FFCP PHASE1:Hg19::chr6:138893690..138893714,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=57224|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=21021|TSSclassifier=S|UniProt=Q5SYE7|association_with_transcript=-13bp_to_ENST00000427025_5end|coexpression_cluster_id=C3731|description=CAGE_peak_9_at_NHSL1_5end|id=chr6:138893690..138893714,-|ontology_enrichment_celltype=CL:0000147!2.62e-14!14;CL:0000133!8.46e-12!59;CL:0000148!1.22e-10!10;CL:0000541!1.22e-10!10;CL:0000047!5.34e-09!8;CL:0002319!2.86e-08!25;CL:0000221!4.35e-08!71;CL:0000333!1.68e-07!41;CL:0000325!2.99e-07!39;CL:0000075!3.44e-07!27;CL:0000710!3.67e-07!20;CL:0000540!7.76e-07!6;CL:0000031!7.76e-07!6;CL:0000404!7.76e-07!6|ontology_enrichment_celltype_v019=CL:0000147;3.01e-20;14!CL:0002319;1.11e-15;25!CL:0000148;9.86e-15;10!CL:0000149;3.30e-12;4!CL:0000075;2.58e-11;27!CL:0000710;6.80e-11;20!CL:0002567;2.23e-10;3!CL:0002586;2.02e-09;3!CL:0000540;1.72e-08;6!CL:0000404;1.72e-08;6!CL:0000182;2.23e-08;12!CL:0002077;6.39e-08;34!CL:0000047;2.49e-07;2!CL:0000123;7.55e-07;2!CL:0000242;7.55e-07;2!CL:0000128;8.80e-07;7!CL:0000126;8.80e-07;7!CL:0000127;8.80e-07;7|ontology_enrichment_celltype_v019_2=CL:0000147,2.19e-20,14;CL:0000133,6.82e-20,59;CL:0002319,1.58e-15,25;CL:0000221,2.59e-15,72;CL:0000148,9.95e-15,10;CL:0000541,9.95e-15,10;CL:0000047,1.69e-13,8;CL:0000149,2.09e-12,4;CL:0000333,6.09e-12,41;CL:0000075,2.19e-11,27;CL:0000710,6.12e-11,20;CL:0002567,2.25e-10,3;CL:0002586,1.28e-09,3;CL:0002077,1.41e-08,34;CL:0000182,2.20e-08,12;CL:0000540,2.22e-08,6;CL:0000031,2.22e-08,6;CL:0000404,2.22e-08,6;CL:0000242,7.04e-07,2|ontology_enrichment_development_v019=CL:0000133;1.03e-09;59!CL:0000031;1.72e-08;6|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=DOID:3307,7.04e-07,2|ontology_enrichment_uberon=UBERON:0002346!8.52e-17!90;UBERON:0003075!1.01e-16!86;UBERON:0007284!1.01e-16!86;UBERON:0005743!7.79e-16!86;UBERON:0000073!1.30e-14!94;UBERON:0001016!1.30e-14!94;UBERON:0001017!3.77e-13!82;UBERON:0000924!4.89e-13!173;UBERON:0006601!4.89e-13!173;UBERON:0004121!8.60e-13!169;UBERON:0000483!7.27e-11!309;UBERON:0000119!7.91e-11!312;UBERON:0000033!8.24e-10!123;UBERON:0003056!9.75e-10!61;UBERON:0000153!1.05e-09!129;UBERON:0007811!1.05e-09!129;UBERON:0007625!2.40e-09!11;UBERON:0001049!4.24e-09!57;UBERON:0005068!4.24e-09!57;UBERON:0006241!4.24e-09!57;UBERON:0007135!4.24e-09!57;UBERON:0002616!1.86e-08!59;UBERON:0007023!2.29e-08!115;UBERON:0000955!8.09e-08!69;UBERON:0006238!8.09e-08!69;UBERON:0000019!1.45e-07!19;UBERON:0000047!1.45e-07!19;UBERON:0004088!1.45e-07!19;UBERON:0003072!1.45e-07!19;UBERON:0003071!1.45e-07!19;UBERON:0004128!1.45e-07!19;UBERON:0001456!1.61e-07!21;UBERON:0000481!1.66e-07!347