FFCP PHASE1:Mm9::chr17:36116876..36116954,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=14670|HGNC=|MCL_coexpression_id=1|UniProt=E9PYS8,P36916,Q52KE3|association_with_transcript=0bp_to_ENSMUST00000166679,NM_008136,uc008cjo.1_5end|description=CAGE_peak_1_at_Gnl1_5end|id=chr17:36116876..36116954,+|ontology_enrichment_celltype=CL:0000548!8.09e-13!115;CL:0000004!8.09e-13!115;CL:0000255!8.09e-13!115;CL:0000144!1.57e-11!121;CL:0000012!1.57e-11!121;CL:0002371!3.81e-11!118;CL:0000034!5.29e-11!97;CL:0000723!1.92e-10!91;CL:0000048!1.92e-10!91;CL:0000117!4.89e-09!23;CL:0000337!4.89e-09!23;CL:0000219!9.53e-09!54;CL:0002319!1.82e-08!43;CL:0000221!2.37e-08!44;CL:0000133!2.37e-08!44;CL:0000988!2.67e-08!32;CL:0002032!2.67e-08!32;CL:0000037!2.67e-08!32;CL:0000566!2.67e-08!32;CL:0000837!2.67e-08!32;CL:0002031!3.74e-08!25;CL:0000055!1.26e-07!50;CL:0002320!2.57e-07!46;CL:0000134!2.57e-07!46;CL:0000738!2.68e-07!17;CL:0002087!2.68e-07!17|ontology_enrichment_celltype_v019_2=CL:0000034,5.25e-11,97;CL:0000723,1.90e-10,91;CL:0000048,1.90e-10,91;CL:0000117,4.89e-09,23;CL:0000337,4.89e-09,23;CL:0000219,9.53e-09,54;CL:0002319,1.82e-08,43;CL:0000221,2.37e-08,44;CL:0000133,2.37e-08,44;CL:0000988,2.67e-08,32;CL:0002032,2.67e-08,32;CL:0000037,2.67e-08,32;CL:0000837,2.67e-08,32;CL:0002031,3.74e-08,25;CL:0002320,2.57e-07,46;CL:0000134,2.57e-07,46;CL:0000738,2.68e-07,17;CL:0002087,2.68e-07,17|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007811!3.35e-21!86;UBERON:0000073!4.96e-21!75;UBERON:0001016!4.96e-21!75;UBERON:0001017!1.48e-20!73;UBERON:0005743!1.48e-20!73;UBERON:0001049!4.04e-19!52;UBERON:0005068!4.04e-19!52;UBERON:0006241!4.04e-19!52;UBERON:0007135!4.04e-19!52;UBERON:0000955!1.50e-18!50;UBERON:0006238!1.50e-18!50;UBERON:0002616!5.86e-18!49;UBERON:0000153!1.51e-17!94;UBERON:0004121!6.97e-16!102;UBERON:0000924!6.97e-16!102;UBERON:0006601!6.97e-16!102;UBERON:0002020!1.91e-15!34;UBERON:0000033!1.41e-14!63;UBERON:0003080!1.02e-13!40;UBERON:0002780!3.05e-13!39;UBERON:0001890!3.05e-13!39;UBERON:0006240!3.05e-13!39;UBERON:0002346!4.58e-13!71;UBERON:0003075!4.58e-13!71;UBERON:0007284!4.58e-13!71;UBERON:0002791!6.57e-13!29;UBERON:0003528!6.57e-13!29;UBERON:0001893!6.57e-13!29;UBERON:0000064!1.38e-12!99;UBERON:0003056!3.07e-11!49;UBERON:0002619!8.34e-10!17;UBERON:0000956!4.69e-09!21;UBERON:0001869!4.69e-09!21;UBERON:0000203!4.69e-09!21;UBERON:0002021!5.41e-08!10;UBERON:0000411!5.41e-08!10;UBERON:0001950!5.41e-08!10;UBERON:0002384!2.57e-07!46;UBERON:0002390!6.20e-07!45;UBERON:0003061!6.20e-07!45|ontology_enrichment_uberon_v019_2=UBERON:0001016,4.96e-21,75;UBERON:0000073,1.19e-20,54;UBERON:0001017,1.48e-20,73;UBERON:0001049,4.04e-19,52;UBERON:0005068,4.04e-19,52;UBERON:0006241,4.04e-19,52;UBERON:0007135,4.04e-19,52;UBERON:0004121,3.50e-17,95;UBERON:0000924,3.50e-17,95;UBERON:0006