FFCP PHASE1:Hg19::chr13:112721457..112721482,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=6656|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=11189|TSSclassifier=W|UniProt=O00570|association_with_transcript=-430bp_to_ENST00000330949,NM_005986,uc001vsb.1_5end|coexpression_cluster_id=C152|description=CAGE_peak_1_at_SOX1_5end|id=chr13:112721457..112721482,+|ontology_enrichment_celltype=CL:0000128!1.02e-11!7;CL:0000126!1.02e-11!7;CL:0000127!1.02e-11!7;CL:0002453!1.02e-11!7;CL:0002319!1.33e-10!25;CL:0002605!1.39e-08!3;CL:0000047!4.20e-08!8;CL:0000133!4.61e-07!59;CL:0002603!6.08e-07!3|ontology_enrichment_celltype_v019=CL:0002605;7.02e-20;3!CL:0002319;5.57e-18;25!CL:0000047;2.53e-14;2!CL:0000540;3.32e-10;6!CL:0000404;3.32e-10;6!CL:0000128;8.20e-09;7!CL:0000126;8.20e-09;7!CL:0000127;8.20e-09;7|ontology_enrichment_celltype_v019_2=CL:0000047,3.97e-20,8;CL:0002605,6.81e-20,3;CL:0002319,5.99e-18,25;CL:0000540,3.71e-10,6;CL:0000031,3.71e-10,6;CL:0000404,3.71e-10,6;CL:0000128,8.09e-09,7;CL:0000126,8.09e-09,7;CL:0000127,8.09e-09,7;CL:0002453,8.09e-09,7;CL:0000133,8.29e-09,59;CL:0000221,5.85e-07,72|ontology_enrichment_development_v019=CL:0000031;3.32e-10;6!UBERON:0006222;2.17e-07;1|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!5.50e-76!57;UBERON:0005068!5.50e-76!57;UBERON:0006241!5.50e-76!57;UBERON:0007135!5.50e-76!57;UBERON:0001017!1.37e-73!82;UBERON:0005743!2.83e-72!86;UBERON:0000073!4.50e-64!94;UBERON:0001016!4.50e-64!94;UBERON:0002616!4.76e-63!59;UBERON:0000955!8.78e-60!69;UBERON:0006238!8.78e-60!69;UBERON:0002346!2.81e-58!90;UBERON:0001893!1.16e-57!34;UBERON:0002020!2.92e-57!34;UBERON:0003528!2.92e-57!34;UBERON:0002791!1.15e-55!33;UBERON:0001869!1.12e-53!32;UBERON:0003075!3.04e-53!86;UBERON:0007284!3.04e-53!86;UBERON:0002780!5.32e-53!41;UBERON:0001890!5.32e-53!41;UBERON:0006240!5.32e-53!41;UBERON:0003080!1.57e-51!42;UBERON:0000956!1.08e-39!25;UBERON:0000203!1.08e-39!25;UBERON:0003056!2.43e-37!61;UBERON:0000924!6.81e-36!173;UBERON:0006601!6.81e-36!173;UBERON:0002619!5.39e-33!22;UBERON:0000033!6.13e-33!123;UBERON:0004121!3.01e-32!169;UBERON:0000153!8.70e-31!129;UBERON:0007811!8.70e-31!129;UBERON:0001950!5.59e-29!20;UBERON:0007023!5.54e-26!115;UBERON:0003076!8.28e-25!15;UBERON:0003057!8.28e-25!15;UBERON:0004733!4.64e-19!12;UBERON:0002028!4.64e-19!12;UBERON:0007277!4.64e-19!12;UBERON:0002308!7.22e-19!9;UBERON:0000125!7.22e-19!9;UBERON:0004732!2.10e-17!13;UBERON:0000025!3.90e-16!194;UBERON:0009663!1.58e-15!7;UBERON:0002420!2.16e-15!9;UBERON:0007245!2.16e-15!9;UBERON:0010009!2.16e-15