FFCP PHASE1:Hg19::chr17:48268768..48268861,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=1277|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=2197|TSSclassifier=W|UniProt=|association_with_transcript=-483bp_to_ENST00000494334_5end|coexpression_cluster_id=C59|description=CAGE_peak_14_at_COL1A1_5end|id=chr17:48268768..48268861,-|ontology_enrichment_celltype=CL:0000055!5.82e-43!180;CL:0000057!1.11e-25!75;CL:0000183!1.10e-17!59;CL:0000680!1.63e-17!57;CL:0000056!1.63e-17!57;CL:0000355!1.63e-17!57;CL:0000187!7.50e-17!54;CL:0000393!3.38e-15!60;CL:0000211!3.38e-15!60;CL:0000192!4.99e-13!42;CL:0000514!4.99e-13!42;CL:0000048!1.28e-11!430;CL:0000723!9.16e-11!436;CL:0000034!4.05e-10!444;CL:0002371!1.73e-09!591;CL:0000359!2.89e-09!32;CL:0002620!5.35e-09!23;CL:0000144!2.17e-08!625;CL:0000499!4.58e-08!27;CL:0002334!7.13e-08!12;CL:0000222!2.06e-07!119;CL:0002494!4.91e-07!16;CL:0000327!6.38e-07!14|ontology_enrichment_celltype_v019=CL:0000134;7.75e-12;55!CL:0000187;1.91e-11;55!CL:0000057;4.20e-11;73!CL:0000192;5.03e-11;43!CL:0000723;1.57e-10;61!CL:0000048;1.65e-10;58!CL:0000359;4.35e-10;32!CL:0002320;8.19e-10;188!CL:0002620;1.39e-09;23!CL:0002334;6.29e-09;12!CL:0000393;8.19e-09;61!CL:0000211;8.19e-09;61!CL:0000499;3.35e-08;28!CL:0002494;5.45e-08;16!CL:0000034;1.66e-07;69!CL:0000327;3.29e-07;15!CL:0002570;9.22e-07;8|ontology_enrichment_celltype_v019_2=CL:0000057,1.80e-28,76;CL:0000680,1.34e-20,58;CL:0000056,1.34e-20,58;CL:0000355,1.34e-20,58;CL:0000187,8.03e-20,55;CL:0000048,1.49e-18,427;CL:0000723,1.96e-17,433;CL:0000393,4.78e-16,61;CL:0000211,4.78e-16,61;CL:0000034,5.21e-16,441;CL:0000192,2.44e-15,43;CL:0000514,2.44e-15,43;CL:0000359,1.43e-10,32;CL:0002620,1.53e-09,23;CL:0002334,6.04e-09,12;CL:0002320,9.62e-09,361;CL:0000499,3.10e-08,28;CL:0002494,5.74e-08,16;CL:0000222,1.08e-07,121;CL:0000134,3.15e-07,354;CL:0000327,3.23e-07,15;CL:0002570,9.31e-07,8|ontology_enrichment_development_v019=CL:0000355;4.17e-11;58!CL:0000514;5.03e-11;43|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:2394;3.07e-07;14|ontology_enrichment_disease_v019_2=DOID:2394,2.88e-07,14|ontology_enrichment_uberon=UBERON:0000914!4.04e-22!83;UBERON:0002329!4.04e-22!83;UBERON:0003077!4.04e-22!83;UBERON:0003059!4.04e-22!83;UBERON:0007282!4.04e-22!83;UBERON:0009618!4.04e-22!83;UBERON:0007285!4.04e-22!83;UBERON:0004290!2.20e-19!70;UBERON:0001134!7.76e-18!61;UBERON:0002036!7.76e-18!61;UBERON:0003082!7.76e-18!61;UBERON:0002385!9.07e-18!63;UBERON:0001015!9.07e-18!63;UBERON:0000383!9.07e-18!63;UBERON:0000486!1.86e-16!82;UBERON:0005256!5.58e-16!143;UBERON:0002100!3.43e-11!216;UBERON:0000475!2.32e-09!365;UBERON:0004872!9.86e-09!84;UBERON:0002199!4.02e-08!45;UBERON:0002416!4.02e-08!45;UBERON:0003104!4.40e-08!238;UBERON:0009142!4.40e-08!238;UBERON:0001013!7.43e-08!14;UBERON:0003102!1.10e-07!95;UBERON:0000481!1.43e-07!347;UBERON:0000490!2.24e-07!138|ontology_enrichment_uberon_v019=UBERON:0002384;1.17e-09;198!UBERON:0002385;1.12e-08;31!UBERON:0001015;1.12e-08;31!UBERON:0000383;1.12e-08;31!UBERON:0001013;3.83e-08;14!UBERON:0002204;5.11e-08;70!UBERON:0002199;9.66e-07;46!UBERON:0002416;9.66e-07;46|ontology_enrichment_uberon_v019_2=UBERON:0007524,1.38e-22,73;UBERON:0002329,1.67e-22,71;UBERON:0003059,1.67e-22,71;UBERON:0007282,1.67e-22,71;UBERON:0004290,1.67e-22,71;UBERON:0009618,1.67e-22,71;UBERON:0003077,7.27e-22,72;UBERON:0007285,7.27e-22,72;UBERON:0001134,1.11e-20,62;UBERON:0002036,1.11e-20,62;UBERON:0003082,1.11e-20,62;UBERON:0007503,2.92e-20,78;UBERON:0002385,3.78e-20,64;UBERON:0001015,3.78e-20,64;UBERON:0000383,3.78e-20,64;UBERON:0000486,1.27e-18,83;UBERON:0005256,6.04e-15,122;UBERON:0003104,9.12e-15,160;UBERON:0009142,9.12e-15,160;UBERON:0002199,1.41e-09,46;UBERON:0002416,1.41e-09,46;UBERON:0000490,2.58e-09,148;UBERON:0004872,3.75e-09,83;UBERON:0000926,3.78e-09,315;UBERON:0004120,3.78e-09,315;UBERON:0006603,3.78e-09,315;UBERON:0002384,8.81e-09,371;UBERON:0003102,3.53e-08,99;UBERON:0001013,3.71e-08,14;UBERON:0002100,4.85e-08,199;UBERON:0002097,9.09e-08,41;UBERON:0000948,3.06e-07,24;UBERON:0005498,3.06e-07,24;UBERON:0004140,3.06e-07,24;UBERON:0009881,3.06e-07,24;UBERON:0004141,3.06e-07,24;UBERON:0003084,3.06e-07,24;UBERON:0007005,3.06e-07,24;UBERON:0004139,3.06e-07,24;UBERON:0004291,3.06e-07,24;UBERON:0001637,6.04e-07,42;UBERON:0003509,6.04e-07,42;UBERON:0004572,6.04e-07,42|phase1_expression=21.8014055124668,34.8983853942303,25.9356103536587,62.0454449789409,73.3016194860752,53.2126499701225,58.2589719787114,3.15859936713415,1.82829939739887,0.737201809504527,0,3.49506195408276,26.6404648010738,7.92104658944298,11.5989081504771,6.72325146451775,3.61616716814386,3.65155045193687,3.90346239032406,9.97280570421982,20.4000691244253,24.4494682752909,2.28988789704845,1.77936752594749,4.14290710662849,0,0.164201178899891,0.0787107813136792,0,0,0.464448369948228,0.919421224478927,0,0,0,0,0,0.553995408531877,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=1277 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2197 | |||
|TSSclassifier=W | |||
|UniProt= | |||
|association_with_transcript=-483bp_to_ENST00000494334_5end | |||
|coexpression_cluster_id=C59 | |||
|description=CAGE_peak_14_at_COL1A1_5end | |||
|id=chr17:48268768..48268861,- | |||