601,3.50e-17,95;UBERON:0000955,1.31e-16,47;UBERON:0006238,1.31e-16,47;UBERON:0002616,4.91e-16,46;UBERON:0002020,1.91e-15,34;UBERON:0002346,1.09e-14,64;UBERON:0003075,1.09e-14,64;UBERON:0007284,1.09e-14,64;UBERON:0010371,6.29e-14,73;UBERON:0003080,1.02e-13,40;UBERON:0002780,3.05e-13,39;UBERON:0001890,3.05e-13,39;UBERON:0006240,3.05e-13,39;UBERON:0003528,6.57e-13,29;UBERON:0002791,6.57e-13,29;UBERON:0001893,6.57e-13,29;UBERON:0003056,3.07e-11,49;UBERON:0002619,8.34e-10,17;UBERON:0000956,4.69e-09,21;UBERON:0001869,4.69e-09,21;UBERON:0000203,4.69e-09,21;UBERON:0002021,5.41e-08,10;UBERON:0000411,5.41e-08,10;UBERON:0001950,5.41e-08,10;UBERON:0002384,2.57e-07,46;UBERON:0002390,6.20e-07,45;UBERON:0003061,6.20e-07,45|phase1_expression=11.0502704502308,6.63053274514786,2.27499619694768,10.5862473957391,13.5241847085514,7.55456723603504,7.47560449905682,47.5173830265001,74.33644529608,69.2830997913101,93.1425747146747,75.7835510455696,41.9441788331454,61.7188041078122,10.9926221399169,8.90891176515234,4.19737126876888,23.6596624018678,19.0589062711977,23.7658205006897,13.9470995847754,14.9929336313337,7.31359409589019,5.75972722056264,7.57050627521661,6.89078356938024,6.03066794622705,7.97243560937789,7.22088993934221,6.80481350351813,8.86922042621219,15.8757668364908,17.8368788399525,15.8481681015439,4.33277429626912,7.97926297720763,8.98345167554424,3.76678467663217,3.906676722619,0.523523743973798,2.35292595212406,4.09827290975067,1.94204141212461,10.3235390739973,8.51566222243922,8.07605709511399,28.9484797408774,14.3896603211095,14.0599156950062,19.2485600083541,13.5786828976602,7.18762821824858,21.8117387875057,39.8949178106239,32.9371923159615,11.8339340576536,8.30946975822394,7.73508138416164,22.4571271554154,25.9205579843296,25.3532561402472,29.4794742900145,20.4537803105562,47.6946850159141,40.543520865246,46.1812074714965,31.4580116044325,28.8163728991166,6.63613518774257,10.2604513132085,7.78202357000113,45.4185065202048,49.695421714113,16.7812394924487,14.4726661237537,18.3843757322004,74.8787990795843,79.8045863032423,65.2827766339035,20.7061471736404,25.6165402086747,18.7528813400434,58.0700637922872,56.8390236131997,59.1329218896255,35.3554302568401,35.0234334765793,29.4511124403975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.48581147025307,7.09074478359384,8.99055160723564,9.9266138603782,7.18790290423307|short_description=p1@Gnl1}} | ||
|EntrezGene=14670 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=E9PYS8,P36916,Q52KE3 | |||
|association_with_transcript=0bp_to_ENSMUST00000166679,NM_008136,uc008cjo.1_5end | |||
|description=CAGE_peak_1_at_Gnl1_5end | |||
|id=chr17:36116876..36116954,+ | |||
|ontology_enrichment_celltype=CL:0000548!8.09e-13!115;CL:0000004!8.09e-13!115;CL:0000255!8.09e-13!115;CL:0000144!1.57e-11!121;CL:0000012!1.57e-11!121;CL:0002371!3.81e-11!118;CL:0000034!5.29e-11!97;CL:0000723!1.92e-10!91;CL:0000048!1.92e-10!91;CL:0000117!4.89e-09!23;CL:0000337!4.89e-09!23;CL:0000219!9.53e-09!54;CL:0002319!1.82e-08!43;CL:0000221!2.37e-08!44;CL:0000133!2.37e-08!44;CL:0000988!2.67e-08!32;CL:0002032!2.67e-08!32;CL:0000037!2.67e-08!32;CL:0000566!2.67e-08!32;CL:0000837!2.67e-08!32;CL:0002031!3.74e-08!25;CL:0000055!1.26e-07!50;CL:0002320!2.57e-07!46;CL:0000134!2.57e-07!46;CL:0000738!2.68e-07!17;CL:0002087!2.68e-07!17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000034,5.25e-11,97;CL:0000723,1.90e-10,91;CL:0000048,1.90e-10,91;CL:0000117,4.89e-09,23;CL:0000337,4.89e-09,23;CL:0000219,9.53e-09,54;CL:0002319,1.82e-08,43;CL:0000221,2.37e-08,44;CL:0000133,2.37e-08,44;CL:0000988,2.67e-08,32;CL:0002032,2.67e-08,32;CL:0000037,2.67e-08,32;CL:0000837,2.67e-08,32;CL:0002031,3.74e-08,25;CL:0002320,2.57e-07,46;CL:0000134,2.57e-07,46;CL:0000738,2.68e-07,17;CL:0002087,2.68e-07,17 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007811!3.35e-21!86;UBERON:0000073!4.96e-21!75;UBERON:0001016!4.96e-21!75;UBERON:0001017!1.48e-20!73;UBERON:0005743!1.48e-20!73;UBERON:0001049!4.04e-19!52;UBERON:0005068!4.04e-19!52;UBERON:0006241!4.04e-19!52;UBERON:0007135!4.04e-19!52;UBERON:0000955!1.50e-18!50;UBERON:0006238!1.50e-18!50;UBERON:0002616!5.86e-18!49;UBERON:0000153!1.51e-17!94;UBERON:0004121!6.97e-16!102;UBERON:0000924!6.97e-16!102;UBERON:0006601!6.97e-16!102;UBERON:0002020!1.91e-15!34;UBERON:0000033!1.41e-14!63;UBERON:0003080!1.02e-13!40;UBERON:0002780!3.05e-13!39;UBERON:0001890!3.05e-13!39;UBERON:0006240!3.05e-13!39;UBERON:0002346!4.58e-13!71;UBERON:0003075!4.58e-13!71;UBERON:0007284!4.58e-13!71;UBERON:0002791!6.57e-13!29;UBERON:0003528!6.57e-13!29;UBERON:0001893!6.57e-13!29;UBERON:0000064!1.38e-12!99;UBERON:0003056!3.07e-11!49;UBERON:0002619!8.34e-10!17;UBERON:0000956!4.69e-09!21;UBERON:0001869!4.69e-09!21;UBERON:0000203!4.69e-09!21;UBERON:0002021!5.41e-08!10;UBERON:0000411!5.41e-08!10;UBERON:0001950!5.41e-08!10;UBERON:0002384!2.57e-07!46;UBERON:0002390!6.20e-07!45;UBERON:0003061!6.20e-07!45 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,4.96e-21,75;UBERON:0000073,1.19e-20,54;UBERON:0001017,1.48e-20,73;UBERON:0001049,4.04e-19,52;UBERON:0005068,4.04e-19,52;UBERON:0006241,4.04e-19,52;UBERON:0007135,4.04e-19,52;UBERON:0004121,3.50e-17,95;UBERON:0000924,3.50e-17,95;UBERON:0006601,3.50e-17,95;UBERON:0000955,1.31e-16,47;UBERON:0006238,1.31e-16,47;UBERON:0002616,4.91e-16,46;UBERON:0002020,1.91e-15,34;UBERON:0002346,1.09e-14,64;UBERON:0003075,1.09e-14,64;UBERON:0007284,1.09e-14,64;UBERON:0010371,6.29e-14,73;UBERON:0003080,1.02e-13,40;UBERON:0002780,3.05e-13,39;UBERON:0001890,3.05e-13,39;UBERON:0006240,3.05e-13,39;UBERON:0003528,6.57e-13,29;UBERON:0002791,6.57e-13,29;UBERON:0001893,6.57e-13,29;UBERON:0003056,3.07e-11,49;UBERON:0002619,8.34e-10,17;UBERON:0000956,4.69e-09,21;UBERON:0001869,4.69e-09,21;UBERON:0000203,4.69e-09,21;UBERON:0002021,5.41e-08,10;UBERON:0000411,5.41e-08,10;UBERON:0001950,5.41e-08,10;UBERON:0002384,2.57e-07,46;UBERON:0002390,6.20e-07,45;UBERON:0003061,6.20e-07,45 | |||
