FFCP PHASE1:Mm9::chr14:30781555..30781648,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=80795|HGNC=|MCL_coexpression_id=1606|UniProt=Q9JLJ1|association_with_transcript=0bp_to_ENSMUST00000133229,NM_019979,uc007sul.1_5end|description=CAGE_peak_1_at_Selk_5end|id=chr14:30781555..30781648,+|ontology_enrichment_celltype=CL:0000055!3.96e-18!50;CL:0000221!1.78e-16!44;CL:0000133!1.78e-16!44;CL:0002319!7.71e-16!43;CL:0002321!2.39e-13!70;CL:0000220!2.39e-13!70;CL:0000393!9.22e-12!39;CL:0000211!9.22e-12!39;CL:0000144!2.46e-11!121;CL:0000012!2.46e-11!121;CL:0000117!6.69e-11!23;CL:0000337!6.69e-11!23;CL:0002371!1.79e-10!118;CL:0000540!3.52e-10!33;CL:0000047!3.52e-10!33;CL:0000031!3.52e-10!33;CL:0000404!3.52e-10!33;CL:0000548!4.47e-09!115;CL:0000004!4.47e-09!115;CL:0000255!4.47e-09!115;CL:0000723!3.49e-08!91;CL:0000048!3.49e-08!91;CL:0000034!2.19e-07!97;CL:0000333!3.86e-07!10;CL:0000095!3.86e-07!10;CL:0000243!3.86e-07!10;CL:0000123!3.86e-07!10;CL:0000125!3.86e-07!10;CL:0000030!3.86e-07!10;CL:0000339!3.86e-07!10|ontology_enrichment_celltype_v019_2=CL:0000221,1.78e-16,44;CL:0000133,1.78e-16,44;CL:0002319,7.71e-16,43;CL:0002321,2.39e-13,70;CL:0000393,9.22e-12,39;CL:0000211,9.22e-12,39;CL:0000117,6.69e-11,23;CL:0000337,6.69e-11,23;CL:0000540,3.52e-10,33;CL:0000047,3.52e-10,33;CL:0000031,3.52e-10,33;CL:0000404,3.52e-10,33;CL:0000723,3.49e-08,91;CL:0000048,3.49e-08,91;CL:0000034,2.19e-07,97;CL:0000333,3.86e-07,10;CL:0000095,3.86e-07,10;CL:0000243,3.86e-07,10;CL:0000123,3.86e-07,10;CL:0000125,3.86e-07,10;CL:0000030,3.86e-07,10;CL:0000339,3.86e-07,10|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.32e-24!75;UBERON:0001016!1.32e-24!75;UBERON:0001017!3.03e-23!73;UBERON:0005743!3.03e-23!73;UBERON:0004121!2.48e-18!102;UBERON:0000924!2.48e-18!102;UBERON:0006601!2.48e-18!102;UBERON:0001049!5.68e-18!52;UBERON:0005068!5.68e-18!52;UBERON:0006241!5.68e-18!52;UBERON:0007135!5.68e-18!52;UBERON:0000955!5.82e-17!50;UBERON:0006238!5.82e-17!50;UBERON:0002616!7.49e-17!49;UBERON:0000033!1.07e-16!63;UBERON:0002346!7.98e-15!71;UBERON:0003075!7.98e-15!71;UBERON:0007284!7.98e-15!71;UBERON:0002020!4.81e-14!34;UBERON:0003080!1.22e-12!40;UBERON:0002780!2.81e-12!39;UBERON:0001890!2.81e-12!39;UBERON:0006240!2.81e-12!39;UBERON:0004111!3.73e-12!122;UBERON:0002791!6.00e-12!29;UBERON:0003528!6.00e-12!29;UBERON:0001893!6.00e-12!29;UBERON:0003056!1.52e-11!49;UBERON:0000025!3.24e-11!114;UBERON:0000956!1.73e-08!21;UBERON:0001869!1.73e-08!21;UBERON:0000203!1.73e-08!21;UBERON:0002619!3.69e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.32e-24,75;UBERON:0001017,3.03e-23,73;UBERON:0004121,1.45e-19,95;UBERON:0000924,1.45e-19,95;UBERON:0006601,1.45e-19,95;UBERON:0000073,4.19e-19,54;UBERON:0001049,5.68e-18,52;UBERON:0005068,5.68e-18,52;UBERON:0006241,5.68e-18,52;UBERON:0007135,5.68e-18,52;UBERON:0002346,2.12e-16,64;UBERON:0003075,2.12e-16,64;UBERON:0007284,2.12e-16,64;UBERON:0000955,1.97e-15,47;UBERON:0006238,1.97e-15,47;UBERON:0002616,2.54e-15,46;UBERON:0010314,1.53e-14,92;UBERON:0002020,4.81e-14,34;UBERON:0010371,1.71e-13,73;UBERON:0003080,1.22e-12,40;UBERON:0002780,2.81e-12,39;UBERON:0001890,2.81e-12,39;UBERON:0006240,2.81e-12,39;UBERON:0004111,3.73e-12,122;UBERON:0003528,6.00e-12,29;UBERON:0002791,6.00e-12,29;UBERON:0001893,6.00e-12,29;UBERON:0003056,1.52e-11,49;UBERON:0000025,3.24e-11,114;UBERON:0000956,1.73e-08,21;UBERON:0001869,1.73e-08,21;UBERON:0000203,1.73e-08,21;UBERON:0002619,3.69e-07,17|phase1_expression=98.4915409694483,85.1499994640041,75.0748744992734,46.8819527525587,38.0680754759224,42.4734557937081,44.1527890725544,40.0282302668886,56.174700138515,51.0260667381946,30.1343624076889,22.8946096316615,39.7185693440397,43.0982583925657,24.9832321361747,29.7638643063044,27.9824751251259,39.4327706697797,38.8033847104241,42.014575528005,52.8118831838143,48.5532751372329,67.1283458087064,55.3573782865187,55.9758645803895,105.084449433049,75.8141113239972,66.7960821326256,60.4274473871269,50.4060259519862,81.3750974104968,16.5107975099504,28.2929802288902,0,30.3294200738838,30.7534093913211,26.7461856703704,150.671387065287,180.488464584998,188.992071574541,182.351761289614,168.712234784736,179.638830621527,61.4376471720817,58.0889815887818,89.0201747984156,128.312180473078,115.553332881637,106.547798626219,141.739396425153,107.509571808278,97.7517437681807,64.931868544344,46.423177088726,29.5762543245368,75.3770147585325,75.0717612639543,102.618746363211,88.4122933956442,79.877637870077,95.0747105259269,85.7276666134904,92.4866587955585,113.387364377456,71.1983781048222,111.545378046538,103.062438018331,96.8230129410317,76.9376923328904,81.4085808140095,74.4550363183892,132.542056763365,132.962861652871,74.8418783203369,97.0914621414734,71.6990653555816,75.9799578895782,116.961601686032,109.828671278214,84.0115652841335,112.895752205374,89.5970997357627,147.408623472729,114.803572446463,115.209878823715,63.9344030477859,82.8603182250779,78.8469655841022,118.814397339766,114.7176282421,66.0891034239825,111.85510400758,46.9180220258348,78.2569627874835,73.42473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}} | ||
|EntrezGene=80795 | |||
|HGNC= | |||
|MCL_coexpression_id=1606 | |||
|UniProt=Q9JLJ1 | |||
|association_with_transcript=0bp_to_ENSMUST00000133229,NM_019979,uc007sul.1_5end | |||
|description=CAGE_peak_1_at_Selk_5end | |||
|id=chr14:30781555..30781648,+ | |||