!9;UBERON:0010011!2.16e-15!9;UBERON:0000454!2.16e-15!9;UBERON:0000200!1.40e-13!6;UBERON:0002680!1.67e-13!9;UBERON:0001895!1.67e-13!9;UBERON:0010092!1.67e-13!9;UBERON:0002298!2.21e-12!8;UBERON:0004111!1.51e-10!241;UBERON:0000064!1.67e-10!219;UBERON:0001871!2.67e-10!7;UBERON:0000369!6.34e-10!4;UBERON:0002435!6.34e-10!4;UBERON:0000204!6.34e-10!4;UBERON:0010082!6.34e-10!4;UBERON:0002037!1.31e-08!6;UBERON:0006215!1.31e-08!6;UBERON:0000483!2.80e-08!309;UBERON:0001872!2.95e-08!5;UBERON:0002021!4.43e-08!5;UBERON:0000119!4.44e-08!312;UBERON:0000349!7.24e-08!5;UBERON:0005383!7.55e-08!3;UBERON:0005382!7.55e-08!3;UBERON:0000477!1.30e-07!286;UBERON:0002771!1.69e-07!3;UBERON:0002240!1.76e-07!3;UBERON:0001896!2.47e-07!3;UBERON:0005290!2.47e-07!3;UBERON:0010096!2.47e-07!3;UBERON:0006331!5.00e-07!3|ontology_enrichment_uberon_v019=UBERON:0000956;8.54e-44;25!UBERON:0000203;8.54e-44;25!UBERON:0002791;2.70e-36;32!UBERON:0001869;2.71e-36;32!UBERON:0003528;1.25e-33;34!UBERON:0002020;1.25e-33;34!UBERON:0001893;1.66e-33;34!UBERON:0002619;2.96e-30;22!UBERON:0001950;1.53e-27;20!UBERON:0002780;2.01e-25;41!UBERON:0001890;2.01e-25;41!UBERON:0001872;6.69e-20;5!UBERON:0002346;2.19e-15;4!UBERON:0000923;2.19e-15;4!UBERON:0010316;2.19e-15;4!UBERON:0005291;2.19e-15;4!UBERON:0000073;8.53e-15;53!UBERON:0002616;8.53e-15;53!UBERON:0002050;2.06e-12;5!UBERON:0005423;2.06e-12;5!UBERON:0002021;1.23e-11;5!UBERON:0000955;1.29e-11;68!UBERON:0001016;1.72e-10;83!UBERON:0000922;1.95e-10;49!UBERON:0001017;2.28e-10;75!UBERON:0002581;2.17e-07;1!UBERON:0002902;2.17e-07;1!UBERON:0009899;2.17e-07;1|ontology_enrichment_uberon_v019_2=UBERON:0000956,1.39e-43,25;UBERON:0000203,1.39e-43,25;UBERON:0002791,5.02e-39,32;UBERON:0001869,5.02e-39,32;UBERON:0003528,1.26e-36,34;UBERON:0002020,1.26e-36,34;UBERON:0001893,1.26e-36,34;UBERON:0001017,3.11e-35,81;UBERON:0002780,2.46e-34,41;UBERON:0001890,2.46e-34,41;UBERON:0003080,2.46e-34,41;UBERON:0006240,2.46e-34,41;UBERON:0001016,2.42e-31,89;UBERON:0002619,4.60e-30,22;UBERON:0001049,8.84e-28,56;UBERON:0005068,8.84e-28,56;UBERON:0006241,8.84e-28,56;UBERON:0007135,8.84e-28,56;UBERON:0001950,2.30e-27,20;UBERON:0002346,2.77e-27,86;UBERON:0000073,5.47e-26,53;UBERON:0002616,5.47e-26,53;UBERON:0003056,2.77e-25,61;UBERON:0004121,3.01e-23,171;UBERON:0000924,3.01e-23,171;UBERON:0006601,3.01e-23,171;UBERON:0000955,4.61e-22,68;UBERON:0006238,4.61e-22,68;UBERON:0003075,2.17e-20,82;UBERON:0007284,2.17e-20,82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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=6656 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11189 | |||