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| |||
|short_description=p1@Gnl1 | |||
}} |
Revision as of 14:28, 13 September 2013
Short description: | p1@Gnl1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Gnl1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000166679, NM_008136, uc008cjo.1_5end |
EntrezGene: | Gnl1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
stem cell | 5.25e-11 | 97 |
somatic stem cell | 1.90e-10 | 91 |
multi fate stem cell | 1.90e-10 | 91 |
CNS neuron (sensu Vertebrata) | 4.89e-09 | 23 |
neuroblast (sensu Vertebrata) | 4.89e-09 | 23 |
motile cell | 9.53e-09 | 54 |
neural cell | 1.82e-08 | 43 |
ectodermal cell | 2.37e-08 | 44 |
neurectodermal cell | 2.37e-08 | 44 |
hematopoietic cell | 2.67e-08 | 32 |
hematopoietic oligopotent progenitor cell | 2.67e-08 | 32 |
hematopoietic stem cell | 2.67e-08 | 32 |
hematopoietic multipotent progenitor cell | 2.67e-08 | 32 |
hematopoietic lineage restricted progenitor cell | 3.74e-08 | 25 |
connective tissue cell | 2.57e-07 | 46 |
mesenchymal cell | 2.57e-07 | 46 |
leukocyte | 2.68e-07 | 17 |
nongranular leukocyte | 2.68e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
nervous system | 4.96e-21 | 75 |
regional part of nervous system | 1.19e-20 | 54 |
central nervous system | 1.48e-20 | 73 |
neural tube | 4.04e-19 | 52 |
neural rod | 4.04e-19 | 52 |
future spinal cord | 4.04e-19 | 52 |
neural keel | 4.04e-19 | 52 |
ectoderm-derived structure | 3.50e-17 | 95 |
ectoderm | 3.50e-17 | 95 |
presumptive ectoderm | 3.50e-17 | 95 |
brain | 1.31e-16 | 47 |
future brain | 1.31e-16 | 47 |
regional part of brain | 4.91e-16 | 46 |
gray matter | 1.91e-15 | 34 |
neurectoderm | 1.09e-14 | 64 |
neural plate | 1.09e-14 | 64 |
presumptive neural plate | 1.09e-14 | 64 |
ecto-epithelium | 6.29e-14 | 73 |
anterior neural tube | 1.02e-13 | 40 |
regional part of forebrain | 3.05e-13 | 39 |
forebrain | 3.05e-13 | 39 |
future forebrain | 3.05e-13 | 39 |
brain grey matter | 6.57e-13 | 29 |
regional part of telencephalon | 6.57e-13 | 29 |
telencephalon | 6.57e-13 | 29 |
pre-chordal neural plate | 3.07e-11 | 49 |
regional part of cerebral cortex | 8.34e-10 | 17 |
cerebral cortex | 4.69e-09 | 21 |
cerebral hemisphere | 4.69e-09 | 21 |
pallium | 4.69e-09 | 21 |
occipital lobe | 5.41e-08 | 10 |
visual cortex | 5.41e-08 | 10 |
neocortex | 5.41e-08 | 10 |
connective tissue | 2.57e-07 | 46 |
hematopoietic system | 6.20e-07 | 45 |
blood island | 6.20e-07 | 45 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.