;UBERON:0003076!4.08e-07!15;UBERON:0003057!4.08e-07!15;UBERON:0000970!5.53e-07!20;UBERON:0000468!8.61e-07!659|ontology_enrichment_uberon_v019=UBERON:0000966;1.67e-14;5!UBERON:0005388;1.67e-14;5!UBERON:0001802;1.67e-14;5!UBERON:0007625;5.95e-12;11!UBERON:0000019;1.17e-10;19!UBERON:0000047;1.17e-10;19!UBERON:0004088;1.17e-10;19!UBERON:0010230;1.17e-10;19!UBERON:0000970;4.86e-10;20!UBERON:0002104;1.76e-09;21!UBERON:0001456;1.76e-09;21!UBERON:0001781;2.02e-09;3!UBERON:0001782;2.02e-09;3!UBERON:0000020;1.65e-08;23!UBERON:0001032;4.38e-08;24!UBERON:0004456;4.38e-08;24!UBERON:0010371;5.19e-07;31|ontology_enrichment_uberon_v019_2=UBERON:0007625,3.43e-12,11;UBERON:0000966,4.51e-12,6;UBERON:0005388,4.51e-12,6;UBERON:0001802,4.51e-12,6;UBERON:0000019,3.84e-10,20;UBERON:0000047,3.84e-10,20;UBERON:0010312,3.84e-10,20;UBERON:0004088,3.84e-10,20;UBERON:0010230,3.84e-10,20;UBERON:0003072,3.84e-10,20;UBERON:0004128,3.84e-10,20;UBERON:0003071,3.84e-10,20;UBERON:0003075,5.62e-10,82;UBERON:0007284,5.62e-10,82;UBERON:0001782,1.28e-09,3;UBERON:0005424,1.28e-09,3;UBERON:0000970,1.41e-09,21;UBERON:0002104,1.41e-09,21;UBERON:0002346,2.75e-09,86;UBERON:0001456,4.60e-09,22;UBERON:0010371,1.15e-08,104;UBERON:0003056,2.54e-08,61;UBERON:0004121,3.43e-08,171;UBERON:0000924,3.43e-08,171;UBERON:0006601,3.43e-08,171;UBERON:0000020,3.62e-08,24;UBERON:0001032,3.62e-08,24;UBERON:0004456,3.62e-08,24;UBERON:0011216,3.80e-08,223;UBERON:0001048,1.73e-07,160;UBERON:0001781,2.65e-07,4;UBERON:0000483,3.57e-07,306;UBERON:0001017,3.64e-07,81;UBERON:0000119,5.20e-07,309;UBERON:0001016,6.72e-07,89|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0.261185628199839,0,0,0,0,0.123766352960047,0,0.672325146451775,0,0,0,0.738726348460727,1.02000345622126,1.56727360739044,3.14859585844162,0.136874425072884,3.38965126905968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.55244006342983,0.886917589850256,1.49319135678314,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0.419499436209906,0,0.417989933073621,0,0,0.66944122552934,0,0,0,0,0,0.357198913136319,0,0,0,0,0.549605231791222,0,0,0,0,0.12663051166458,0,0.286836620748814,0,0.560677600142307,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=57224 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21021 | |||
|TSSclassifier=S | |||
|UniProt=Q5SYE7 | |||
|association_with_transcript=-13bp_to_ENST00000427025_5end | |||
|coexpression_cluster_id=C3731 | |||
|description=CAGE_peak_9_at_NHSL1_5end | |||
|id=chr6:138893690..138893714,- | |||