|ontology_enrichment_celltype=CL:0000055!5.82e-43!180;CL:0000057!1.11e-25!75;CL:0000183!1.10e-17!59;CL:0000680!1.63e-17!57;CL:0000056!1.63e-17!57;CL:0000355!1.63e-17!57;CL:0000187!7.50e-17!54;CL:0000393!3.38e-15!60;CL:0000211!3.38e-15!60;CL:0000192!4.99e-13!42;CL:0000514!4.99e-13!42;CL:0000048!1.28e-11!430;CL:0000723!9.16e-11!436;CL:0000034!4.05e-10!444;CL:0002371!1.73e-09!591;CL:0000359!2.89e-09!32;CL:0002620!5.35e-09!23;CL:0000144!2.17e-08!625;CL:0000499!4.58e-08!27;CL:0002334!7.13e-08!12;CL:0000222!2.06e-07!119;CL:0002494!4.91e-07!16;CL:0000327!6.38e-07!14 | |||
|ontology_enrichment_celltype_v019=CL:0000134;7.75e-12;55!CL:0000187;1.91e-11;55!CL:0000057;4.20e-11;73!CL:0000192;5.03e-11;43!CL:0000723;1.57e-10;61!CL:0000048;1.65e-10;58!CL:0000359;4.35e-10;32!CL:0002320;8.19e-10;188!CL:0002620;1.39e-09;23!CL:0002334;6.29e-09;12!CL:0000393;8.19e-09;61!CL:0000211;8.19e-09;61!CL:0000499;3.35e-08;28!CL:0002494;5.45e-08;16!CL:0000034;1.66e-07;69!CL:0000327;3.29e-07;15!CL:0002570;9.22e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.80e-28,76;CL:0000680,1.34e-20,58;CL:0000056,1.34e-20,58;CL:0000355,1.34e-20,58;CL:0000187,8.03e-20,55;CL:0000048,1.49e-18,427;CL:0000723,1.96e-17,433;CL:0000393,4.78e-16,61;CL:0000211,4.78e-16,61;CL:0000034,5.21e-16,441;CL:0000192,2.44e-15,43;CL:0000514,2.44e-15,43;CL:0000359,1.43e-10,32;CL:0002620,1.53e-09,23;CL:0002334,6.04e-09,12;CL:0002320,9.62e-09,361;CL:0000499,3.10e-08,28;CL:0002494,5.74e-08,16;CL:0000222,1.08e-07,121;CL:0000134,3.15e-07,354;CL:0000327,3.23e-07,15;CL:0002570,9.31e-07,8 | |||
|ontology_enrichment_development_v019=CL:0000355;4.17e-11;58!CL:0000514;5.03e-11;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;3.07e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,2.88e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!4.04e-22!83;UBERON:0002329!4.04e-22!83;UBERON:0003077!4.04e-22!83;UBERON:0003059!4.04e-22!83;UBERON:0007282!4.04e-22!83;UBERON:0009618!4.04e-22!83;UBERON:0007285!4.04e-22!83;UBERON:0004290!2.20e-19!70;UBERON:0001134!7.76e-18!61;UBERON:0002036!7.76e-18!61;UBERON:0003082!7.76e-18!61;UBERON:0002385!9.07e-18!63;UBERON:0001015!9.07e-18!63;UBERON:0000383!9.07e-18!63;UBERON:0000486!1.86e-16!82;UBERON:0005256!5.58e-16!143;UBERON:0002100!3.43e-11!216;UBERON:0000475!2.32e-09!365;UBERON:0004872!9.86e-09!84;UBERON:0002199!4.02e-08!45;UBERON:0002416!4.02e-08!45;UBERON:0003104!4.40e-08!238;UBERON:0009142!4.40e-08!238;UBERON:0001013!7.43e-08!14;UBERON:0003102!1.10e-07!95;UBERON:0000481!1.43e-07!347;UBERON:0000490!2.24e-07!138 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;1.17e-09;198!UBERON:0002385;1.12e-08;31!UBERON:0001015;1.12e-08;31!UBERON:0000383;1.12e-08;31!UBERON:0001013;3.83e-08;14!UBERON:0002204;5.11e-08;70!UBERON:0002199;9.66e-07;46!UBERON:0002416;9.66e-07;46 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,1.38e-22,73;UBERON:0002329,1.67e-22,71;UBERON:0003059,1.67e-22,71;UBERON:0007282,1.67e-22,71;UBERON:0004290,1.67e-22,71;UBERON:0009618,1.67e-22,71;UBERON:0003077,7.27e-22,72;UBERON:0007285,7.27e-22,72;UBERON:0001134,1.11e-20,62;UBERON:0002036,1.11e-20,62;UBERON:0003082,1.11e-20,62;UBERON:0007503,2.92e-20,78;UBERON:0002385,3.78e-20,64;UBERON:0001015,3.78e-20,64;UBERON:0000383,3.78e-20,64;UBERON:0000486,1.27e-18,83;UBERON:0005256,6.04e-15,122;UBERON:0003104,9.12e-15,160;UBERON:0009142,9.12e-15,160;UBERON:0002199,1.41e-09,46;UBERON:0002416,1.41e-09,46;UBERON:0000490,2.58e-09,148;UBERON:0004872,3.75e-09,83;UBERON:0000926,3.78e-09,315;UBERON:0004120,3.78e-09,315;UBERON:0006603,3.78e-09,315;UBERON:0002384,8.81e-09,371;UBERON:0003102,3.53e-08,99;UBERON:0001013,3.71e-08,14;UBERON:0002100,4.85e-08,199;UBERON:0002097,9.09e-08,41;UBERON:0000948,3.06e-07,24;UBERON:0005498,3.06e-07,24;UBERON:0004140,3.06e-07,24;UBERON:0009881,3.06e-07,24;UBERON:0004141,3.06e-07,24;UBERON:0003084,3.06e-07,24;UBERON:0007005,3.06e-07,24;UBERON:0004139,3.06e-07,24;UBERON:0004291,3.06e-07,24;UBERON:0001637,6.04e-07,42;UBERON:0003509,6.04e-07,42;UBERON:0004572,6.04e-07,42 | |||
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| |||
|short_description=p14@COL1A1 | |||
}} |
Revision as of 14:27, 11 September 2013
Short description: | p14@COL1A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_14_at_COL1A1_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | -483bp_to_ENST00000494334_5end |
EntrezGene: | COL1A1 |
HGNC: | 2197 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.80e-28 | 76 |
muscle precursor cell | 1.34e-20 | 58 |
myoblast | 1.34e-20 | 58 |
multi-potent skeletal muscle stem cell | 1.34e-20 | 58 |
muscle cell | 8.03e-20 | 55 |
multi fate stem cell | 1.49e-18 | 427 |
somatic stem cell | 1.96e-17 | 433 |
electrically responsive cell | 4.78e-16 | 61 |
electrically active cell | 4.78e-16 | 61 |
stem cell | 5.21e-16 | 441 |
smooth muscle cell | 2.44e-15 | 43 |
smooth muscle myoblast | 2.44e-15 | 43 |
vascular associated smooth muscle cell | 1.43e-10 | 32 |
skin fibroblast | 1.53e-09 | 23 |
preadipocyte | 6.04e-09 | 12 |
connective tissue cell | 9.62e-09 | 361 |
stromal cell | 3.10e-08 | 28 |
cardiocyte | 5.74e-08 | 16 |
mesodermal cell | 1.08e-07 | 121 |
mesenchymal cell | 3.15e-07 | 354 |
extracellular matrix secreting cell | 3.23e-07 | 15 |
mesenchymal stem cell of adipose | 9.31e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 2.88e-07 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.