|TSSclassifier=W | |||
|UniProt=O00570 | |||
|association_with_transcript=-430bp_to_ENST00000330949,NM_005986,uc001vsb.1_5end | |||
|coexpression_cluster_id=C152 | |||
|description=CAGE_peak_1_at_SOX1_5end | |||
|id=chr13:112721457..112721482,+ | |||
|ontology_enrichment_celltype=CL:0000128!1.02e-11!7;CL:0000126!1.02e-11!7;CL:0000127!1.02e-11!7;CL:0002453!1.02e-11!7;CL:0002319!1.33e-10!25;CL:0002605!1.39e-08!3;CL:0000047!4.20e-08!8;CL:0000133!4.61e-07!59;CL:0002603!6.08e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0002605;7.02e-20;3!CL:0002319;5.57e-18;25!CL:0000047;2.53e-14;2!CL:0000540;3.32e-10;6!CL:0000404;3.32e-10;6!CL:0000128;8.20e-09;7!CL:0000126;8.20e-09;7!CL:0000127;8.20e-09;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,3.97e-20,8;CL:0002605,6.81e-20,3;CL:0002319,5.99e-18,25;CL:0000540,3.71e-10,6;CL:0000031,3.71e-10,6;CL:0000404,3.71e-10,6;CL:0000128,8.09e-09,7;CL:0000126,8.09e-09,7;CL:0000127,8.09e-09,7;CL:0002453,8.09e-09,7;CL:0000133,8.29e-09,59;CL:0000221,5.85e-07,72 | |||
|ontology_enrichment_development_v019=CL:0000031;3.32e-10;6!UBERON:0006222;2.17e-07;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!5.50e-76!57;UBERON:0005068!5.50e-76!57;UBERON:0006241!5.50e-76!57;UBERON:0007135!5.50e-76!57;UBERON:0001017!1.37e-73!82;UBERON:0005743!2.83e-72!86;UBERON:0000073!4.50e-64!94;UBERON:0001016!4.50e-64!94;UBERON:0002616!4.76e-63!59;UBERON:0000955!8.78e-60!69;UBERON:0006238!8.78e-60!69;UBERON:0002346!2.81e-58!90;UBERON:0001893!1.16e-57!34;UBERON:0002020!2.92e-57!34;UBERON:0003528!2.92e-57!34;UBERON:0002791!1.15e-55!33;UBERON:0001869!1.12e-53!32;UBERON:0003075!3.04e-53!86;UBERON:0007284!3.04e-53!86;UBERON:0002780!5.32e-53!41;UBERON:0001890!5.32e-53!41;UBERON:0006240!5.32e-53!41;UBERON:0003080!1.57e-51!42;UBERON:0000956!1.08e-39!25;UBERON:0000203!1.08e-39!25;UBERON:0003056!2.43e-37!61;UBERON:0000924!6.81e-36!173;UBERON:0006601!6.81e-36!173;UBERON:0002619!5.39e-33!22;UBERON:0000033!6.13e-33!123;UBERON:0004121!3.01e-32!169;UBERON:0000153!8.70e-31!129;UBERON:0007811!8.70e-31!129;UBERON:0001950!5.59e-29!20;UBERON:0007023!5.54e-26!115;UBERON:0003076!8.28e-25!15;UBERON:0003057!8.28e-25!15;UBERON:0004733!4.64e-19!12;UBERON:0002028!4.64e-19!12;UBERON:0007277!4.64e-19!12;UBERON:0002308!7.22e-19!9;UBERON:0000125!7.22e-19!9;UBERON:0004732!2.10e-17!13;UBERON:0000025!3.90e-16!194;UBERON:0009663!1.58e-15!7;UBERON:0002420!2.16e-15!9;UBERON:0007245!2.16e-15!9;UBERON:0010009!2.16e-15!9;UBERON:0010011!2.16e-15!9;UBERON:0000454