|ontology_enrichment_celltype=CL:0000147!2.62e-14!14;CL:0000133!8.46e-12!59;CL:0000148!1.22e-10!10;CL:0000541!1.22e-10!10;CL:0000047!5.34e-09!8;CL:0002319!2.86e-08!25;CL:0000221!4.35e-08!71;CL:0000333!1.68e-07!41;CL:0000325!2.99e-07!39;CL:0000075!3.44e-07!27;CL:0000710!3.67e-07!20;CL:0000540!7.76e-07!6;CL:0000031!7.76e-07!6;CL:0000404!7.76e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0000147;3.01e-20;14!CL:0002319;1.11e-15;25!CL:0000148;9.86e-15;10!CL:0000149;3.30e-12;4!CL:0000075;2.58e-11;27!CL:0000710;6.80e-11;20!CL:0002567;2.23e-10;3!CL:0002586;2.02e-09;3!CL:0000540;1.72e-08;6!CL:0000404;1.72e-08;6!CL:0000182;2.23e-08;12!CL:0002077;6.39e-08;34!CL:0000047;2.49e-07;2!CL:0000123;7.55e-07;2!CL:0000242;7.55e-07;2!CL:0000128;8.80e-07;7!CL:0000126;8.80e-07;7!CL:0000127;8.80e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000147,2.19e-20,14;CL:0000133,6.82e-20,59;CL:0002319,1.58e-15,25;CL:0000221,2.59e-15,72;CL:0000148,9.95e-15,10;CL:0000541,9.95e-15,10;CL:0000047,1.69e-13,8;CL:0000149,2.09e-12,4;CL:0000333,6.09e-12,41;CL:0000075,2.19e-11,27;CL:0000710,6.12e-11,20;CL:0002567,2.25e-10,3;CL:0002586,1.28e-09,3;CL:0002077,1.41e-08,34;CL:0000182,2.20e-08,12;CL:0000540,2.22e-08,6;CL:0000031,2.22e-08,6;CL:0000404,2.22e-08,6;CL:0000242,7.04e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000133;1.03e-09;59!CL:0000031;1.72e-08;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:3307,7.04e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0002346!8.52e-17!90;UBERON:0003075!1.01e-16!86;UBERON:0007284!1.01e-16!86;UBERON:0005743!7.79e-16!86;UBERON:0000073!1.30e-14!94;UBERON:0001016!1.30e-14!94;UBERON:0001017!3.77e-13!82;UBERON:0000924!4.89e-13!173;UBERON:0006601!4.89e-13!173;UBERON:0004121!8.60e-13!169;UBERON:0000483!7.27e-11!309;UBERON:0000119!7.91e-11!312;UBERON:0000033!8.24e-10!123;UBERON:0003056!9.75e-10!61;UBERON:0000153!1.05e-09!129;UBERON:0007811!1.05e-09!129;UBERON:0007625!2.40e-09!11;UBERON:0001049!4.24e-09!57;UBERON:0005068!4.24e-09!57;UBERON:0006241!4.24e-09!57;UBERON:0007135!4.24e-09!57;UBERON:0002616!1.86e-08!59;UBERON:0007023!2.29e-08!115;UBERON:0000955!8.09e-08!69;UBERON:0006238!8.09e-08!69;UBERON:0000019!1.45e-07!19;UBERON:0000047!1.45e-07!19;UBERON:0004088!1.45e-07!19;UBERON:0003072!1.45e-07!19;UBERON:0003071!1.45e-07!19;UBERON:0004128!1.45e-07!19;UBERON:0001456!1.61e-07!21;UBERON:0000481!1.66e-07!347;UBERON:0003076!4.08e-07!15;UBERON:0003057!4.08e-07!15;UBERON:0000970!5.53e-07!20;UBERON:0000468!8.61e-07!659 | |||
|ontology_enrichment_uberon_v019=UBERON:0000966;1.67e-14;5!UBERON:0005388;1.67e-14;5!UBERON:0001802;1.67e-14;5!UBERON:0007625;5.95e-12;11!UBERON:0000019;1.17e-10;19!UBERON:0000047;1.17e-10;19!UBERON:0004088;1.17e-10;19!UBERON:0010230;1.17e-10;19!UBERON:0000970;4.86e-10;20!UBERON:0002104;1.76e-09;21!UBERON:0001456;1.76e-09;21!UBERON:0001781;2.02e-09;3!UBERON:0001782;2.02e-09;3!UBERON:0000020;1.65e-08;23!UBERON:0001032;4.38e-08;24!UBERON:0004456;4.38e-08;24!UBERON:0010371;5.19e-07;31 | |||