|ontology_enrichment_celltype=CL:0000055!3.96e-18!50;CL:0000221!1.78e-16!44;CL:0000133!1.78e-16!44;CL:0002319!7.71e-16!43;CL:0002321!2.39e-13!70;CL:0000220!2.39e-13!70;CL:0000393!9.22e-12!39;CL:0000211!9.22e-12!39;CL:0000144!2.46e-11!121;CL:0000012!2.46e-11!121;CL:0000117!6.69e-11!23;CL:0000337!6.69e-11!23;CL:0002371!1.79e-10!118;CL:0000540!3.52e-10!33;CL:0000047!3.52e-10!33;CL:0000031!3.52e-10!33;CL:0000404!3.52e-10!33;CL:0000548!4.47e-09!115;CL:0000004!4.47e-09!115;CL:0000255!4.47e-09!115;CL:0000723!3.49e-08!91;CL:0000048!3.49e-08!91;CL:0000034!2.19e-07!97;CL:0000333!3.86e-07!10;CL:0000095!3.86e-07!10;CL:0000243!3.86e-07!10;CL:0000123!3.86e-07!10;CL:0000125!3.86e-07!10;CL:0000030!3.86e-07!10;CL:0000339!3.86e-07!10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,1.78e-16,44;CL:0000133,1.78e-16,44;CL:0002319,7.71e-16,43;CL:0002321,2.39e-13,70;CL:0000393,9.22e-12,39;CL:0000211,9.22e-12,39;CL:0000117,6.69e-11,23;CL:0000337,6.69e-11,23;CL:0000540,3.52e-10,33;CL:0000047,3.52e-10,33;CL:0000031,3.52e-10,33;CL:0000404,3.52e-10,33;CL:0000723,3.49e-08,91;CL:0000048,3.49e-08,91;CL:0000034,2.19e-07,97;CL:0000333,3.86e-07,10;CL:0000095,3.86e-07,10;CL:0000243,3.86e-07,10;CL:0000123,3.86e-07,10;CL:0000125,3.86e-07,10;CL:0000030,3.86e-07,10;CL:0000339,3.86e-07,10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.32e-24!75;UBERON:0001016!1.32e-24!75;UBERON:0001017!3.03e-23!73;UBERON:0005743!3.03e-23!73;UBERON:0004121!2.48e-18!102;UBERON:0000924!2.48e-18!102;UBERON:0006601!2.48e-18!102;UBERON:0001049!5.68e-18!52;UBERON:0005068!5.68e-18!52;UBERON:0006241!5.68e-18!52;UBERON:0007135!5.68e-18!52;UBERON:0000955!5.82e-17!50;UBERON:0006238!5.82e-17!50;UBERON:0002616!7.49e-17!49;UBERON:0000033!1.07e-16!63;UBERON:0002346!7.98e-15!71;UBERON:0003075!7.98e-15!71;UBERON:0007284!7.98e-15!71;UBERON:0002020!4.81e-14!34;UBERON:0003080!1.22e-12!40;UBERON:0002780!2.81e-12!39;UBERON:0001890!2.81e-12!39;UBERON:0006240!2.81e-12!39;UBERON:0004111!3.73e-12!122;UBERON:0002791!6.00e-12!29;UBERON:0003528!6.00e-12!29;UBERON:0001893!6.00e-12!29;UBERON:0003056!1.52e-11!49;UBERON:0000025!3.24e-11!114;UBERON:0000956!1.73e-08!21;UBERON:0001869!1.73e-08!21;UBERON:0000203!1.73e-08!21;UBERON:0002619!3.69e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.32e-24,75;UBERON:0001017,3.03e-23,73;UBERON:0004121,1.45e-19,95;UBERON:0000924,1.45e-19,95;UBERON:0006601,1.45e-19,95;UBERON:0000073,4.19e-19,54;UBERON:0001049,5.68e-18,52;UBERON:0005068,5.68e-18,52;UBERON:0006241,5.68e-18,52;UBERON:0007135,5.68e-18,52;UBERON:0002346,2.12e-16,64;UBERON:0003075,2.12e-16,64;UBERON:0007284,2.12e-16,64;UBERON:0000955,1.97e-15,47;UBERON:0006238,1.97e-15,47;UBERON:0002616,2.54e-15,46;UBERON:0010314,1.53e-14,92;UBERON:0002020,4.81e-14,34;UBERON:0010371,1.71e-13,73;UBERON:0003080,1.22e-12,40;UBERON:0002780,2.81e-12,39;UBERON:0001890,2.81e-12,39;UBERON:0006240,2.81e-12,39;UBERON:0004111,3.73e-12,122;UBERON:0003528,6.00e-12,29;UBERON:0002791,6.00e-12,29;UBERON:0001893,6.00e-12,29;UBERON:0003056,1.52e-11,49;UBERON:0000025,3.24e-11,114;UBERON:0000956,1.73e-08,21;UBERON:0001869,1.73e-08,21;UBERON:0000203,1.73e-08,21;UBERON:0002619,3.69e-07,17 | |||