!2.16e-15!9;UBERON:0000200!1.40e-13!6;UBERON:0002680!1.67e-13!9;UBERON:0001895!1.67e-13!9;UBERON:0010092!1.67e-13!9;UBERON:0002298!2.21e-12!8;UBERON:0004111!1.51e-10!241;UBERON:0000064!1.67e-10!219;UBERON:0001871!2.67e-10!7;UBERON:0000369!6.34e-10!4;UBERON:0002435!6.34e-10!4;UBERON:0000204!6.34e-10!4;UBERON:0010082!6.34e-10!4;UBERON:0002037!1.31e-08!6;UBERON:0006215!1.31e-08!6;UBERON:0000483!2.80e-08!309;UBERON:0001872!2.95e-08!5;UBERON:0002021!4.43e-08!5;UBERON:0000119!4.44e-08!312;UBERON:0000349!7.24e-08!5;UBERON:0005383!7.55e-08!3;UBERON:0005382!7.55e-08!3;UBERON:0000477!1.30e-07!286;UBERON:0002771!1.69e-07!3;UBERON:0002240!1.76e-07!3;UBERON:0001896!2.47e-07!3;UBERON:0005290!2.47e-07!3;UBERON:0010096!2.47e-07!3;UBERON:0006331!5.00e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0000956;8.54e-44;25!UBERON:0000203;8.54e-44;25!UBERON:0002791;2.70e-36;32!UBERON:0001869;2.71e-36;32!UBERON:0003528;1.25e-33;34!UBERON:0002020;1.25e-33;34!UBERON:0001893;1.66e-33;34!UBERON:0002619;2.96e-30;22!UBERON:0001950;1.53e-27;20!UBERON:0002780;2.01e-25;41!UBERON:0001890;2.01e-25;41!UBERON:0001872;6.69e-20;5!UBERON:0002346;2.19e-15;4!UBERON:0000923;2.19e-15;4!UBERON:0010316;2.19e-15;4!UBERON:0005291;2.19e-15;4!UBERON:0000073;8.53e-15;53!UBERON:0002616;8.53e-15;53!UBERON:0002050;2.06e-12;5!UBERON:0005423;2.06e-12;5!UBERON:0002021;1.23e-11;5!UBERON:0000955;1.29e-11;68!UBERON:0001016;1.72e-10;83!UBERON:0000922;1.95e-10;49!UBERON:0001017;2.28e-10;75!UBERON:0002581;2.17e-07;1!UBERON:0002902;2.17e-07;1!UBERON:0009899;2.17e-07;1 | |||
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|short_description=p1@SOX1 | |||
}} |
Revision as of 01:33, 11 September 2013
Short description: | p1@SOX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_SOX1_5end |
Coexpression cluster: | C152_peripheral_neuroectodermal_neuroepithelioma_neuroblastoma_testicular_carcinoid_lung |
Association with transcript: | -430bp_to_ENST00000330949, NM_005986, uc001vsb.1_5end |
EntrezGene: | SOX1 |
HGNC: | 11189 |
UniProt: | O00570 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 3.97e-20 | 8 |
astrocyte of the cerebral cortex | 6.81e-20 | 3 |
neural cell | 5.99e-18 | 25 |
neuron | 3.71e-10 | 6 |
neuroblast | 3.71e-10 | 6 |
electrically signaling cell | 3.71e-10 | 6 |
oligodendrocyte | 8.09e-09 | 7 |
macroglial cell | 8.09e-09 | 7 |
astrocyte | 8.09e-09 | 7 |
oligodendrocyte precursor cell | 8.09e-09 | 7 |
neurectodermal cell | 8.29e-09 | 59 |
ectodermal cell | 5.85e-07 | 72 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.