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| |||
|short_description=p9@NHSL1 | |||
}} |
Revision as of 18:21, 13 September 2013
Short description: | p9@NHSL1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_9_at_NHSL1_5end |
Coexpression cluster: | C3731_temporal_Neural_parietal_Melanocyte_duodenum_occipital_Neurons |
Association with transcript: | -13bp_to_ENST00000427025_5end |
EntrezGene: | NHSL1 |
HGNC: | 21021 |
UniProt: | Q5SYE7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pigment cell | 2.19e-20 | 14 |
neurectodermal cell | 6.82e-20 | 59 |
neural cell | 1.58e-15 | 25 |
ectodermal cell | 2.59e-15 | 72 |
melanocyte | 9.95e-15 | 10 |
melanoblast | 9.95e-15 | 10 |
neuronal stem cell | 1.69e-13 | 8 |
visual pigment cell | 2.09e-12 | 4 |
migratory neural crest cell | 6.09e-12 | 41 |
columnar/cuboidal epithelial cell | 2.19e-11 | 27 |
neurecto-epithelial cell | 6.12e-11 | 20 |
light melanocyte | 2.25e-10 | 3 |
retinal pigment epithelial cell | 1.28e-09 | 3 |
ecto-epithelial cell | 1.41e-08 | 34 |
hepatocyte | 2.20e-08 | 12 |
neuron | 2.22e-08 | 6 |
neuroblast | 2.22e-08 | 6 |
electrically signaling cell | 2.22e-08 | 6 |
Merkel cell | 7.04e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
pigment epithelium of eye | 3.43e-12 | 11 |
retina | 4.51e-12 | 6 |
photoreceptor array | 4.51e-12 | 6 |
posterior segment of eyeball | 4.51e-12 | 6 |
camera-type eye | 3.84e-10 | 20 |
simple eye | 3.84e-10 | 20 |
immature eye | 3.84e-10 | 20 |
ocular region | 3.84e-10 | 20 |
eyeball of camera-type eye | 3.84e-10 | 20 |
optic cup | 3.84e-10 | 20 |
optic vesicle | 3.84e-10 | 20 |
eye primordium | 3.84e-10 | 20 |
neural plate | 5.62e-10 | 82 |
presumptive neural plate | 5.62e-10 | 82 |
pigmented layer of retina | 1.28e-09 | 3 |
presumptive retinal pigmented epithelium | 1.28e-09 | 3 |
eye | 1.41e-09 | 21 |
visual system | 1.41e-09 | 21 |
neurectoderm | 2.75e-09 | 86 |
face | 4.60e-09 | 22 |
ecto-epithelium | 1.15e-08 | 104 |
pre-chordal neural plate | 2.54e-08 | 61 |
ectoderm-derived structure | 3.43e-08 | 171 |
ectoderm | 3.43e-08 | 171 |
presumptive ectoderm | 3.43e-08 | 171 |
sense organ | 3.62e-08 | 24 |
sensory system | 3.62e-08 | 24 |
entire sense organ system | 3.62e-08 | 24 |
organ system subdivision | 3.80e-08 | 223 |
primordium | 1.73e-07 | 160 |
layer of retina | 2.65e-07 | 4 |
epithelium | 3.57e-07 | 306 |
central nervous system | 3.64e-07 | 81 |
cell layer | 5.20e-07 | 309 |
nervous system | 6.72e-07 | 89 |
Ontology term | p-value | n |
---|---|---|
teratoma | 7.04e-07 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.