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| |||
|short_description=p1@Selk | |||
}} |
Revision as of 01:55, 13 September 2013
Short description: | p1@Selk |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Selk_5end |
Coexpression cluster: | MCL_coexpression_mm9:1606 |
Association with transcript: | 0bp_to_ENSMUST00000133229, NM_019979, uc007sul.1_5end |
EntrezGene: | Selk |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 1.78e-16 | 44 |
neurectodermal cell | 1.78e-16 | 44 |
neural cell | 7.71e-16 | 43 |
embryonic cell | 2.39e-13 | 70 |
electrically responsive cell | 9.22e-12 | 39 |
electrically active cell | 9.22e-12 | 39 |
CNS neuron (sensu Vertebrata) | 6.69e-11 | 23 |
neuroblast (sensu Vertebrata) | 6.69e-11 | 23 |
neuron | 3.52e-10 | 33 |
neuronal stem cell | 3.52e-10 | 33 |
neuroblast | 3.52e-10 | 33 |
electrically signaling cell | 3.52e-10 | 33 |
somatic stem cell | 3.49e-08 | 91 |
multi fate stem cell | 3.49e-08 | 91 |
stem cell | 2.19e-07 | 97 |
migratory neural crest cell | 3.86e-07 | 10 |
neuron associated cell | 3.86e-07 | 10 |
glial cell (sensu Vertebrata) | 3.86e-07 | 10 |
neuron associated cell (sensu Vertebrata) | 3.86e-07 | 10 |
glial cell | 3.86e-07 | 10 |
glioblast | 3.86e-07 | 10 |
glioblast (sensu Vertebrata) | 3.86e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
nervous system | 1.32e-24 | 75 |
central nervous system | 3.03e-23 | 73 |
ectoderm-derived structure | 1.45e-19 | 95 |
ectoderm | 1.45e-19 | 95 |
presumptive ectoderm | 1.45e-19 | 95 |
regional part of nervous system | 4.19e-19 | 54 |
neural tube | 5.68e-18 | 52 |
neural rod | 5.68e-18 | 52 |
future spinal cord | 5.68e-18 | 52 |
neural keel | 5.68e-18 | 52 |
neurectoderm | 2.12e-16 | 64 |
neural plate | 2.12e-16 | 64 |
presumptive neural plate | 2.12e-16 | 64 |
brain | 1.97e-15 | 47 |
future brain | 1.97e-15 | 47 |
regional part of brain | 2.54e-15 | 46 |
structure with developmental contribution from neural crest | 1.53e-14 | 92 |
gray matter | 4.81e-14 | 34 |
ecto-epithelium | 1.71e-13 | 73 |
anterior neural tube | 1.22e-12 | 40 |
regional part of forebrain | 2.81e-12 | 39 |
forebrain | 2.81e-12 | 39 |
future forebrain | 2.81e-12 | 39 |
anatomical conduit | 3.73e-12 | 122 |
brain grey matter | 6.00e-12 | 29 |
regional part of telencephalon | 6.00e-12 | 29 |
telencephalon | 6.00e-12 | 29 |
pre-chordal neural plate | 1.52e-11 | 49 |
tube | 3.24e-11 | 114 |
cerebral cortex | 1.73e-08 | 21 |
cerebral hemisphere | 1.73e-08 | 21 |
pallium | 1.73e-08 | 21 |
regional part of cerebral cortex | 3.69e-07 | 17 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.