletal system | 1.01e-09 | 167 |
mesoderm | 2.15e-08 | 315 |
mesoderm-derived structure | 2.15e-08 | 315 |
presumptive mesoderm | 2.15e-08 | 315 |
endothelial tube | 6.42e-08 | 9 |
arterial system endothelium | 6.42e-08 | 9 |
endothelium of artery | 6.42e-08 | 9 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.